co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G65295

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0033494: ferulate metabolic process	0.00E+00
2	GO:0016553: base conversion or substitution editing	0.00E+00
3	GO:0042493: response to drug	0.00E+00
4	GO:0015979: photosynthesis	1.16E-06
5	GO:0090391: granum assembly	3.72E-06
6	GO:0010027: thylakoid membrane organization	6.73E-06
7	GO:0009735: response to cytokinin	1.32E-05
8	GO:0010196: nonphotochemical quenching	7.52E-05
9	GO:0042254: ribosome biogenesis	7.66E-05
10	GO:0032544: plastid translation	1.22E-04
11	GO:0071277: cellular response to calcium ion	1.42E-04
12	GO:0043489: RNA stabilization	1.42E-04
13	GO:0042371: vitamin K biosynthetic process	1.42E-04
14	GO:1902458: positive regulation of stomatal opening	1.42E-04
15	GO:0071588: hydrogen peroxide mediated signaling pathway	1.42E-04
16	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	1.42E-04
17	GO:0010205: photoinhibition	1.80E-04
18	GO:0009773: photosynthetic electron transport in photosystem I	2.49E-04
19	GO:0045490: pectin catabolic process	2.82E-04
20	GO:0043255: regulation of carbohydrate biosynthetic process	3.25E-04
21	GO:0001736: establishment of planar polarity	3.25E-04
22	GO:1903426: regulation of reactive oxygen species biosynthetic process	3.25E-04
23	GO:0010024: phytochromobilin biosynthetic process	3.25E-04
24	GO:0010143: cutin biosynthetic process	3.70E-04
25	GO:0010207: photosystem II assembly	3.70E-04
26	GO:0006636: unsaturated fatty acid biosynthetic process	4.63E-04
27	GO:0006788: heme oxidation	5.33E-04
28	GO:0015714: phosphoenolpyruvate transport	5.33E-04
29	GO:0015840: urea transport	5.33E-04
30	GO:0006518: peptide metabolic process	5.33E-04
31	GO:0006696: ergosterol biosynthetic process	5.33E-04
32	GO:0016998: cell wall macromolecule catabolic process	6.19E-04
33	GO:0080170: hydrogen peroxide transmembrane transport	7.63E-04
34	GO:0009650: UV protection	7.63E-04
35	GO:0046739: transport of virus in multicellular host	7.63E-04
36	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	7.63E-04
37	GO:0071484: cellular response to light intensity	7.63E-04
38	GO:0045727: positive regulation of translation	1.01E-03
39	GO:2000122: negative regulation of stomatal complex development	1.01E-03
40	GO:0030104: water homeostasis	1.01E-03
41	GO:0015713: phosphoglycerate transport	1.01E-03
42	GO:0010037: response to carbon dioxide	1.01E-03
43	GO:0015976: carbon utilization	1.01E-03
44	GO:0006183: GTP biosynthetic process	1.01E-03
45	GO:0009409: response to cold	1.11E-03
46	GO:0006869: lipid transport	1.16E-03
47	GO:0045038: protein import into chloroplast thylakoid membrane	1.28E-03
48	GO:0006461: protein complex assembly	1.28E-03
49	GO:0009913: epidermal cell differentiation	1.57E-03
50	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.57E-03
51	GO:0010337: regulation of salicylic acid metabolic process	1.57E-03
52	GO:0006633: fatty acid biosynthetic process	1.69E-03
53	GO:0006412: translation	1.84E-03
54	GO:0006694: steroid biosynthetic process	1.88E-03
55	GO:0010019: chloroplast-nucleus signaling pathway	1.88E-03
56	GO:0015995: chlorophyll biosynthetic process	2.05E-03
57	GO:0010411: xyloglucan metabolic process	2.05E-03
58	GO:1900057: positive regulation of leaf senescence	2.21E-03
59	GO:0010444: guard mother cell differentiation	2.21E-03
60	GO:0009395: phospholipid catabolic process	2.21E-03
61	GO:0009772: photosynthetic electron transport in photosystem II	2.21E-03
62	GO:0008610: lipid biosynthetic process	2.56E-03
63	GO:0030091: protein repair	2.56E-03
64	GO:0046620: regulation of organ growth	2.56E-03
65	GO:0009704: de-etiolation	2.56E-03
66	GO:2000070: regulation of response to water deprivation	2.56E-03
67	GO:0031540: regulation of anthocyanin biosynthetic process	2.56E-03
68	GO:0009631: cold acclimation	2.61E-03
69	GO:0007186: G-protein coupled receptor signaling pathway	2.93E-03
70	GO:0010497: plasmodesmata-mediated intercellular transport	2.93E-03
71	GO:0009657: plastid organization	2.93E-03
72	GO:0009808: lignin metabolic process	2.93E-03
73	GO:0015996: chlorophyll catabolic process	2.93E-03
74	GO:0010206: photosystem II repair	3.31E-03
75	GO:0090333: regulation of stomatal closure	3.31E-03
76	GO:0009416: response to light stimulus	3.31E-03
77	GO:0009926: auxin polar transport	3.68E-03
78	GO:0042546: cell wall biogenesis	3.83E-03
79	GO:0006032: chitin catabolic process	4.12E-03
80	GO:0048829: root cap development	4.12E-03
81	GO:0006949: syncytium formation	4.12E-03
82	GO:0018119: peptidyl-cysteine S-nitrosylation	4.55E-03
83	GO:0048765: root hair cell differentiation	4.55E-03
84	GO:0000038: very long-chain fatty acid metabolic process	4.55E-03
85	GO:0016024: CDP-diacylglycerol biosynthetic process	4.99E-03
86	GO:0045037: protein import into chloroplast stroma	4.99E-03
87	GO:0006006: glucose metabolic process	5.45E-03
88	GO:0010229: inflorescence development	5.45E-03
89	GO:0009718: anthocyanin-containing compound biosynthetic process	5.45E-03
90	GO:0009725: response to hormone	5.45E-03
91	GO:0006096: glycolytic process	5.85E-03
92	GO:0019253: reductive pentose-phosphate cycle	5.92E-03
93	GO:0048467: gynoecium development	5.92E-03
94	GO:0009825: multidimensional cell growth	6.41E-03
95	GO:0010167: response to nitrate	6.41E-03
96	GO:0071732: cellular response to nitric oxide	6.41E-03
97	GO:0010053: root epidermal cell differentiation	6.41E-03
98	GO:0016042: lipid catabolic process	6.86E-03
99	GO:0010025: wax biosynthetic process	6.91E-03
100	GO:0042023: DNA endoreduplication	6.91E-03
101	GO:0006833: water transport	6.91E-03
102	GO:0000027: ribosomal large subunit assembly	7.42E-03
103	GO:0006487: protein N-linked glycosylation	7.42E-03
104	GO:0007017: microtubule-based process	7.95E-03
105	GO:0031408: oxylipin biosynthetic process	8.49E-03
106	GO:0003333: amino acid transmembrane transport	8.49E-03
107	GO:0009411: response to UV	9.62E-03
108	GO:0071369: cellular response to ethylene stimulus	9.62E-03
109	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	9.62E-03
110	GO:0071555: cell wall organization	9.66E-03
111	GO:0042127: regulation of cell proliferation	1.02E-02
112	GO:0009734: auxin-activated signaling pathway	1.10E-02
113	GO:0042335: cuticle development	1.14E-02
114	GO:0034220: ion transmembrane transport	1.14E-02
115	GO:0000413: protein peptidyl-prolyl isomerization	1.14E-02
116	GO:0009733: response to auxin	1.15E-02
117	GO:0009958: positive gravitropism	1.20E-02
118	GO:0010182: sugar mediated signaling pathway	1.20E-02
119	GO:0009741: response to brassinosteroid	1.20E-02
120	GO:0009451: RNA modification	1.25E-02
121	GO:0015986: ATP synthesis coupled proton transport	1.26E-02
122	GO:0002229: defense response to oomycetes	1.39E-02
123	GO:0000302: response to reactive oxygen species	1.39E-02
124	GO:0016132: brassinosteroid biosynthetic process	1.39E-02
125	GO:0009630: gravitropism	1.46E-02
126	GO:0071281: cellular response to iron ion	1.53E-02
127	GO:1901657: glycosyl compound metabolic process	1.53E-02
128	GO:0010252: auxin homeostasis	1.60E-02
129	GO:0009828: plant-type cell wall loosening	1.60E-02
130	GO:0045893: positive regulation of transcription, DNA-templated	1.76E-02
131	GO:0005975: carbohydrate metabolic process	1.81E-02
132	GO:0009826: unidimensional cell growth	1.82E-02
133	GO:0009658: chloroplast organization	1.89E-02
134	GO:0042128: nitrate assimilation	1.96E-02
135	GO:0016311: dephosphorylation	2.11E-02
136	GO:0009817: defense response to fungus, incompatible interaction	2.19E-02
137	GO:0030244: cellulose biosynthetic process	2.19E-02
138	GO:0010311: lateral root formation	2.26E-02
139	GO:0009407: toxin catabolic process	2.34E-02
140	GO:0009834: plant-type secondary cell wall biogenesis	2.34E-02
141	GO:0080167: response to karrikin	2.35E-02
142	GO:0010119: regulation of stomatal movement	2.42E-02
143	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.43E-02
144	GO:0006865: amino acid transport	2.51E-02
145	GO:0045087: innate immune response	2.59E-02
146	GO:0034599: cellular response to oxidative stress	2.67E-02
147	GO:0008283: cell proliferation	3.10E-02
148	GO:0009744: response to sucrose	3.10E-02
149	GO:0009636: response to toxic substance	3.37E-02
150	GO:0042742: defense response to bacterium	3.57E-02
151	GO:0009664: plant-type cell wall organization	3.65E-02
152	GO:0009753: response to jasmonic acid	3.71E-02
153	GO:0009809: lignin biosynthetic process	3.83E-02
154	GO:0006364: rRNA processing	3.83E-02
155	GO:0006857: oligopeptide transport	4.02E-02
156	GO:0048316: seed development	4.42E-02
157	GO:0042545: cell wall modification	4.82E-02
158	GO:0009624: response to nematode	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
2	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
3	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
4	GO:0050614: delta24-sterol reductase activity	0.00E+00
5	GO:0019843: rRNA binding	1.27E-05
6	GO:0030570: pectate lyase activity	3.89E-05
7	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	1.42E-04
8	GO:0045485: omega-6 fatty acid desaturase activity	1.42E-04
9	GO:0015200: methylammonium transmembrane transporter activity	1.42E-04
10	GO:0019210: kinase inhibitor activity	1.42E-04
11	GO:0052689: carboxylic ester hydrolase activity	1.43E-04
12	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	3.25E-04
13	GO:0003938: IMP dehydrogenase activity	3.25E-04
14	GO:0008266: poly(U) RNA binding	3.70E-04
15	GO:0050734: hydroxycinnamoyltransferase activity	5.33E-04
16	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	5.33E-04
17	GO:0016788: hydrolase activity, acting on ester bonds	5.75E-04
18	GO:0003735: structural constituent of ribosome	6.70E-04
19	GO:0016851: magnesium chelatase activity	7.63E-04
20	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	7.63E-04
21	GO:0010328: auxin influx transmembrane transporter activity	1.01E-03
22	GO:0052793: pectin acetylesterase activity	1.01E-03
23	GO:0004392: heme oxygenase (decyclizing) activity	1.01E-03
24	GO:0015204: urea transmembrane transporter activity	1.01E-03
25	GO:0015120: phosphoglycerate transmembrane transporter activity	1.01E-03
26	GO:0010011: auxin binding	1.01E-03
27	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.01E-03
28	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.22E-03
29	GO:0016829: lyase activity	1.40E-03
30	GO:0004130: cytochrome-c peroxidase activity	1.57E-03
31	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.57E-03
32	GO:0016688: L-ascorbate peroxidase activity	1.57E-03
33	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.57E-03
34	GO:0008519: ammonium transmembrane transporter activity	1.57E-03
35	GO:0015250: water channel activity	1.74E-03
36	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.88E-03
37	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.05E-03
38	GO:0030674: protein binding, bridging	2.56E-03
39	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.93E-03
40	GO:0003993: acid phosphatase activity	2.99E-03
41	GO:0004568: chitinase activity	4.12E-03
42	GO:0015293: symporter activity	4.13E-03
43	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.29E-03
44	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	5.05E-03
45	GO:0004565: beta-galactosidase activity	5.45E-03
46	GO:0004089: carbonate dehydratase activity	5.45E-03
47	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	6.91E-03
48	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	6.91E-03
49	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	6.91E-03
50	GO:0016746: transferase activity, transferring acyl groups	7.24E-03
51	GO:0005528: FK506 binding	7.42E-03
52	GO:0008289: lipid binding	1.08E-02
53	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.20E-02
54	GO:0050662: coenzyme binding	1.26E-02
55	GO:0004872: receptor activity	1.33E-02
56	GO:0016791: phosphatase activity	1.60E-02
57	GO:0005200: structural constituent of cytoskeleton	1.67E-02
58	GO:0008375: acetylglucosaminyltransferase activity	1.96E-02
59	GO:0102483: scopolin beta-glucosidase activity	2.03E-02
60	GO:0030247: polysaccharide binding	2.03E-02
61	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.34E-02
62	GO:0004222: metalloendopeptidase activity	2.34E-02
63	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.42E-02
64	GO:0030145: manganese ion binding	2.42E-02
65	GO:0008422: beta-glucosidase activity	2.76E-02
66	GO:0050661: NADP binding	2.84E-02
67	GO:0004364: glutathione transferase activity	3.01E-02
68	GO:0051287: NAD binding	3.55E-02
69	GO:0003690: double-stranded DNA binding	3.93E-02
70	GO:0005215: transporter activity	4.04E-02
71	GO:0015171: amino acid transmembrane transporter activity	4.12E-02
72	GO:0045330: aspartyl esterase activity	4.12E-02
73	GO:0045735: nutrient reservoir activity	4.32E-02
74	GO:0030599: pectinesterase activity	4.72E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009515: granal stacked thylakoid	0.00E+00
3	GO:0010240: plastid pyruvate dehydrogenase complex	0.00E+00
4	GO:0009579: thylakoid	2.78E-16
5	GO:0009535: chloroplast thylakoid membrane	3.22E-14
6	GO:0009534: chloroplast thylakoid	1.70E-13
7	GO:0009507: chloroplast	1.19E-11
8	GO:0009941: chloroplast envelope	1.36E-11
9	GO:0009570: chloroplast stroma	1.36E-08
10	GO:0048046: apoplast	1.81E-07
11	GO:0009543: chloroplast thylakoid lumen	6.16E-07
12	GO:0005618: cell wall	2.16E-06
13	GO:0005840: ribosome	2.80E-06
14	GO:0030095: chloroplast photosystem II	1.21E-05
15	GO:0042807: central vacuole	7.52E-05
16	GO:0010319: stromule	1.29E-04
17	GO:0043674: columella	1.42E-04
18	GO:0008180: COP9 signalosome	1.50E-04
19	GO:0005576: extracellular region	2.58E-04
20	GO:0031977: thylakoid lumen	3.82E-04
21	GO:0010007: magnesium chelatase complex	5.33E-04
22	GO:0009528: plastid inner membrane	5.33E-04
23	GO:0009654: photosystem II oxygen evolving complex	5.65E-04
24	GO:0015630: microtubule cytoskeleton	7.63E-04
25	GO:0009527: plastid outer membrane	1.01E-03
26	GO:0019898: extrinsic component of membrane	1.14E-03
27	GO:0016020: membrane	1.29E-03
28	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.57E-03
29	GO:0009986: cell surface	2.21E-03
30	GO:0009533: chloroplast stromal thylakoid	2.21E-03
31	GO:0019005: SCF ubiquitin ligase complex	2.27E-03
32	GO:0000326: protein storage vacuole	2.93E-03
33	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.31E-03
34	GO:0009505: plant-type cell wall	3.67E-03
35	GO:0000502: proteasome complex	4.95E-03
36	GO:0031012: extracellular matrix	5.45E-03
37	GO:0010287: plastoglobule	8.35E-03
38	GO:0009532: plastid stroma	8.49E-03
39	GO:0005886: plasma membrane	1.06E-02
40	GO:0009705: plant-type vacuole membrane	1.22E-02
41	GO:0009523: photosystem II	1.33E-02
42	GO:0009295: nucleoid	1.67E-02
43	GO:0030529: intracellular ribonucleoprotein complex	1.81E-02
44	GO:0009707: chloroplast outer membrane	2.19E-02
45	GO:0031969: chloroplast membrane	2.35E-02
46	GO:0031225: anchored component of membrane	2.58E-02
47	GO:0016021: integral component of membrane	4.09E-02
48	GO:0005773: vacuole	4.33E-02
49	GO:0005887: integral component of plasma membrane	4.68E-02
50	GO:0009706: chloroplast inner membrane	4.92E-02