GO Enrichment Analysis of Co-expressed Genes with
AT1G65230
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 2 | GO:0098586: cellular response to virus | 0.00E+00 |
| 3 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 4 | GO:0017009: protein-phycocyanobilin linkage | 0.00E+00 |
| 5 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 6 | GO:0010027: thylakoid membrane organization | 2.75E-06 |
| 7 | GO:0009773: photosynthetic electron transport in photosystem I | 2.94E-06 |
| 8 | GO:0015979: photosynthesis | 6.26E-05 |
| 9 | GO:1902025: nitrate import | 1.04E-04 |
| 10 | GO:0009443: pyridoxal 5'-phosphate salvage | 1.04E-04 |
| 11 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.04E-04 |
| 12 | GO:0000481: maturation of 5S rRNA | 1.04E-04 |
| 13 | GO:1904964: positive regulation of phytol biosynthetic process | 1.04E-04 |
| 14 | GO:0033481: galacturonate biosynthetic process | 1.04E-04 |
| 15 | GO:0065002: intracellular protein transmembrane transport | 1.04E-04 |
| 16 | GO:0006106: fumarate metabolic process | 1.04E-04 |
| 17 | GO:0043686: co-translational protein modification | 1.04E-04 |
| 18 | GO:0090548: response to nitrate starvation | 1.04E-04 |
| 19 | GO:0034337: RNA folding | 1.04E-04 |
| 20 | GO:0043953: protein transport by the Tat complex | 1.04E-04 |
| 21 | GO:0010205: photoinhibition | 1.15E-04 |
| 22 | GO:0008152: metabolic process | 1.33E-04 |
| 23 | GO:0016024: CDP-diacylglycerol biosynthetic process | 1.86E-04 |
| 24 | GO:0043255: regulation of carbohydrate biosynthetic process | 2.44E-04 |
| 25 | GO:0010115: regulation of abscisic acid biosynthetic process | 2.44E-04 |
| 26 | GO:0001736: establishment of planar polarity | 2.44E-04 |
| 27 | GO:0046741: transport of virus in host, tissue to tissue | 2.44E-04 |
| 28 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 2.44E-04 |
| 29 | GO:0009735: response to cytokinin | 2.85E-04 |
| 30 | GO:0006636: unsaturated fatty acid biosynthetic process | 3.06E-04 |
| 31 | GO:0007017: microtubule-based process | 3.76E-04 |
| 32 | GO:0006518: peptide metabolic process | 4.05E-04 |
| 33 | GO:0016050: vesicle organization | 4.05E-04 |
| 34 | GO:0043572: plastid fission | 5.82E-04 |
| 35 | GO:0071484: cellular response to light intensity | 5.82E-04 |
| 36 | GO:0009152: purine ribonucleotide biosynthetic process | 5.82E-04 |
| 37 | GO:0046653: tetrahydrofolate metabolic process | 5.82E-04 |
| 38 | GO:0080170: hydrogen peroxide transmembrane transport | 5.82E-04 |
| 39 | GO:0030104: water homeostasis | 7.73E-04 |
| 40 | GO:0006546: glycine catabolic process | 7.73E-04 |
| 41 | GO:0010021: amylopectin biosynthetic process | 7.73E-04 |
| 42 | GO:0010109: regulation of photosynthesis | 7.73E-04 |
| 43 | GO:0009765: photosynthesis, light harvesting | 7.73E-04 |
| 44 | GO:0045727: positive regulation of translation | 7.73E-04 |
| 45 | GO:0015994: chlorophyll metabolic process | 7.73E-04 |
| 46 | GO:0006564: L-serine biosynthetic process | 9.77E-04 |
| 47 | GO:0031365: N-terminal protein amino acid modification | 9.77E-04 |
| 48 | GO:0006461: protein complex assembly | 9.77E-04 |
| 49 | GO:0009107: lipoate biosynthetic process | 9.77E-04 |
| 50 | GO:0016120: carotene biosynthetic process | 9.77E-04 |
| 51 | GO:0009913: epidermal cell differentiation | 1.19E-03 |
| 52 | GO:0006655: phosphatidylglycerol biosynthetic process | 1.19E-03 |
| 53 | GO:0010337: regulation of salicylic acid metabolic process | 1.19E-03 |
| 54 | GO:0006561: proline biosynthetic process | 1.19E-03 |
| 55 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 1.19E-03 |
| 56 | GO:0042549: photosystem II stabilization | 1.19E-03 |
| 57 | GO:0000470: maturation of LSU-rRNA | 1.19E-03 |
| 58 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.43E-03 |
| 59 | GO:0018298: protein-chromophore linkage | 1.51E-03 |
| 60 | GO:0050829: defense response to Gram-negative bacterium | 1.67E-03 |
| 61 | GO:0010444: guard mother cell differentiation | 1.67E-03 |
| 62 | GO:0006400: tRNA modification | 1.67E-03 |
| 63 | GO:0009772: photosynthetic electron transport in photosystem II | 1.67E-03 |
| 64 | GO:0010196: nonphotochemical quenching | 1.67E-03 |
| 65 | GO:0009704: de-etiolation | 1.93E-03 |
| 66 | GO:0032508: DNA duplex unwinding | 1.93E-03 |
| 67 | GO:0008610: lipid biosynthetic process | 1.93E-03 |
| 68 | GO:0005978: glycogen biosynthetic process | 1.93E-03 |
| 69 | GO:0009642: response to light intensity | 1.93E-03 |
| 70 | GO:0009409: response to cold | 2.00E-03 |
| 71 | GO:0032544: plastid translation | 2.21E-03 |
| 72 | GO:0015996: chlorophyll catabolic process | 2.21E-03 |
| 73 | GO:0009657: plastid organization | 2.21E-03 |
| 74 | GO:0010206: photosystem II repair | 2.49E-03 |
| 75 | GO:0000373: Group II intron splicing | 2.49E-03 |
| 76 | GO:0005982: starch metabolic process | 2.79E-03 |
| 77 | GO:0006032: chitin catabolic process | 3.10E-03 |
| 78 | GO:0009688: abscisic acid biosynthetic process | 3.10E-03 |
| 79 | GO:0048829: root cap development | 3.10E-03 |
| 80 | GO:0006364: rRNA processing | 3.27E-03 |
| 81 | GO:0009073: aromatic amino acid family biosynthetic process | 3.42E-03 |
| 82 | GO:0009750: response to fructose | 3.42E-03 |
| 83 | GO:0048765: root hair cell differentiation | 3.42E-03 |
| 84 | GO:0000038: very long-chain fatty acid metabolic process | 3.42E-03 |
| 85 | GO:0032259: methylation | 3.95E-03 |
| 86 | GO:0010628: positive regulation of gene expression | 4.09E-03 |
| 87 | GO:0006108: malate metabolic process | 4.09E-03 |
| 88 | GO:0010207: photosystem II assembly | 4.44E-03 |
| 89 | GO:0010143: cutin biosynthetic process | 4.44E-03 |
| 90 | GO:0010020: chloroplast fission | 4.44E-03 |
| 91 | GO:0010053: root epidermal cell differentiation | 4.80E-03 |
| 92 | GO:0009225: nucleotide-sugar metabolic process | 4.80E-03 |
| 93 | GO:0009825: multidimensional cell growth | 4.80E-03 |
| 94 | GO:0010167: response to nitrate | 4.80E-03 |
| 95 | GO:0009768: photosynthesis, light harvesting in photosystem I | 5.95E-03 |
| 96 | GO:0051302: regulation of cell division | 5.95E-03 |
| 97 | GO:0031408: oxylipin biosynthetic process | 6.35E-03 |
| 98 | GO:0003333: amino acid transmembrane transport | 6.35E-03 |
| 99 | GO:0016998: cell wall macromolecule catabolic process | 6.35E-03 |
| 100 | GO:0035428: hexose transmembrane transport | 6.76E-03 |
| 101 | GO:0006633: fatty acid biosynthetic process | 7.28E-03 |
| 102 | GO:0009561: megagametogenesis | 7.61E-03 |
| 103 | GO:0042127: regulation of cell proliferation | 7.61E-03 |
| 104 | GO:0016117: carotenoid biosynthetic process | 8.05E-03 |
| 105 | GO:0042335: cuticle development | 8.49E-03 |
| 106 | GO:0034220: ion transmembrane transport | 8.49E-03 |
| 107 | GO:0009958: positive gravitropism | 8.95E-03 |
| 108 | GO:0010182: sugar mediated signaling pathway | 8.95E-03 |
| 109 | GO:0046323: glucose import | 8.95E-03 |
| 110 | GO:0015986: ATP synthesis coupled proton transport | 9.42E-03 |
| 111 | GO:0009651: response to salt stress | 9.75E-03 |
| 112 | GO:0019252: starch biosynthetic process | 9.90E-03 |
| 113 | GO:0000302: response to reactive oxygen species | 1.04E-02 |
| 114 | GO:0016032: viral process | 1.09E-02 |
| 115 | GO:0009567: double fertilization forming a zygote and endosperm | 1.19E-02 |
| 116 | GO:0009658: chloroplast organization | 1.24E-02 |
| 117 | GO:0007049: cell cycle | 1.39E-02 |
| 118 | GO:0042128: nitrate assimilation | 1.45E-02 |
| 119 | GO:0015995: chlorophyll biosynthetic process | 1.51E-02 |
| 120 | GO:0030244: cellulose biosynthetic process | 1.62E-02 |
| 121 | GO:0010311: lateral root formation | 1.68E-02 |
| 122 | GO:0010218: response to far red light | 1.74E-02 |
| 123 | GO:0009631: cold acclimation | 1.80E-02 |
| 124 | GO:0006865: amino acid transport | 1.86E-02 |
| 125 | GO:0009637: response to blue light | 1.92E-02 |
| 126 | GO:0009853: photorespiration | 1.92E-02 |
| 127 | GO:0006099: tricarboxylic acid cycle | 1.98E-02 |
| 128 | GO:0009414: response to water deprivation | 2.05E-02 |
| 129 | GO:0009408: response to heat | 2.28E-02 |
| 130 | GO:0010114: response to red light | 2.30E-02 |
| 131 | GO:0009926: auxin polar transport | 2.30E-02 |
| 132 | GO:0009809: lignin biosynthetic process | 2.84E-02 |
| 133 | GO:0006417: regulation of translation | 3.06E-02 |
| 134 | GO:0048316: seed development | 3.28E-02 |
| 135 | GO:0009624: response to nematode | 3.66E-02 |
| 136 | GO:0051726: regulation of cell cycle | 3.81E-02 |
| 137 | GO:0055114: oxidation-reduction process | 4.01E-02 |
| 138 | GO:0009416: response to light stimulus | 4.03E-02 |
| 139 | GO:0051301: cell division | 4.39E-02 |
| 140 | GO:0009058: biosynthetic process | 4.45E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity | 0.00E+00 |
| 2 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 3 | GO:0045436: lycopene beta cyclase activity | 0.00E+00 |
| 4 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 5 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 6 | GO:0010301: xanthoxin dehydrogenase activity | 0.00E+00 |
| 7 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 8 | GO:0042586: peptide deformylase activity | 1.04E-04 |
| 9 | GO:0045485: omega-6 fatty acid desaturase activity | 1.04E-04 |
| 10 | GO:0034256: chlorophyll(ide) b reductase activity | 1.04E-04 |
| 11 | GO:0004333: fumarate hydratase activity | 1.04E-04 |
| 12 | GO:0050139: nicotinate-N-glucosyltransferase activity | 1.04E-04 |
| 13 | GO:0018708: thiol S-methyltransferase activity | 2.44E-04 |
| 14 | GO:0003844: 1,4-alpha-glucan branching enzyme activity | 2.44E-04 |
| 15 | GO:0047746: chlorophyllase activity | 2.44E-04 |
| 16 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 2.44E-04 |
| 17 | GO:0004617: phosphoglycerate dehydrogenase activity | 2.44E-04 |
| 18 | GO:0005528: FK506 binding | 3.40E-04 |
| 19 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 4.05E-04 |
| 20 | GO:0070402: NADPH binding | 4.05E-04 |
| 21 | GO:0008864: formyltetrahydrofolate deformylase activity | 4.05E-04 |
| 22 | GO:0043169: cation binding | 4.05E-04 |
| 23 | GO:0016992: lipoate synthase activity | 4.05E-04 |
| 24 | GO:0016746: transferase activity, transferring acyl groups | 5.93E-04 |
| 25 | GO:0019843: rRNA binding | 7.57E-04 |
| 26 | GO:0043495: protein anchor | 7.73E-04 |
| 27 | GO:0050378: UDP-glucuronate 4-epimerase activity | 7.73E-04 |
| 28 | GO:0042277: peptide binding | 7.73E-04 |
| 29 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 7.73E-04 |
| 30 | GO:0010011: auxin binding | 7.73E-04 |
| 31 | GO:0010328: auxin influx transmembrane transporter activity | 7.73E-04 |
| 32 | GO:0016597: amino acid binding | 1.10E-03 |
| 33 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 1.19E-03 |
| 34 | GO:0004629: phospholipase C activity | 1.19E-03 |
| 35 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 1.19E-03 |
| 36 | GO:0016168: chlorophyll binding | 1.23E-03 |
| 37 | GO:0004435: phosphatidylinositol phospholipase C activity | 1.43E-03 |
| 38 | GO:0019899: enzyme binding | 1.67E-03 |
| 39 | GO:0004033: aldo-keto reductase (NADP) activity | 1.93E-03 |
| 40 | GO:0043022: ribosome binding | 1.93E-03 |
| 41 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 2.21E-03 |
| 42 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.84E-03 |
| 43 | GO:0004568: chitinase activity | 3.10E-03 |
| 44 | GO:0015386: potassium:proton antiporter activity | 3.42E-03 |
| 45 | GO:0004022: alcohol dehydrogenase (NAD) activity | 4.09E-03 |
| 46 | GO:0031072: heat shock protein binding | 4.09E-03 |
| 47 | GO:0008266: poly(U) RNA binding | 4.44E-03 |
| 48 | GO:0016787: hydrolase activity | 4.47E-03 |
| 49 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 5.18E-03 |
| 50 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 5.18E-03 |
| 51 | GO:0031409: pigment binding | 5.18E-03 |
| 52 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 5.18E-03 |
| 53 | GO:0003824: catalytic activity | 5.87E-03 |
| 54 | GO:0015079: potassium ion transmembrane transporter activity | 5.95E-03 |
| 55 | GO:0004176: ATP-dependent peptidase activity | 6.35E-03 |
| 56 | GO:0022891: substrate-specific transmembrane transporter activity | 7.18E-03 |
| 57 | GO:0016491: oxidoreductase activity | 7.73E-03 |
| 58 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 8.95E-03 |
| 59 | GO:0005355: glucose transmembrane transporter activity | 9.42E-03 |
| 60 | GO:0050662: coenzyme binding | 9.42E-03 |
| 61 | GO:0016791: phosphatase activity | 1.19E-02 |
| 62 | GO:0008168: methyltransferase activity | 1.19E-02 |
| 63 | GO:0005200: structural constituent of cytoskeleton | 1.24E-02 |
| 64 | GO:0008483: transaminase activity | 1.24E-02 |
| 65 | GO:0015250: water channel activity | 1.35E-02 |
| 66 | GO:0030247: polysaccharide binding | 1.51E-02 |
| 67 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 1.74E-02 |
| 68 | GO:0004222: metalloendopeptidase activity | 1.74E-02 |
| 69 | GO:0003746: translation elongation factor activity | 1.92E-02 |
| 70 | GO:0004871: signal transducer activity | 1.93E-02 |
| 71 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.11E-02 |
| 72 | GO:0015293: symporter activity | 2.50E-02 |
| 73 | GO:0051287: NAD binding | 2.64E-02 |
| 74 | GO:0003777: microtubule motor activity | 3.06E-02 |
| 75 | GO:0015171: amino acid transmembrane transporter activity | 3.06E-02 |
| 76 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 3.43E-02 |
| 77 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 3.43E-02 |
| 78 | GO:0051082: unfolded protein binding | 3.66E-02 |
| 79 | GO:0003723: RNA binding | 4.07E-02 |
| 80 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 4.37E-02 |
| 81 | GO:0016829: lyase activity | 4.54E-02 |
| 82 | GO:0015144: carbohydrate transmembrane transporter activity | 4.87E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043235: receptor complex | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 1.40E-34 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 1.73E-18 |
| 4 | GO:0009534: chloroplast thylakoid | 9.89E-18 |
| 5 | GO:0009941: chloroplast envelope | 3.56E-13 |
| 6 | GO:0009570: chloroplast stroma | 5.89E-11 |
| 7 | GO:0009579: thylakoid | 1.17E-10 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 4.96E-09 |
| 9 | GO:0031977: thylakoid lumen | 1.18E-05 |
| 10 | GO:0031969: chloroplast membrane | 4.68E-05 |
| 11 | GO:0045239: tricarboxylic acid cycle enzyme complex | 1.04E-04 |
| 12 | GO:0031361: integral component of thylakoid membrane | 1.04E-04 |
| 13 | GO:0043674: columella | 1.04E-04 |
| 14 | GO:0030095: chloroplast photosystem II | 2.43E-04 |
| 15 | GO:0042651: thylakoid membrane | 3.76E-04 |
| 16 | GO:0033281: TAT protein transport complex | 4.05E-04 |
| 17 | GO:0015630: microtubule cytoskeleton | 5.82E-04 |
| 18 | GO:0010287: plastoglobule | 7.08E-04 |
| 19 | GO:0009523: photosystem II | 7.69E-04 |
| 20 | GO:0030286: dynein complex | 7.73E-04 |
| 21 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 1.19E-03 |
| 22 | GO:0042807: central vacuole | 1.67E-03 |
| 23 | GO:0009986: cell surface | 1.67E-03 |
| 24 | GO:0009533: chloroplast stromal thylakoid | 1.67E-03 |
| 25 | GO:0009501: amyloplast | 1.93E-03 |
| 26 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.49E-03 |
| 27 | GO:0032040: small-subunit processome | 3.75E-03 |
| 28 | GO:0009508: plastid chromosome | 4.09E-03 |
| 29 | GO:0000312: plastid small ribosomal subunit | 4.44E-03 |
| 30 | GO:0009706: chloroplast inner membrane | 4.64E-03 |
| 31 | GO:0030076: light-harvesting complex | 4.80E-03 |
| 32 | GO:0005875: microtubule associated complex | 5.18E-03 |
| 33 | GO:0009654: photosystem II oxygen evolving complex | 5.95E-03 |
| 34 | GO:0009522: photosystem I | 9.42E-03 |
| 35 | GO:0019898: extrinsic component of membrane | 9.90E-03 |
| 36 | GO:0032580: Golgi cisterna membrane | 1.19E-02 |
| 37 | GO:0010319: stromule | 1.24E-02 |
| 38 | GO:0009295: nucleoid | 1.24E-02 |
| 39 | GO:0030529: intracellular ribonucleoprotein complex | 1.35E-02 |
| 40 | GO:0016020: membrane | 1.55E-02 |
| 41 | GO:0009707: chloroplast outer membrane | 1.62E-02 |