co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G65010

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006399: tRNA metabolic process	0.00E+00
2	GO:0008064: regulation of actin polymerization or depolymerization	0.00E+00
3	GO:0070125: mitochondrial translational elongation	0.00E+00
4	GO:0051493: regulation of cytoskeleton organization	0.00E+00
5	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
6	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
7	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
8	GO:0042407: cristae formation	0.00E+00
9	GO:0007638: mechanosensory behavior	0.00E+00
10	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
11	GO:0009658: chloroplast organization	8.60E-08
12	GO:0006412: translation	1.24E-05
13	GO:0010067: procambium histogenesis	9.02E-05
14	GO:0042026: protein refolding	9.02E-05
15	GO:0000413: protein peptidyl-prolyl isomerization	1.06E-04
16	GO:0042254: ribosome biogenesis	1.83E-04
17	GO:0060627: regulation of vesicle-mediated transport	1.91E-04
18	GO:0010442: guard cell morphogenesis	1.91E-04
19	GO:0006426: glycyl-tRNA aminoacylation	1.91E-04
20	GO:0032544: plastid translation	1.91E-04
21	GO:1900865: chloroplast RNA modification	2.78E-04
22	GO:0006816: calcium ion transport	3.78E-04
23	GO:0006415: translational termination	3.78E-04
24	GO:0080183: response to photooxidative stress	4.29E-04
25	GO:2000123: positive regulation of stomatal complex development	4.29E-04
26	GO:0010270: photosystem II oxygen evolving complex assembly	4.29E-04
27	GO:0052541: plant-type cell wall cellulose metabolic process	4.29E-04
28	GO:0006695: cholesterol biosynthetic process	4.29E-04
29	GO:0006423: cysteinyl-tRNA aminoacylation	4.29E-04
30	GO:0010223: secondary shoot formation	5.55E-04
31	GO:0010020: chloroplast fission	5.55E-04
32	GO:0006457: protein folding	5.83E-04
33	GO:0090506: axillary shoot meristem initiation	6.99E-04
34	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	6.99E-04
35	GO:0061077: chaperone-mediated protein folding	9.21E-04
36	GO:0043572: plastid fission	9.97E-04
37	GO:2001141: regulation of RNA biosynthetic process	9.97E-04
38	GO:0007231: osmosensory signaling pathway	9.97E-04
39	GO:0051085: chaperone mediated protein folding requiring cofactor	9.97E-04
40	GO:0006241: CTP biosynthetic process	9.97E-04
41	GO:0006165: nucleoside diphosphate phosphorylation	9.97E-04
42	GO:0006228: UTP biosynthetic process	9.97E-04
43	GO:0010088: phloem development	9.97E-04
44	GO:0006424: glutamyl-tRNA aminoacylation	9.97E-04
45	GO:0001944: vasculature development	1.09E-03
46	GO:0010089: xylem development	1.18E-03
47	GO:0016117: carotenoid biosynthetic process	1.28E-03
48	GO:0009735: response to cytokinin	1.28E-03
49	GO:0051322: anaphase	1.32E-03
50	GO:0009765: photosynthesis, light harvesting	1.32E-03
51	GO:0006183: GTP biosynthetic process	1.32E-03
52	GO:0033500: carbohydrate homeostasis	1.32E-03
53	GO:2000038: regulation of stomatal complex development	1.32E-03
54	GO:0042335: cuticle development	1.38E-03
55	GO:0016123: xanthophyll biosynthetic process	1.68E-03
56	GO:0010375: stomatal complex patterning	1.68E-03
57	GO:0048359: mucilage metabolic process involved in seed coat development	1.68E-03
58	GO:0016120: carotene biosynthetic process	1.68E-03
59	GO:0032543: mitochondrial translation	1.68E-03
60	GO:0045038: protein import into chloroplast thylakoid membrane	1.68E-03
61	GO:0045454: cell redox homeostasis	1.91E-03
62	GO:0007264: small GTPase mediated signal transduction	1.95E-03
63	GO:0042549: photosystem II stabilization	2.07E-03
64	GO:0010358: leaf shaping	2.07E-03
65	GO:0016554: cytidine to uridine editing	2.07E-03
66	GO:0006828: manganese ion transport	2.07E-03
67	GO:0032973: amino acid export	2.07E-03
68	GO:0010190: cytochrome b6f complex assembly	2.07E-03
69	GO:0006014: D-ribose metabolic process	2.07E-03
70	GO:0007267: cell-cell signaling	2.34E-03
71	GO:0010555: response to mannitol	2.49E-03
72	GO:0006458: 'de novo' protein folding	2.49E-03
73	GO:0010027: thylakoid membrane organization	2.63E-03
74	GO:0045995: regulation of embryonic development	2.93E-03
75	GO:0048528: post-embryonic root development	2.93E-03
76	GO:0043090: amino acid import	2.93E-03
77	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.93E-03
78	GO:0015995: chlorophyll biosynthetic process	3.09E-03
79	GO:0000028: ribosomal small subunit assembly	3.40E-03
80	GO:0048564: photosystem I assembly	3.40E-03
81	GO:0010928: regulation of auxin mediated signaling pathway	3.40E-03
82	GO:0009642: response to light intensity	3.40E-03
83	GO:0009932: cell tip growth	3.88E-03
84	GO:0071482: cellular response to light stimulus	3.88E-03
85	GO:0009657: plastid organization	3.88E-03
86	GO:0015780: nucleotide-sugar transport	4.40E-03
87	GO:0045337: farnesyl diphosphate biosynthetic process	4.40E-03
88	GO:0010206: photosystem II repair	4.40E-03
89	GO:0080144: amino acid homeostasis	4.40E-03
90	GO:0033384: geranyl diphosphate biosynthetic process	4.40E-03
91	GO:0043067: regulation of programmed cell death	4.93E-03
92	GO:0006779: porphyrin-containing compound biosynthetic process	4.93E-03
93	GO:0042761: very long-chain fatty acid biosynthetic process	4.93E-03
94	GO:0006782: protoporphyrinogen IX biosynthetic process	5.48E-03
95	GO:0018119: peptidyl-cysteine S-nitrosylation	6.06E-03
96	GO:0009773: photosynthetic electron transport in photosystem I	6.06E-03
97	GO:0043085: positive regulation of catalytic activity	6.06E-03
98	GO:0006352: DNA-templated transcription, initiation	6.06E-03
99	GO:0045037: protein import into chloroplast stroma	6.66E-03
100	GO:0042538: hyperosmotic salinity response	6.99E-03
101	GO:0006813: potassium ion transport	7.50E-03
102	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	7.70E-03
103	GO:0010207: photosystem II assembly	7.91E-03
104	GO:0070588: calcium ion transmembrane transport	8.57E-03
105	GO:0015979: photosynthesis	8.73E-03
106	GO:0009409: response to cold	8.76E-03
107	GO:0006071: glycerol metabolic process	9.25E-03
108	GO:0010025: wax biosynthetic process	9.25E-03
109	GO:0019344: cysteine biosynthetic process	9.94E-03
110	GO:0000027: ribosomal large subunit assembly	9.94E-03
111	GO:0007010: cytoskeleton organization	9.94E-03
112	GO:0006418: tRNA aminoacylation for protein translation	1.07E-02
113	GO:0010026: trichome differentiation	1.07E-02
114	GO:0007017: microtubule-based process	1.07E-02
115	GO:0007005: mitochondrion organization	1.21E-02
116	GO:0080092: regulation of pollen tube growth	1.21E-02
117	GO:0009411: response to UV	1.29E-02
118	GO:0019722: calcium-mediated signaling	1.37E-02
119	GO:0010087: phloem or xylem histogenesis	1.53E-02
120	GO:0000226: microtubule cytoskeleton organization	1.53E-02
121	GO:0009790: embryo development	1.57E-02
122	GO:0010197: polar nucleus fusion	1.62E-02
123	GO:0009741: response to brassinosteroid	1.62E-02
124	GO:0010268: brassinosteroid homeostasis	1.62E-02
125	GO:0008360: regulation of cell shape	1.62E-02
126	GO:0009958: positive gravitropism	1.62E-02
127	GO:0006662: glycerol ether metabolic process	1.62E-02
128	GO:0007018: microtubule-based movement	1.70E-02
129	GO:0006413: translational initiation	1.73E-02
130	GO:0019252: starch biosynthetic process	1.79E-02
131	GO:0042742: defense response to bacterium	1.82E-02
132	GO:0016132: brassinosteroid biosynthetic process	1.88E-02
133	GO:0080156: mitochondrial mRNA modification	1.88E-02
134	GO:0016125: sterol metabolic process	2.15E-02
135	GO:0009793: embryo development ending in seed dormancy	2.20E-02
136	GO:0010286: heat acclimation	2.25E-02
137	GO:0071805: potassium ion transmembrane transport	2.25E-02
138	GO:0000910: cytokinesis	2.34E-02
139	GO:0009627: systemic acquired resistance	2.64E-02
140	GO:0008219: cell death	2.95E-02
141	GO:0048481: plant ovule development	2.95E-02
142	GO:0006811: ion transport	3.16E-02
143	GO:0048366: leaf development	3.38E-02
144	GO:0009637: response to blue light	3.49E-02
145	GO:0009867: jasmonic acid mediated signaling pathway	3.49E-02
146	GO:0016051: carbohydrate biosynthetic process	3.49E-02
147	GO:0006508: proteolysis	3.53E-02
148	GO:0034599: cellular response to oxidative stress	3.60E-02
149	GO:0042542: response to hydrogen peroxide	4.06E-02
150	GO:0010114: response to red light	4.18E-02
151	GO:0008283: cell proliferation	4.18E-02
152	GO:0008643: carbohydrate transport	4.41E-02
153	GO:0006869: lipid transport	4.66E-02

Rank	GO Term	Adjusted P value
1	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
2	GO:0005048: signal sequence binding	0.00E+00
3	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
4	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
5	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
6	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
7	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
8	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
9	GO:0019843: rRNA binding	3.95E-09
10	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.32E-07
11	GO:0003735: structural constituent of ribosome	5.81E-07
12	GO:0051920: peroxiredoxin activity	1.02E-06
13	GO:0016209: antioxidant activity	2.56E-06
14	GO:0016149: translation release factor activity, codon specific	1.47E-05
15	GO:0004820: glycine-tRNA ligase activity	1.91E-04
16	GO:0010012: steroid 22-alpha hydroxylase activity	1.91E-04
17	GO:0003867: 4-aminobutyrate transaminase activity	1.91E-04
18	GO:0003747: translation release factor activity	2.33E-04
19	GO:0044183: protein binding involved in protein folding	3.78E-04
20	GO:0005089: Rho guanyl-nucleotide exchange factor activity	3.78E-04
21	GO:0004817: cysteine-tRNA ligase activity	4.29E-04
22	GO:0003924: GTPase activity	5.49E-04
23	GO:0008017: microtubule binding	5.82E-04
24	GO:0030267: glyoxylate reductase (NADP) activity	6.99E-04
25	GO:0002161: aminoacyl-tRNA editing activity	6.99E-04
26	GO:0005528: FK506 binding	7.65E-04
27	GO:0004550: nucleoside diphosphate kinase activity	9.97E-04
28	GO:0008097: 5S rRNA binding	9.97E-04
29	GO:0001053: plastid sigma factor activity	1.32E-03
30	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	1.32E-03
31	GO:0016987: sigma factor activity	1.32E-03
32	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.68E-03
33	GO:0004040: amidase activity	1.68E-03
34	GO:0008237: metallopeptidase activity	2.34E-03
35	GO:0004747: ribokinase activity	2.49E-03
36	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	2.49E-03
37	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	2.49E-03
38	GO:0016831: carboxy-lyase activity	2.93E-03
39	GO:0008236: serine-type peptidase activity	3.25E-03
40	GO:0008312: 7S RNA binding	3.40E-03
41	GO:0008865: fructokinase activity	3.40E-03
42	GO:0005525: GTP binding	3.59E-03
43	GO:0004222: metalloendopeptidase activity	3.77E-03
44	GO:0003746: translation elongation factor activity	4.33E-03
45	GO:0004337: geranyltranstransferase activity	4.40E-03
46	GO:0008889: glycerophosphodiester phosphodiesterase activity	4.40E-03
47	GO:0005524: ATP binding	4.82E-03
48	GO:0005384: manganese ion transmembrane transporter activity	4.93E-03
49	GO:0008047: enzyme activator activity	5.48E-03
50	GO:0004601: peroxidase activity	5.61E-03
51	GO:0004161: dimethylallyltranstransferase activity	6.06E-03
52	GO:0000049: tRNA binding	6.66E-03
53	GO:0015095: magnesium ion transmembrane transporter activity	7.28E-03
54	GO:0005262: calcium channel activity	7.28E-03
55	GO:0008081: phosphoric diester hydrolase activity	7.28E-03
56	GO:0003777: microtubule motor activity	8.31E-03
57	GO:0051082: unfolded protein binding	1.07E-02
58	GO:0015079: potassium ion transmembrane transporter activity	1.07E-02
59	GO:0008324: cation transmembrane transporter activity	1.07E-02
60	GO:0004176: ATP-dependent peptidase activity	1.14E-02
61	GO:0033612: receptor serine/threonine kinase binding	1.14E-02
62	GO:0009055: electron carrier activity	1.32E-02
63	GO:0008514: organic anion transmembrane transporter activity	1.37E-02
64	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.38E-02
65	GO:0047134: protein-disulfide reductase activity	1.45E-02
66	GO:0004812: aminoacyl-tRNA ligase activity	1.45E-02
67	GO:0005102: receptor binding	1.45E-02
68	GO:0004791: thioredoxin-disulfide reductase activity	1.70E-02
69	GO:0019901: protein kinase binding	1.79E-02
70	GO:0004518: nuclease activity	1.97E-02
71	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.06E-02
72	GO:0003743: translation initiation factor activity	2.17E-02
73	GO:0016722: oxidoreductase activity, oxidizing metal ions	2.25E-02
74	GO:0005200: structural constituent of cytoskeleton	2.25E-02
75	GO:0016740: transferase activity	3.20E-02
76	GO:0004672: protein kinase activity	3.21E-02
77	GO:0030145: manganese ion binding	3.27E-02
78	GO:0003729: mRNA binding	3.27E-02
79	GO:0005507: copper ion binding	3.88E-02
80	GO:0005516: calmodulin binding	4.15E-02
81	GO:0051537: 2 iron, 2 sulfur cluster binding	4.41E-02
82	GO:0043621: protein self-association	4.41E-02
83	GO:0005198: structural molecule activity	4.54E-02

Rank	GO Term	Adjusted P value
1	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
2	GO:0070971: endoplasmic reticulum exit site	0.00E+00
3	GO:0009507: chloroplast	4.33E-31
4	GO:0009570: chloroplast stroma	1.81E-24
5	GO:0009941: chloroplast envelope	3.35E-17
6	GO:0009543: chloroplast thylakoid lumen	3.94E-12
7	GO:0031977: thylakoid lumen	6.96E-11
8	GO:0009579: thylakoid	1.07E-08
9	GO:0046658: anchored component of plasma membrane	4.60E-08
10	GO:0009535: chloroplast thylakoid membrane	1.35E-07
11	GO:0005840: ribosome	1.47E-05
12	GO:0005874: microtubule	3.19E-05
13	GO:0031225: anchored component of membrane	3.43E-05
14	GO:0019898: extrinsic component of membrane	1.46E-04
15	GO:0009547: plastid ribosome	1.91E-04
16	GO:0048046: apoplast	2.23E-04
17	GO:0010319: stromule	2.30E-04
18	GO:0080085: signal recognition particle, chloroplast targeting	4.29E-04
19	GO:0000311: plastid large ribosomal subunit	4.34E-04
20	GO:0009534: chloroplast thylakoid	5.07E-04
21	GO:0030095: chloroplast photosystem II	5.55E-04
22	GO:0009654: photosystem II oxygen evolving complex	8.41E-04
23	GO:0072686: mitotic spindle	1.68E-03
24	GO:0000793: condensed chromosome	2.07E-03
25	GO:0009505: plant-type cell wall	2.20E-03
26	GO:0000794: condensed nuclear chromosome	2.93E-03
27	GO:0009533: chloroplast stromal thylakoid	2.93E-03
28	GO:0005886: plasma membrane	3.34E-03
29	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	3.88E-03
30	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.40E-03
31	GO:0045298: tubulin complex	4.40E-03
32	GO:0000922: spindle pole	4.40E-03
33	GO:0005819: spindle	4.72E-03
34	GO:0055028: cortical microtubule	5.48E-03
35	GO:0016324: apical plasma membrane	5.48E-03
36	GO:0022626: cytosolic ribosome	5.86E-03
37	GO:0031012: extracellular matrix	7.28E-03
38	GO:0009574: preprophase band	7.28E-03
39	GO:0009536: plastid	7.38E-03
40	GO:0031969: chloroplast membrane	7.38E-03
41	GO:0022625: cytosolic large ribosomal subunit	7.87E-03
42	GO:0000312: plastid small ribosomal subunit	7.91E-03
43	GO:0005875: microtubule associated complex	9.25E-03
44	GO:0009706: chloroplast inner membrane	1.07E-02
45	GO:0042651: thylakoid membrane	1.07E-02
46	GO:0009532: plastid stroma	1.14E-02
47	GO:0005871: kinesin complex	1.45E-02
48	GO:0016020: membrane	4.49E-02