co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G64640

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:0015739: sialic acid transport	0.00E+00
3	GO:0006399: tRNA metabolic process	0.00E+00
4	GO:0044154: histone H3-K14 acetylation	0.00E+00
5	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
6	GO:0033494: ferulate metabolic process	0.00E+00
7	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
8	GO:0007638: mechanosensory behavior	0.00E+00
9	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
10	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
11	GO:0043972: histone H3-K23 acetylation	0.00E+00
12	GO:0009658: chloroplast organization	2.44E-07
13	GO:0042254: ribosome biogenesis	3.82E-06
14	GO:0015979: photosynthesis	9.51E-05
15	GO:0000413: protein peptidyl-prolyl isomerization	1.55E-04
16	GO:0042335: cuticle development	1.55E-04
17	GO:0042371: vitamin K biosynthetic process	2.29E-04
18	GO:0071588: hydrogen peroxide mediated signaling pathway	2.29E-04
19	GO:0043971: histone H3-K18 acetylation	2.29E-04
20	GO:1904966: positive regulation of vitamin E biosynthetic process	2.29E-04
21	GO:1904964: positive regulation of phytol biosynthetic process	2.29E-04
22	GO:0032544: plastid translation	2.51E-04
23	GO:0006810: transport	4.66E-04
24	GO:0009773: photosynthetic electron transport in photosystem I	4.90E-04
25	GO:0006415: translational termination	4.90E-04
26	GO:0006412: translation	4.99E-04
27	GO:0006695: cholesterol biosynthetic process	5.10E-04
28	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.10E-04
29	GO:0006633: fatty acid biosynthetic process	7.03E-04
30	GO:0006869: lipid transport	7.14E-04
31	GO:0010020: chloroplast fission	7.15E-04
32	GO:0090506: axillary shoot meristem initiation	8.29E-04
33	GO:2001141: regulation of RNA biosynthetic process	1.18E-03
34	GO:0007231: osmosensory signaling pathway	1.18E-03
35	GO:0051639: actin filament network formation	1.18E-03
36	GO:0061077: chaperone-mediated protein folding	1.18E-03
37	GO:0009650: UV protection	1.18E-03
38	GO:0010088: phloem development	1.18E-03
39	GO:0009855: determination of bilateral symmetry	1.18E-03
40	GO:0043572: plastid fission	1.18E-03
41	GO:0010037: response to carbon dioxide	1.57E-03
42	GO:0015976: carbon utilization	1.57E-03
43	GO:0051764: actin crosslink formation	1.57E-03
44	GO:0009765: photosynthesis, light harvesting	1.57E-03
45	GO:2000122: negative regulation of stomatal complex development	1.57E-03
46	GO:0033500: carbohydrate homeostasis	1.57E-03
47	GO:0010087: phloem or xylem histogenesis	1.78E-03
48	GO:0009741: response to brassinosteroid	1.92E-03
49	GO:0031365: N-terminal protein amino acid modification	2.01E-03
50	GO:0016123: xanthophyll biosynthetic process	2.01E-03
51	GO:0016120: carotene biosynthetic process	2.01E-03
52	GO:0046785: microtubule polymerization	2.01E-03
53	GO:0071555: cell wall organization	2.39E-03
54	GO:0048759: xylem vessel member cell differentiation	2.48E-03
55	GO:0042549: photosystem II stabilization	2.48E-03
56	GO:0010358: leaf shaping	2.48E-03
57	GO:0032973: amino acid export	2.48E-03
58	GO:0010190: cytochrome b6f complex assembly	2.48E-03
59	GO:0006596: polyamine biosynthetic process	2.48E-03
60	GO:0006014: D-ribose metabolic process	2.48E-03
61	GO:0010583: response to cyclopentenone	2.52E-03
62	GO:0010019: chloroplast-nucleus signaling pathway	2.97E-03
63	GO:0010555: response to mannitol	2.97E-03
64	GO:0009955: adaxial/abaxial pattern specification	2.97E-03
65	GO:0080060: integument development	2.97E-03
66	GO:0010067: procambium histogenesis	2.97E-03
67	GO:0010014: meristem initiation	2.97E-03
68	GO:0042372: phylloquinone biosynthetic process	2.97E-03
69	GO:0009612: response to mechanical stimulus	2.97E-03
70	GO:0010027: thylakoid membrane organization	3.41E-03
71	GO:0043090: amino acid import	3.50E-03
72	GO:0009645: response to low light intensity stimulus	3.50E-03
73	GO:0000082: G1/S transition of mitotic cell cycle	3.50E-03
74	GO:0010444: guard mother cell differentiation	3.50E-03
75	GO:0016042: lipid catabolic process	3.76E-03
76	GO:0010411: xyloglucan metabolic process	4.01E-03
77	GO:0009819: drought recovery	4.06E-03
78	GO:0009642: response to light intensity	4.06E-03
79	GO:0018298: protein-chromophore linkage	4.44E-03
80	GO:0044030: regulation of DNA methylation	4.65E-03
81	GO:0009932: cell tip growth	4.65E-03
82	GO:0071482: cellular response to light stimulus	4.65E-03
83	GO:0009657: plastid organization	4.65E-03
84	GO:0015780: nucleotide-sugar transport	5.27E-03
85	GO:0045337: farnesyl diphosphate biosynthetic process	5.27E-03
86	GO:0090305: nucleic acid phosphodiester bond hydrolysis	5.27E-03
87	GO:0080144: amino acid homeostasis	5.27E-03
88	GO:0033384: geranyl diphosphate biosynthetic process	5.27E-03
89	GO:0009637: response to blue light	5.62E-03
90	GO:0016051: carbohydrate biosynthetic process	5.62E-03
91	GO:0034599: cellular response to oxidative stress	5.88E-03
92	GO:0006779: porphyrin-containing compound biosynthetic process	5.91E-03
93	GO:0042761: very long-chain fatty acid biosynthetic process	5.91E-03
94	GO:0043069: negative regulation of programmed cell death	6.58E-03
95	GO:0006782: protoporphyrinogen IX biosynthetic process	6.58E-03
96	GO:0010114: response to red light	7.25E-03
97	GO:0000038: very long-chain fatty acid metabolic process	7.28E-03
98	GO:0006816: calcium ion transport	7.28E-03
99	GO:0019684: photosynthesis, light reaction	7.28E-03
100	GO:0010072: primary shoot apical meristem specification	7.28E-03
101	GO:0009089: lysine biosynthetic process via diaminopimelate	7.28E-03
102	GO:0043085: positive regulation of catalytic activity	7.28E-03
103	GO:0006352: DNA-templated transcription, initiation	7.28E-03
104	GO:0009826: unidimensional cell growth	7.49E-03
105	GO:0042546: cell wall biogenesis	7.54E-03
106	GO:0009735: response to cytokinin	8.18E-03
107	GO:0006006: glucose metabolic process	8.75E-03
108	GO:0010223: secondary shoot formation	9.52E-03
109	GO:0010143: cutin biosynthetic process	9.52E-03
110	GO:0010207: photosystem II assembly	9.52E-03
111	GO:0019253: reductive pentose-phosphate cycle	9.52E-03
112	GO:0006813: potassium ion transport	9.78E-03
113	GO:0070588: calcium ion transmembrane transport	1.03E-02
114	GO:0080188: RNA-directed DNA methylation	1.03E-02
115	GO:0006833: water transport	1.11E-02
116	GO:0010025: wax biosynthetic process	1.11E-02
117	GO:0006636: unsaturated fatty acid biosynthetic process	1.11E-02
118	GO:0019344: cysteine biosynthetic process	1.20E-02
119	GO:0000027: ribosomal large subunit assembly	1.20E-02
120	GO:0009944: polarity specification of adaxial/abaxial axis	1.20E-02
121	GO:0007010: cytoskeleton organization	1.20E-02
122	GO:0051017: actin filament bundle assembly	1.20E-02
123	GO:0006418: tRNA aminoacylation for protein translation	1.28E-02
124	GO:0007017: microtubule-based process	1.28E-02
125	GO:0009768: photosynthesis, light harvesting in photosystem I	1.28E-02
126	GO:0045454: cell redox homeostasis	1.30E-02
127	GO:0006457: protein folding	1.38E-02
128	GO:0030245: cellulose catabolic process	1.46E-02
129	GO:0016226: iron-sulfur cluster assembly	1.46E-02
130	GO:0001944: vasculature development	1.56E-02
131	GO:0009411: response to UV	1.56E-02
132	GO:0010089: xylem development	1.65E-02
133	GO:0042127: regulation of cell proliferation	1.65E-02
134	GO:0016117: carotenoid biosynthetic process	1.75E-02
135	GO:0034220: ion transmembrane transport	1.85E-02
136	GO:0000271: polysaccharide biosynthetic process	1.85E-02
137	GO:0010268: brassinosteroid homeostasis	1.95E-02
138	GO:0045489: pectin biosynthetic process	1.95E-02
139	GO:0006662: glycerol ether metabolic process	1.95E-02
140	GO:0019252: starch biosynthetic process	2.16E-02
141	GO:0006413: translational initiation	2.25E-02
142	GO:0016132: brassinosteroid biosynthetic process	2.27E-02
143	GO:0000302: response to reactive oxygen species	2.27E-02
144	GO:0010090: trichome morphogenesis	2.48E-02
145	GO:0016125: sterol metabolic process	2.60E-02
146	GO:0071805: potassium ion transmembrane transport	2.71E-02
147	GO:0015995: chlorophyll biosynthetic process	3.31E-02
148	GO:0048481: plant ovule development	3.56E-02
149	GO:0000160: phosphorelay signal transduction system	3.68E-02
150	GO:0009407: toxin catabolic process	3.81E-02
151	GO:0055114: oxidation-reduction process	3.81E-02
152	GO:0010218: response to far red light	3.81E-02
153	GO:0051301: cell division	3.86E-02
154	GO:0010119: regulation of stomatal movement	3.94E-02
155	GO:0009631: cold acclimation	3.94E-02
156	GO:0009867: jasmonic acid mediated signaling pathway	4.21E-02
157	GO:0048366: leaf development	4.39E-02
158	GO:0006839: mitochondrial transport	4.62E-02
159	GO:0006631: fatty acid metabolic process	4.76E-02
160	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.78E-02
161	GO:0046777: protein autophosphorylation	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
2	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
3	GO:0005456: CMP-N-acetylneuraminate transmembrane transporter activity	0.00E+00
4	GO:0010487: thermospermine synthase activity	0.00E+00
5	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
6	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
7	GO:0015136: sialic acid transmembrane transporter activity	0.00E+00
8	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
9	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.88E-08
10	GO:0019843: rRNA binding	2.60E-07
11	GO:0001872: (1->3)-beta-D-glucan binding	2.04E-05
12	GO:0016149: translation release factor activity, codon specific	2.04E-05
13	GO:0005528: FK506 binding	6.15E-05
14	GO:0008289: lipid binding	6.43E-05
15	GO:0003735: structural constituent of ribosome	7.27E-05
16	GO:0051920: peroxiredoxin activity	1.21E-04
17	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.21E-04
18	GO:0016209: antioxidant activity	2.03E-04
19	GO:0010012: steroid 22-alpha hydroxylase activity	2.29E-04
20	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.29E-04
21	GO:0080132: fatty acid alpha-hydroxylase activity	2.29E-04
22	GO:0016768: spermine synthase activity	2.29E-04
23	GO:0003747: translation release factor activity	3.04E-04
24	GO:0016788: hydrolase activity, acting on ester bonds	3.05E-04
25	GO:0042389: omega-3 fatty acid desaturase activity	5.10E-04
26	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	5.10E-04
27	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	5.10E-04
28	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	5.10E-04
29	GO:0005509: calcium ion binding	5.64E-04
30	GO:0030267: glyoxylate reductase (NADP) activity	8.29E-04
31	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	8.29E-04
32	GO:0050734: hydroxycinnamoyltransferase activity	8.29E-04
33	GO:0002161: aminoacyl-tRNA editing activity	8.29E-04
34	GO:0001053: plastid sigma factor activity	1.57E-03
35	GO:0016987: sigma factor activity	1.57E-03
36	GO:1990137: plant seed peroxidase activity	1.57E-03
37	GO:0010385: double-stranded methylated DNA binding	1.57E-03
38	GO:0043495: protein anchor	1.57E-03
39	GO:0004040: amidase activity	2.01E-03
40	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.36E-03
41	GO:0004130: cytochrome-c peroxidase activity	2.48E-03
42	GO:0016208: AMP binding	2.48E-03
43	GO:0016688: L-ascorbate peroxidase activity	2.48E-03
44	GO:0052689: carboxylic ester hydrolase activity	2.52E-03
45	GO:0051753: mannan synthase activity	2.97E-03
46	GO:0004747: ribokinase activity	2.97E-03
47	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	2.97E-03
48	GO:0016722: oxidoreductase activity, oxidizing metal ions	3.04E-03
49	GO:0005338: nucleotide-sugar transmembrane transporter activity	3.50E-03
50	GO:0008235: metalloexopeptidase activity	3.50E-03
51	GO:0019899: enzyme binding	3.50E-03
52	GO:0016168: chlorophyll binding	3.60E-03
53	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.89E-03
54	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.01E-03
55	GO:0030247: polysaccharide binding	4.01E-03
56	GO:0008865: fructokinase activity	4.06E-03
57	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	4.65E-03
58	GO:0008017: microtubule binding	4.78E-03
59	GO:0004337: geranyltranstransferase activity	5.27E-03
60	GO:0008047: enzyme activator activity	6.58E-03
61	GO:0004177: aminopeptidase activity	7.28E-03
62	GO:0004161: dimethylallyltranstransferase activity	7.28E-03
63	GO:0000049: tRNA binding	8.00E-03
64	GO:0004089: carbonate dehydratase activity	8.75E-03
65	GO:0005262: calcium channel activity	8.75E-03
66	GO:0031409: pigment binding	1.11E-02
67	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.11E-02
68	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.11E-02
69	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.11E-02
70	GO:0051536: iron-sulfur cluster binding	1.20E-02
71	GO:0004857: enzyme inhibitor activity	1.20E-02
72	GO:0004650: polygalacturonase activity	1.27E-02
73	GO:0015079: potassium ion transmembrane transporter activity	1.28E-02
74	GO:0008324: cation transmembrane transporter activity	1.28E-02
75	GO:0030599: pectinesterase activity	1.31E-02
76	GO:0004176: ATP-dependent peptidase activity	1.37E-02
77	GO:0033612: receptor serine/threonine kinase binding	1.37E-02
78	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.46E-02
79	GO:0022891: substrate-specific transmembrane transporter activity	1.56E-02
80	GO:0008810: cellulase activity	1.56E-02
81	GO:0047134: protein-disulfide reductase activity	1.75E-02
82	GO:0004812: aminoacyl-tRNA ligase activity	1.75E-02
83	GO:0005102: receptor binding	1.75E-02
84	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.80E-02
85	GO:0004402: histone acetyltransferase activity	1.85E-02
86	GO:0009055: electron carrier activity	1.85E-02
87	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	1.95E-02
88	GO:0004791: thioredoxin-disulfide reductase activity	2.05E-02
89	GO:0004518: nuclease activity	2.37E-02
90	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.48E-02
91	GO:0051015: actin filament binding	2.48E-02
92	GO:0000156: phosphorelay response regulator activity	2.48E-02
93	GO:0008237: metallopeptidase activity	2.71E-02
94	GO:0005200: structural constituent of cytoskeleton	2.71E-02
95	GO:0003743: translation initiation factor activity	2.83E-02
96	GO:0015250: water channel activity	2.94E-02
97	GO:0042802: identical protein binding	3.07E-02
98	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.19E-02
99	GO:0004683: calmodulin-dependent protein kinase activity	3.31E-02
100	GO:0046872: metal ion binding	3.35E-02
101	GO:0004601: peroxidase activity	3.74E-02
102	GO:0004222: metalloendopeptidase activity	3.81E-02
103	GO:0050661: NADP binding	4.62E-02
104	GO:0042393: histone binding	4.62E-02
105	GO:0004364: glutathione transferase activity	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009507: chloroplast	1.07E-24
3	GO:0009543: chloroplast thylakoid lumen	1.23E-14
4	GO:0009570: chloroplast stroma	2.64E-13
5	GO:0009535: chloroplast thylakoid membrane	1.03E-12
6	GO:0009941: chloroplast envelope	7.12E-12
7	GO:0031977: thylakoid lumen	2.07E-10
8	GO:0009579: thylakoid	3.42E-09
9	GO:0046658: anchored component of plasma membrane	1.31E-07
10	GO:0048046: apoplast	1.42E-06
11	GO:0031225: anchored component of membrane	1.56E-06
12	GO:0009654: photosystem II oxygen evolving complex	2.14E-06
13	GO:0005840: ribosome	5.95E-06
14	GO:0019898: extrinsic component of membrane	1.09E-05
15	GO:0009505: plant-type cell wall	7.07E-05
16	GO:0009534: chloroplast thylakoid	2.02E-04
17	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.29E-04
18	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.04E-04
19	GO:0005886: plasma membrane	3.42E-04
20	GO:0042170: plastid membrane	5.10E-04
21	GO:0005618: cell wall	6.40E-04
22	GO:0030095: chloroplast photosystem II	7.15E-04
23	GO:0042651: thylakoid membrane	1.08E-03
24	GO:0032432: actin filament bundle	1.18E-03
25	GO:0005874: microtubule	2.06E-03
26	GO:0031969: chloroplast membrane	2.17E-03
27	GO:0009706: chloroplast inner membrane	2.25E-03
28	GO:0009533: chloroplast stromal thylakoid	3.50E-03
29	GO:0005811: lipid particle	4.65E-03
30	GO:0015934: large ribosomal subunit	5.13E-03
31	GO:0045298: tubulin complex	5.27E-03
32	GO:0055028: cortical microtubule	6.58E-03
33	GO:0005884: actin filament	7.28E-03
34	GO:0009506: plasmodesma	7.57E-03
35	GO:0000311: plastid large ribosomal subunit	8.00E-03
36	GO:0030076: light-harvesting complex	1.03E-02
37	GO:0005875: microtubule associated complex	1.11E-02
38	GO:0009532: plastid stroma	1.37E-02
39	GO:0010287: plastoglobule	1.66E-02
40	GO:0016020: membrane	1.71E-02
41	GO:0009522: photosystem I	2.05E-02
42	GO:0009523: photosystem II	2.16E-02
43	GO:0005576: extracellular region	2.64E-02
44	GO:0005778: peroxisomal membrane	2.71E-02
45	GO:0010319: stromule	2.71E-02
46	GO:0009536: plastid	3.63E-02
47	GO:0005819: spindle	4.48E-02