Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G64150

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006399: tRNA metabolic process0.00E+00
2GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
3GO:0070125: mitochondrial translational elongation0.00E+00
4GO:0002184: cytoplasmic translational termination0.00E+00
5GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
6GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
7GO:0016553: base conversion or substitution editing0.00E+00
8GO:0090470: shoot organ boundary specification0.00E+00
9GO:0015805: S-adenosyl-L-methionine transport0.00E+00
10GO:0061635: regulation of protein complex stability0.00E+00
11GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
12GO:0006642: triglyceride mobilization0.00E+00
13GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
14GO:0009658: chloroplast organization5.57E-09
15GO:0006695: cholesterol biosynthetic process4.28E-06
16GO:0015979: photosynthesis4.58E-06
17GO:0071482: cellular response to light stimulus1.20E-05
18GO:0010020: chloroplast fission6.96E-05
19GO:0006418: tRNA aminoacylation for protein translation1.33E-04
20GO:0042549: photosystem II stabilization1.39E-04
21GO:0046166: glyceraldehyde-3-phosphate biosynthetic process3.07E-04
22GO:0042371: vitamin K biosynthetic process3.07E-04
23GO:0006430: lysyl-tRNA aminoacylation3.07E-04
24GO:0043489: RNA stabilization3.07E-04
25GO:1904966: positive regulation of vitamin E biosynthetic process3.07E-04
26GO:1904964: positive regulation of phytol biosynthetic process3.07E-04
27GO:0048564: photosystem I assembly3.13E-04
28GO:0009657: plastid organization3.84E-04
29GO:0032544: plastid translation3.84E-04
30GO:0000373: Group II intron splicing4.63E-04
31GO:0045337: farnesyl diphosphate biosynthetic process4.63E-04
32GO:0033384: geranyl diphosphate biosynthetic process4.63E-04
33GO:1900865: chloroplast RNA modification5.47E-04
34GO:0006457: protein folding6.45E-04
35GO:0006568: tryptophan metabolic process6.71E-04
36GO:0043039: tRNA aminoacylation6.71E-04
37GO:1902326: positive regulation of chlorophyll biosynthetic process6.71E-04
38GO:0034755: iron ion transmembrane transport6.71E-04
39GO:0043085: positive regulation of catalytic activity7.36E-04
40GO:0006352: DNA-templated transcription, initiation7.36E-04
41GO:0006415: translational termination7.36E-04
42GO:0015995: chlorophyll biosynthetic process8.01E-04
43GO:0018298: protein-chromophore linkage9.09E-04
44GO:0006094: gluconeogenesis9.50E-04
45GO:0010207: photosystem II assembly1.07E-03
46GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.09E-03
47GO:0032504: multicellular organism reproduction1.09E-03
48GO:0090506: axillary shoot meristem initiation1.09E-03
49GO:0019563: glycerol catabolic process1.09E-03
50GO:0010581: regulation of starch biosynthetic process1.09E-03
51GO:0090351: seedling development1.19E-03
52GO:0009853: photorespiration1.22E-03
53GO:0045454: cell redox homeostasis1.27E-03
54GO:0016556: mRNA modification1.56E-03
55GO:2001141: regulation of RNA biosynthetic process1.56E-03
56GO:0010371: regulation of gibberellin biosynthetic process1.56E-03
57GO:0009152: purine ribonucleotide biosynthetic process1.56E-03
58GO:0046653: tetrahydrofolate metabolic process1.56E-03
59GO:0006241: CTP biosynthetic process1.56E-03
60GO:0019048: modulation by virus of host morphology or physiology1.56E-03
61GO:0006424: glutamyl-tRNA aminoacylation1.56E-03
62GO:0006165: nucleoside diphosphate phosphorylation1.56E-03
63GO:0006228: UTP biosynthetic process1.56E-03
64GO:0031048: chromatin silencing by small RNA1.56E-03
65GO:0010088: phloem development1.56E-03
66GO:0043572: plastid fission1.56E-03
67GO:0009768: photosynthesis, light harvesting in photosystem I1.62E-03
68GO:0061077: chaperone-mediated protein folding1.78E-03
69GO:0006730: one-carbon metabolic process1.95E-03
70GO:0006085: acetyl-CoA biosynthetic process2.09E-03
71GO:0006183: GTP biosynthetic process2.09E-03
72GO:0015994: chlorophyll metabolic process2.09E-03
73GO:0042991: transcription factor import into nucleus2.09E-03
74GO:0071483: cellular response to blue light2.09E-03
75GO:0051567: histone H3-K9 methylation2.09E-03
76GO:0006813: potassium ion transport2.46E-03
77GO:0032543: mitochondrial translation2.67E-03
78GO:0048359: mucilage metabolic process involved in seed coat development2.67E-03
79GO:0006564: L-serine biosynthetic process2.67E-03
80GO:0045038: protein import into chloroplast thylakoid membrane2.67E-03
81GO:0000413: protein peptidyl-prolyl isomerization2.70E-03
82GO:0006508: proteolysis2.84E-03
83GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.30E-03
84GO:0000470: maturation of LSU-rRNA3.30E-03
85GO:0006555: methionine metabolic process3.30E-03
86GO:0016554: cytidine to uridine editing3.30E-03
87GO:0010190: cytochrome b6f complex assembly3.30E-03
88GO:0032973: amino acid export3.30E-03
89GO:0016458: gene silencing3.30E-03
90GO:0009635: response to herbicide3.30E-03
91GO:0006014: D-ribose metabolic process3.30E-03
92GO:0009854: oxidative photosynthetic carbon pathway3.97E-03
93GO:0010067: procambium histogenesis3.97E-03
94GO:0009082: branched-chain amino acid biosynthetic process3.97E-03
95GO:0006458: 'de novo' protein folding3.97E-03
96GO:0042026: protein refolding3.97E-03
97GO:0009099: valine biosynthetic process3.97E-03
98GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.35E-03
99GO:0043090: amino acid import4.68E-03
100GO:0006614: SRP-dependent cotranslational protein targeting to membrane4.68E-03
101GO:0009645: response to low light intensity stimulus4.68E-03
102GO:0006400: tRNA modification4.68E-03
103GO:0010027: thylakoid membrane organization5.19E-03
104GO:0045292: mRNA cis splicing, via spliceosome5.44E-03
105GO:0017004: cytochrome complex assembly6.23E-03
106GO:0019430: removal of superoxide radicals6.23E-03
107GO:0010233: phloem transport6.23E-03
108GO:0009097: isoleucine biosynthetic process6.23E-03
109GO:0048481: plant ovule development6.77E-03
110GO:0015780: nucleotide-sugar transport7.07E-03
111GO:0090305: nucleic acid phosphodiester bond hydrolysis7.07E-03
112GO:0006098: pentose-phosphate shunt7.07E-03
113GO:0080144: amino acid homeostasis7.07E-03
114GO:0006779: porphyrin-containing compound biosynthetic process7.94E-03
115GO:0035999: tetrahydrofolate interconversion7.94E-03
116GO:0042761: very long-chain fatty acid biosynthetic process7.94E-03
117GO:0009098: leucine biosynthetic process7.94E-03
118GO:0010380: regulation of chlorophyll biosynthetic process7.94E-03
119GO:0009451: RNA modification7.96E-03
120GO:0009637: response to blue light8.59E-03
121GO:0016051: carbohydrate biosynthetic process8.59E-03
122GO:0030422: production of siRNA involved in RNA interference8.84E-03
123GO:0045036: protein targeting to chloroplast8.84E-03
124GO:0006535: cysteine biosynthetic process from serine8.84E-03
125GO:0006782: protoporphyrinogen IX biosynthetic process8.84E-03
126GO:0009773: photosynthetic electron transport in photosystem I9.79E-03
127GO:0009073: aromatic amino acid family biosynthetic process9.79E-03
128GO:0008285: negative regulation of cell proliferation9.79E-03
129GO:0006879: cellular iron ion homeostasis9.79E-03
130GO:0018119: peptidyl-cysteine S-nitrosylation9.79E-03
131GO:0009793: embryo development ending in seed dormancy1.06E-02
132GO:0045037: protein import into chloroplast stroma1.08E-02
133GO:0010114: response to red light1.11E-02
134GO:0010223: secondary shoot formation1.28E-02
135GO:0019253: reductive pentose-phosphate cycle1.28E-02
136GO:0042254: ribosome biogenesis1.38E-02
137GO:0019762: glucosinolate catabolic process1.50E-02
138GO:0010025: wax biosynthetic process1.50E-02
139GO:0051603: proteolysis involved in cellular protein catabolic process1.55E-02
140GO:0019344: cysteine biosynthetic process1.62E-02
141GO:0000027: ribosomal large subunit assembly1.62E-02
142GO:0007010: cytoskeleton organization1.62E-02
143GO:0042742: defense response to bacterium1.71E-02
144GO:0010073: meristem maintenance1.74E-02
145GO:0008299: isoprenoid biosynthetic process1.74E-02
146GO:0006096: glycolytic process1.78E-02
147GO:0006306: DNA methylation1.86E-02
148GO:0080092: regulation of pollen tube growth1.98E-02
149GO:0001944: vasculature development2.11E-02
150GO:0010227: floral organ abscission2.11E-02
151GO:0009411: response to UV2.11E-02
152GO:0006396: RNA processing2.20E-02
153GO:0010089: xylem development2.24E-02
154GO:0019722: calcium-mediated signaling2.24E-02
155GO:0016117: carotenoid biosynthetic process2.37E-02
156GO:0010051: xylem and phloem pattern formation2.50E-02
157GO:0010087: phloem or xylem histogenesis2.50E-02
158GO:0000271: polysaccharide biosynthetic process2.50E-02
159GO:0080022: primary root development2.50E-02
160GO:0042335: cuticle development2.50E-02
161GO:0006342: chromatin silencing2.64E-02
162GO:0045489: pectin biosynthetic process2.64E-02
163GO:0006662: glycerol ether metabolic process2.64E-02
164GO:0010305: leaf vascular tissue pattern formation2.64E-02
165GO:0007018: microtubule-based movement2.78E-02
166GO:0006814: sodium ion transport2.78E-02
167GO:0009409: response to cold2.86E-02
168GO:0006629: lipid metabolic process2.89E-02
169GO:0048825: cotyledon development2.92E-02
170GO:0019252: starch biosynthetic process2.92E-02
171GO:0080156: mitochondrial mRNA modification3.07E-02
172GO:0009790: embryo development3.13E-02
173GO:0016032: viral process3.21E-02
174GO:0006810: transport3.27E-02
175GO:0071805: potassium ion transmembrane transport3.67E-02
176GO:0007267: cell-cell signaling3.67E-02
177GO:0051607: defense response to virus3.83E-02
178GO:0001666: response to hypoxia3.98E-02
179GO:0009816: defense response to bacterium, incompatible interaction4.15E-02
180GO:0042128: nitrate assimilation4.31E-02
181GO:0009817: defense response to fungus, incompatible interaction4.81E-02
RankGO TermAdjusted P value
1GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
2GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
3GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
4GO:0005048: signal sequence binding0.00E+00
5GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
6GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
7GO:0008887: glycerate kinase activity0.00E+00
8GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
9GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
10GO:0004822: isoleucine-tRNA ligase activity0.00E+00
11GO:0003755: peptidyl-prolyl cis-trans isomerase activity8.55E-08
12GO:0051920: peroxiredoxin activity3.44E-06
13GO:0016209: antioxidant activity8.33E-06
14GO:0016149: translation release factor activity, codon specific3.40E-05
15GO:0001053: plastid sigma factor activity6.10E-05
16GO:0016987: sigma factor activity6.10E-05
17GO:0005528: FK506 binding1.15E-04
18GO:0019843: rRNA binding1.52E-04
19GO:0004723: calcium-dependent protein serine/threonine phosphatase activity1.90E-04
20GO:0004812: aminoacyl-tRNA ligase activity2.49E-04
21GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity3.07E-04
22GO:0046912: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer3.07E-04
23GO:0004425: indole-3-glycerol-phosphate synthase activity3.07E-04
24GO:0004824: lysine-tRNA ligase activity3.07E-04
25GO:0004807: triose-phosphate isomerase activity3.07E-04
26GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.07E-04
27GO:0004831: tyrosine-tRNA ligase activity3.07E-04
28GO:0003867: 4-aminobutyrate transaminase activity3.07E-04
29GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity3.07E-04
30GO:0003747: translation release factor activity4.63E-04
31GO:0004337: geranyltranstransferase activity4.63E-04
32GO:0008237: metallopeptidase activity5.63E-04
33GO:0008047: enzyme activator activity6.38E-04
34GO:0050017: L-3-cyanoalanine synthase activity6.71E-04
35GO:0047746: chlorophyllase activity6.71E-04
36GO:0004326: tetrahydrofolylpolyglutamate synthase activity6.71E-04
37GO:0004617: phosphoglycerate dehydrogenase activity6.71E-04
38GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity6.71E-04
39GO:0016630: protochlorophyllide reductase activity6.71E-04
40GO:0016168: chlorophyll binding6.99E-04
41GO:0004161: dimethylallyltranstransferase activity7.36E-04
42GO:0008266: poly(U) RNA binding1.07E-03
43GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.09E-03
44GO:0008864: formyltetrahydrofolate deformylase activity1.09E-03
45GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.09E-03
46GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.09E-03
47GO:0002161: aminoacyl-tRNA editing activity1.09E-03
48GO:0030267: glyoxylate reductase (NADP) activity1.09E-03
49GO:0031409: pigment binding1.33E-03
50GO:0043023: ribosomal large subunit binding1.56E-03
51GO:0052654: L-leucine transaminase activity1.56E-03
52GO:0008097: 5S rRNA binding1.56E-03
53GO:0008508: bile acid:sodium symporter activity1.56E-03
54GO:0052655: L-valine transaminase activity1.56E-03
55GO:0003878: ATP citrate synthase activity1.56E-03
56GO:0052656: L-isoleucine transaminase activity1.56E-03
57GO:0035197: siRNA binding1.56E-03
58GO:0004550: nucleoside diphosphate kinase activity1.56E-03
59GO:0008324: cation transmembrane transporter activity1.62E-03
60GO:0004176: ATP-dependent peptidase activity1.78E-03
61GO:0009055: electron carrier activity2.08E-03
62GO:0004659: prenyltransferase activity2.09E-03
63GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed2.09E-03
64GO:0004084: branched-chain-amino-acid transaminase activity2.09E-03
65GO:0043495: protein anchor2.09E-03
66GO:0004519: endonuclease activity2.13E-03
67GO:0003959: NADPH dehydrogenase activity2.67E-03
68GO:0016773: phosphotransferase activity, alcohol group as acceptor2.67E-03
69GO:0004601: peroxidase activity2.98E-03
70GO:0004791: thioredoxin-disulfide reductase activity3.13E-03
71GO:0004332: fructose-bisphosphate aldolase activity3.30E-03
72GO:0051082: unfolded protein binding3.85E-03
73GO:0004124: cysteine synthase activity3.97E-03
74GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.97E-03
75GO:0015631: tubulin binding3.97E-03
76GO:0004747: ribokinase activity3.97E-03
77GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.09E-03
78GO:0019899: enzyme binding4.68E-03
79GO:0008312: 7S RNA binding5.44E-03
80GO:0004033: aldo-keto reductase (NADP) activity5.44E-03
81GO:0008865: fructokinase activity5.44E-03
82GO:0003723: RNA binding5.79E-03
83GO:0046872: metal ion binding6.06E-03
84GO:0004222: metalloendopeptidase activity7.47E-03
85GO:0047617: acyl-CoA hydrolase activity7.94E-03
86GO:0005381: iron ion transmembrane transporter activity7.94E-03
87GO:0030234: enzyme regulator activity8.84E-03
88GO:0005524: ATP binding9.22E-03
89GO:0044183: protein binding involved in protein folding9.79E-03
90GO:0005089: Rho guanyl-nucleotide exchange factor activity9.79E-03
91GO:0042802: identical protein binding1.05E-02
92GO:0004521: endoribonuclease activity1.08E-02
93GO:0000049: tRNA binding1.08E-02
94GO:0031072: heat shock protein binding1.18E-02
95GO:0008081: phosphoric diester hydrolase activity1.18E-02
96GO:0051537: 2 iron, 2 sulfur cluster binding1.20E-02
97GO:0003729: mRNA binding1.20E-02
98GO:0043621: protein self-association1.20E-02
99GO:0016788: hydrolase activity, acting on ester bonds1.38E-02
100GO:0005509: calcium ion binding1.49E-02
101GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.50E-02
102GO:0015079: potassium ion transmembrane transporter activity1.74E-02
103GO:0019706: protein-cysteine S-palmitoyltransferase activity1.86E-02
104GO:0033612: receptor serine/threonine kinase binding1.86E-02
105GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.98E-02
106GO:0003735: structural constituent of ribosome2.09E-02
107GO:0022891: substrate-specific transmembrane transporter activity2.11E-02
108GO:0008514: organic anion transmembrane transporter activity2.24E-02
109GO:0042803: protein homodimerization activity2.36E-02
110GO:0047134: protein-disulfide reductase activity2.37E-02
111GO:0005102: receptor binding2.37E-02
112GO:0016740: transferase activity2.39E-02
113GO:0016301: kinase activity2.41E-02
114GO:0008080: N-acetyltransferase activity2.64E-02
115GO:0050662: coenzyme binding2.78E-02
116GO:0003924: GTPase activity2.89E-02
117GO:0004197: cysteine-type endopeptidase activity3.21E-02
118GO:0004518: nuclease activity3.21E-02
119GO:0016597: amino acid binding3.83E-02
120GO:0008017: microtubule binding3.86E-02
121GO:0009931: calcium-dependent protein serine/threonine kinase activity4.31E-02
122GO:0004683: calmodulin-dependent protein kinase activity4.48E-02
123GO:0004721: phosphoprotein phosphatase activity4.48E-02
124GO:0008236: serine-type peptidase activity4.64E-02
125GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding4.64E-02
126GO:0016887: ATPase activity4.95E-02
127GO:0015238: drug transmembrane transporter activity4.98E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast5.69E-44
2GO:0009941: chloroplast envelope2.19E-27
3GO:0009570: chloroplast stroma5.09E-26
4GO:0009535: chloroplast thylakoid membrane3.47E-16
5GO:0009543: chloroplast thylakoid lumen4.77E-15
6GO:0009579: thylakoid1.05E-13
7GO:0031977: thylakoid lumen1.17E-09
8GO:0009534: chloroplast thylakoid2.38E-05
9GO:0009536: plastid6.00E-05
10GO:0009654: photosystem II oxygen evolving complex1.33E-04
11GO:0009547: plastid ribosome3.07E-04
12GO:0009782: photosystem I antenna complex3.07E-04
13GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex3.07E-04
14GO:0019898: extrinsic component of membrane3.71E-04
15GO:0030529: intracellular ribonucleoprotein complex6.52E-04
16GO:0009706: chloroplast inner membrane6.70E-04
17GO:0080085: signal recognition particle, chloroplast targeting6.71E-04
18GO:0031969: chloroplast membrane9.30E-04
19GO:0030095: chloroplast photosystem II1.07E-03
20GO:0030076: light-harvesting complex1.19E-03
21GO:0005875: microtubule associated complex1.33E-03
22GO:0005719: nuclear euchromatin1.56E-03
23GO:0009346: citrate lyase complex1.56E-03
24GO:0042651: thylakoid membrane1.62E-03
25GO:0009532: plastid stroma1.78E-03
26GO:0046658: anchored component of plasma membrane2.35E-03
27GO:0000793: condensed chromosome3.30E-03
28GO:0009523: photosystem II3.35E-03
29GO:0000794: condensed nuclear chromosome4.68E-03
30GO:0009533: chloroplast stromal thylakoid4.68E-03
31GO:0010287: plastoglobule4.78E-03
32GO:0005840: ribosome6.07E-03
33GO:0005786: signal recognition particle, endoplasmic reticulum targeting6.23E-03
34GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)7.07E-03
35GO:0015030: Cajal body7.94E-03
36GO:0016324: apical plasma membrane8.84E-03
37GO:0000311: plastid large ribosomal subunit1.08E-02
38GO:0005764: lysosome1.28E-02
39GO:0030659: cytoplasmic vesicle membrane1.28E-02
40GO:0000312: plastid small ribosomal subunit1.28E-02
41GO:0016020: membrane1.40E-02
42GO:0005874: microtubule1.70E-02
43GO:0005871: kinesin complex2.37E-02
44GO:0005623: cell2.75E-02
45GO:0009522: photosystem I2.78E-02
46GO:0043231: intracellular membrane-bounded organelle3.26E-02
47GO:0005759: mitochondrial matrix3.36E-02
48GO:0031225: anchored component of membrane3.43E-02
49GO:0010319: stromule3.67E-02
50GO:0009295: nucleoid3.67E-02
51GO:0005615: extracellular space4.13E-02
Gene type



Gene DE type