co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G63690

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
2	GO:0070584: mitochondrion morphogenesis	0.00E+00
3	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
4	GO:0015970: guanosine tetraphosphate biosynthetic process	0.00E+00
5	GO:1902171: regulation of tocopherol cyclase activity	0.00E+00
6	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
7	GO:0046677: response to antibiotic	0.00E+00
8	GO:0015717: triose phosphate transport	0.00E+00
9	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
10	GO:0009768: photosynthesis, light harvesting in photosystem I	1.16E-15
11	GO:0015979: photosynthesis	1.52E-15
12	GO:0018298: protein-chromophore linkage	6.73E-11
13	GO:0010114: response to red light	4.41E-10
14	GO:0009769: photosynthesis, light harvesting in photosystem II	5.66E-07
15	GO:0009645: response to low light intensity stimulus	5.66E-07
16	GO:0015995: chlorophyll biosynthetic process	6.45E-06
17	GO:0010218: response to far red light	9.91E-06
18	GO:0009637: response to blue light	1.33E-05
19	GO:0009640: photomorphogenesis	2.23E-05
20	GO:0009644: response to high light intensity	2.62E-05
21	GO:0010196: nonphotochemical quenching	6.07E-05
22	GO:0009416: response to light stimulus	8.54E-05
23	GO:0006949: syncytium formation	1.75E-04
24	GO:0071497: cellular response to freezing	2.86E-04
25	GO:0050992: dimethylallyl diphosphate biosynthetic process	2.86E-04
26	GO:0055114: oxidation-reduction process	4.60E-04
27	GO:1902448: positive regulation of shade avoidance	4.72E-04
28	GO:0035436: triose phosphate transmembrane transport	4.72E-04
29	GO:0009269: response to desiccation	5.17E-04
30	GO:0080167: response to karrikin	5.82E-04
31	GO:0044211: CTP salvage	6.76E-04
32	GO:1901141: regulation of lignin biosynthetic process	8.97E-04
33	GO:0009765: photosynthesis, light harvesting	8.97E-04
34	GO:2000306: positive regulation of photomorphogenesis	8.97E-04
35	GO:0010600: regulation of auxin biosynthetic process	8.97E-04
36	GO:0015713: phosphoglycerate transport	8.97E-04
37	GO:0044206: UMP salvage	8.97E-04
38	GO:0015846: polyamine transport	8.97E-04
39	GO:0030104: water homeostasis	8.97E-04
40	GO:0042938: dipeptide transport	8.97E-04
41	GO:0016123: xanthophyll biosynthetic process	1.13E-03
42	GO:0043097: pyrimidine nucleoside salvage	1.13E-03
43	GO:0009828: plant-type cell wall loosening	1.22E-03
44	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.39E-03
45	GO:0045962: positive regulation of development, heterochronic	1.39E-03
46	GO:0006206: pyrimidine nucleobase metabolic process	1.39E-03
47	GO:0009643: photosynthetic acclimation	1.39E-03
48	GO:0009635: response to herbicide	1.39E-03
49	GO:0007623: circadian rhythm	1.50E-03
50	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.66E-03
51	GO:0045926: negative regulation of growth	1.66E-03
52	GO:0010189: vitamin E biosynthetic process	1.66E-03
53	GO:0010161: red light signaling pathway	1.95E-03
54	GO:0050829: defense response to Gram-negative bacterium	1.95E-03
55	GO:0010119: regulation of stomatal movement	2.17E-03
56	GO:0050821: protein stabilization	2.26E-03
57	GO:0010928: regulation of auxin mediated signaling pathway	2.26E-03
58	GO:0009819: drought recovery	2.26E-03
59	GO:0009642: response to light intensity	2.26E-03
60	GO:0009704: de-etiolation	2.26E-03
61	GO:0009826: unidimensional cell growth	2.48E-03
62	GO:0007186: G-protein coupled receptor signaling pathway	2.58E-03
63	GO:0009657: plastid organization	2.58E-03
64	GO:0048507: meristem development	2.91E-03
65	GO:0010206: photosystem II repair	2.91E-03
66	GO:0090333: regulation of stomatal closure	2.91E-03
67	GO:0009723: response to ethylene	3.13E-03
68	GO:0008356: asymmetric cell division	3.26E-03
69	GO:0009688: abscisic acid biosynthetic process	3.62E-03
70	GO:0009664: plant-type cell wall organization	3.83E-03
71	GO:0030148: sphingolipid biosynthetic process	4.00E-03
72	GO:0046856: phosphatidylinositol dephosphorylation	4.00E-03
73	GO:0009698: phenylpropanoid metabolic process	4.00E-03
74	GO:0043085: positive regulation of catalytic activity	4.00E-03
75	GO:0015706: nitrate transport	4.39E-03
76	GO:0018107: peptidyl-threonine phosphorylation	4.79E-03
77	GO:0009767: photosynthetic electron transport chain	4.79E-03
78	GO:0009887: animal organ morphogenesis	5.20E-03
79	GO:0010207: photosystem II assembly	5.20E-03
80	GO:0006629: lipid metabolic process	5.60E-03
81	GO:0090351: seedling development	5.63E-03
82	GO:0006289: nucleotide-excision repair	6.51E-03
83	GO:0006874: cellular calcium ion homeostasis	6.98E-03
84	GO:0003333: amino acid transmembrane transport	7.45E-03
85	GO:0010017: red or far-red light signaling pathway	7.93E-03
86	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	8.43E-03
87	GO:0071215: cellular response to abscisic acid stimulus	8.43E-03
88	GO:0010089: xylem development	8.93E-03
89	GO:0070417: cellular response to cold	9.45E-03
90	GO:0040008: regulation of growth	9.62E-03
91	GO:0000226: microtubule cytoskeleton organization	9.99E-03
92	GO:0010150: leaf senescence	1.01E-02
93	GO:0010182: sugar mediated signaling pathway	1.05E-02
94	GO:0009741: response to brassinosteroid	1.05E-02
95	GO:0010305: leaf vascular tissue pattern formation	1.05E-02
96	GO:0006662: glycerol ether metabolic process	1.05E-02
97	GO:0010228: vegetative to reproductive phase transition of meristem	1.06E-02
98	GO:0006814: sodium ion transport	1.11E-02
99	GO:0009409: response to cold	1.15E-02
100	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.22E-02
101	GO:0010193: response to ozone	1.22E-02
102	GO:0016032: viral process	1.28E-02
103	GO:0009651: response to salt stress	1.46E-02
104	GO:0016126: sterol biosynthetic process	1.58E-02
105	GO:0048573: photoperiodism, flowering	1.78E-02
106	GO:0016311: dephosphorylation	1.85E-02
107	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.01E-02
108	GO:0006811: ion transport	2.05E-02
109	GO:0044550: secondary metabolite biosynthetic process	2.11E-02
110	GO:0009910: negative regulation of flower development	2.12E-02
111	GO:0009631: cold acclimation	2.12E-02
112	GO:0006865: amino acid transport	2.19E-02
113	GO:0009737: response to abscisic acid	2.26E-02
114	GO:0045454: cell redox homeostasis	2.33E-02
115	GO:0034599: cellular response to oxidative stress	2.34E-02
116	GO:0051707: response to other organism	2.71E-02
117	GO:0009965: leaf morphogenesis	2.95E-02
118	GO:0048364: root development	2.99E-02
119	GO:0006812: cation transport	3.19E-02
120	GO:0006351: transcription, DNA-templated	3.35E-02
121	GO:0009585: red, far-red light phototransduction	3.35E-02
122	GO:0010224: response to UV-B	3.44E-02
123	GO:0006857: oligopeptide transport	3.52E-02
124	GO:0009909: regulation of flower development	3.60E-02
125	GO:0006417: regulation of translation	3.60E-02
126	GO:0043086: negative regulation of catalytic activity	3.78E-02
127	GO:0009734: auxin-activated signaling pathway	4.03E-02
128	GO:0009740: gibberellic acid mediated signaling pathway	4.13E-02
129	GO:0042545: cell wall modification	4.22E-02
130	GO:0009624: response to nematode	4.31E-02
131	GO:0006396: RNA processing	4.40E-02
132	GO:0018105: peptidyl-serine phosphorylation	4.40E-02
133	GO:0009742: brassinosteroid mediated signaling pathway	4.49E-02
134	GO:0009735: response to cytokinin	4.63E-02

Rank	GO Term	Adjusted P value
1	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
2	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
3	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
4	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
5	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
6	GO:0045550: geranylgeranyl reductase activity	0.00E+00
7	GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	0.00E+00
8	GO:0031409: pigment binding	8.56E-14
9	GO:0016168: chlorophyll binding	2.97E-11
10	GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor	1.23E-04
11	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	1.23E-04
12	GO:0052631: sphingolipid delta-8 desaturase activity	1.23E-04
13	GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	1.23E-04
14	GO:0080045: quercetin 3'-O-glucosyltransferase activity	2.86E-04
15	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	2.86E-04
16	GO:0016630: protochlorophyllide reductase activity	2.86E-04
17	GO:0008728: GTP diphosphokinase activity	2.86E-04
18	GO:0046872: metal ion binding	3.47E-04
19	GO:0016805: dipeptidase activity	4.72E-04
20	GO:0071917: triose-phosphate transmembrane transporter activity	4.72E-04
21	GO:0004180: carboxypeptidase activity	4.72E-04
22	GO:0010277: chlorophyllide a oxygenase [overall] activity	4.72E-04
23	GO:0015203: polyamine transmembrane transporter activity	6.76E-04
24	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	6.76E-04
25	GO:0015120: phosphoglycerate transmembrane transporter activity	8.97E-04
26	GO:0004845: uracil phosphoribosyltransferase activity	8.97E-04
27	GO:0042936: dipeptide transporter activity	8.97E-04
28	GO:0004506: squalene monooxygenase activity	8.97E-04
29	GO:0004930: G-protein coupled receptor activity	8.97E-04
30	GO:0070628: proteasome binding	8.97E-04
31	GO:0051538: 3 iron, 4 sulfur cluster binding	1.13E-03
32	GO:0080046: quercetin 4'-O-glucosyltransferase activity	1.39E-03
33	GO:0031593: polyubiquitin binding	1.39E-03
34	GO:0004462: lactoylglutathione lyase activity	1.39E-03
35	GO:0015297: antiporter activity	1.41E-03
36	GO:0004849: uridine kinase activity	1.66E-03
37	GO:0004602: glutathione peroxidase activity	1.66E-03
38	GO:0071949: FAD binding	2.91E-03
39	GO:0015174: basic amino acid transmembrane transporter activity	3.26E-03
40	GO:0051537: 2 iron, 2 sulfur cluster binding	3.30E-03
41	GO:0015293: symporter activity	3.43E-03
42	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	3.62E-03
43	GO:0008047: enzyme activator activity	3.62E-03
44	GO:0047372: acylglycerol lipase activity	4.00E-03
45	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	4.39E-03
46	GO:0004022: alcohol dehydrogenase (NAD) activity	4.79E-03
47	GO:0005315: inorganic phosphate transmembrane transporter activity	4.79E-03
48	GO:0005217: intracellular ligand-gated ion channel activity	5.63E-03
49	GO:0003712: transcription cofactor activity	5.63E-03
50	GO:0004970: ionotropic glutamate receptor activity	5.63E-03
51	GO:0015035: protein disulfide oxidoreductase activity	6.00E-03
52	GO:0043130: ubiquitin binding	6.51E-03
53	GO:0005216: ion channel activity	6.98E-03
54	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	7.49E-03
55	GO:0008289: lipid binding	8.51E-03
56	GO:0003727: single-stranded RNA binding	8.93E-03
57	GO:0008514: organic anion transmembrane transporter activity	8.93E-03
58	GO:0046910: pectinesterase inhibitor activity	9.39E-03
59	GO:0047134: protein-disulfide reductase activity	9.45E-03
60	GO:0004791: thioredoxin-disulfide reductase activity	1.11E-02
61	GO:0048038: quinone binding	1.22E-02
62	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.34E-02
63	GO:0003684: damaged DNA binding	1.40E-02
64	GO:0005515: protein binding	1.80E-02
65	GO:0016787: hydrolase activity	2.28E-02
66	GO:0003993: acid phosphatase activity	2.34E-02
67	GO:0042393: histone binding	2.48E-02
68	GO:0004185: serine-type carboxypeptidase activity	2.71E-02
69	GO:0005506: iron ion binding	2.77E-02
70	GO:0043621: protein self-association	2.87E-02
71	GO:0005198: structural molecule activity	2.95E-02
72	GO:0003700: transcription factor activity, sequence-specific DNA binding	3.14E-02
73	GO:0016298: lipase activity	3.44E-02
74	GO:0015171: amino acid transmembrane transporter activity	3.60E-02
75	GO:0045330: aspartyl esterase activity	3.60E-02
76	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.04E-02
77	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.04E-02
78	GO:0016874: ligase activity	4.13E-02
79	GO:0030599: pectinesterase activity	4.13E-02
80	GO:0004672: protein kinase activity	4.53E-02
81	GO:0003677: DNA binding	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0009783: photosystem II antenna complex	0.00E+00
2	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
3	GO:0009535: chloroplast thylakoid membrane	1.89E-21
4	GO:0009534: chloroplast thylakoid	6.98E-20
5	GO:0009941: chloroplast envelope	1.20E-15
6	GO:0009522: photosystem I	2.76E-14
7	GO:0010287: plastoglobule	1.33E-13
8	GO:0009579: thylakoid	9.91E-13
9	GO:0009507: chloroplast	3.09E-11
10	GO:0030076: light-harvesting complex	1.34E-09
11	GO:0009517: PSII associated light-harvesting complex II	4.32E-08
12	GO:0009538: photosystem I reaction center	8.75E-07
13	GO:0009523: photosystem II	1.70E-06
14	GO:0042651: thylakoid membrane	1.84E-05
15	GO:0016021: integral component of membrane	1.21E-04
16	GO:0016020: membrane	2.50E-04
17	GO:0031969: chloroplast membrane	5.82E-04
18	GO:0009533: chloroplast stromal thylakoid	1.95E-03
19	GO:0030095: chloroplast photosystem II	5.20E-03
20	GO:0009706: chloroplast inner membrane	5.83E-03
21	GO:0009543: chloroplast thylakoid lumen	7.30E-03
22	GO:0071944: cell periphery	1.34E-02
23	GO:0009570: chloroplast stroma	1.68E-02
24	GO:0009707: chloroplast outer membrane	1.91E-02
25	GO:0031977: thylakoid lumen	2.56E-02
26	GO:0031966: mitochondrial membrane	3.19E-02