co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G63310

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
2	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
3	GO:0042759: long-chain fatty acid biosynthetic process	5.48E-05
4	GO:0009658: chloroplast organization	6.50E-05
5	GO:0005986: sucrose biosynthetic process	8.50E-05
6	GO:0080165: callose deposition in phloem sieve plate	1.34E-04
7	GO:0030388: fructose 1,6-bisphosphate metabolic process	1.34E-04
8	GO:0010270: photosystem II oxygen evolving complex assembly	1.34E-04
9	GO:0006000: fructose metabolic process	2.28E-04
10	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	2.28E-04
11	GO:0010623: programmed cell death involved in cell development	2.28E-04
12	GO:0090506: axillary shoot meristem initiation	2.28E-04
13	GO:0006241: CTP biosynthetic process	3.33E-04
14	GO:0006165: nucleoside diphosphate phosphorylation	3.33E-04
15	GO:0006228: UTP biosynthetic process	3.33E-04
16	GO:0010088: phloem development	3.33E-04
17	GO:0006986: response to unfolded protein	3.33E-04
18	GO:2001141: regulation of RNA biosynthetic process	3.33E-04
19	GO:0051085: chaperone mediated protein folding requiring cofactor	3.33E-04
20	GO:0006183: GTP biosynthetic process	4.45E-04
21	GO:0045038: protein import into chloroplast thylakoid membrane	5.66E-04
22	GO:0015995: chlorophyll biosynthetic process	6.07E-04
23	GO:0016554: cytidine to uridine editing	6.92E-04
24	GO:0006828: manganese ion transport	6.92E-04
25	GO:0006014: D-ribose metabolic process	6.92E-04
26	GO:0006457: protein folding	7.07E-04
27	GO:0010067: procambium histogenesis	8.25E-04
28	GO:0042026: protein refolding	8.25E-04
29	GO:0006458: 'de novo' protein folding	8.25E-04
30	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	9.62E-04
31	GO:0015979: photosynthesis	1.03E-03
32	GO:0009819: drought recovery	1.11E-03
33	GO:0042255: ribosome assembly	1.11E-03
34	GO:0006353: DNA-templated transcription, termination	1.11E-03
35	GO:0009657: plastid organization	1.26E-03
36	GO:0032544: plastid translation	1.26E-03
37	GO:0006002: fructose 6-phosphate metabolic process	1.26E-03
38	GO:0071482: cellular response to light stimulus	1.26E-03
39	GO:0006779: porphyrin-containing compound biosynthetic process	1.58E-03
40	GO:1900865: chloroplast RNA modification	1.58E-03
41	GO:0006782: protoporphyrinogen IX biosynthetic process	1.75E-03
42	GO:0006816: calcium ion transport	1.93E-03
43	GO:0009773: photosynthetic electron transport in photosystem I	1.93E-03
44	GO:0006415: translational termination	1.93E-03
45	GO:0043085: positive regulation of catalytic activity	1.93E-03
46	GO:0006352: DNA-templated transcription, initiation	1.93E-03
47	GO:0009750: response to fructose	1.93E-03
48	GO:0005983: starch catabolic process	2.11E-03
49	GO:0006094: gluconeogenesis	2.30E-03
50	GO:0010020: chloroplast fission	2.49E-03
51	GO:0007034: vacuolar transport	2.49E-03
52	GO:0010223: secondary shoot formation	2.49E-03
53	GO:0005985: sucrose metabolic process	2.70E-03
54	GO:0010025: wax biosynthetic process	2.90E-03
55	GO:0006418: tRNA aminoacylation for protein translation	3.32E-03
56	GO:0061077: chaperone-mediated protein folding	3.54E-03
57	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	4.00E-03
58	GO:0009411: response to UV	4.00E-03
59	GO:0001944: vasculature development	4.00E-03
60	GO:0010089: xylem development	4.23E-03
61	GO:0016117: carotenoid biosynthetic process	4.47E-03
62	GO:0010087: phloem or xylem histogenesis	4.71E-03
63	GO:0006662: glycerol ether metabolic process	4.96E-03
64	GO:0048544: recognition of pollen	5.22E-03
65	GO:0019252: starch biosynthetic process	5.48E-03
66	GO:0032502: developmental process	6.00E-03
67	GO:0009828: plant-type cell wall loosening	6.55E-03
68	GO:0010027: thylakoid membrane organization	7.40E-03
69	GO:0045454: cell redox homeostasis	7.82E-03
70	GO:0016311: dephosphorylation	8.60E-03
71	GO:0048481: plant ovule development	8.91E-03
72	GO:0009407: toxin catabolic process	9.54E-03
73	GO:0016051: carbohydrate biosynthetic process	1.05E-02
74	GO:0008152: metabolic process	1.06E-02
75	GO:0034599: cellular response to oxidative stress	1.09E-02
76	GO:0042542: response to hydrogen peroxide	1.22E-02
77	GO:0009636: response to toxic substance	1.37E-02
78	GO:0009664: plant-type cell wall organization	1.48E-02
79	GO:0009585: red, far-red light phototransduction	1.55E-02
80	GO:0006813: potassium ion transport	1.55E-02
81	GO:0051603: proteolysis involved in cellular protein catabolic process	1.59E-02
82	GO:0006633: fatty acid biosynthetic process	2.75E-02
83	GO:0006413: translational initiation	2.80E-02
84	GO:0040008: regulation of growth	2.85E-02
85	GO:0009451: RNA modification	2.99E-02
86	GO:0008380: RNA splicing	3.34E-02
87	GO:0009826: unidimensional cell growth	3.91E-02
88	GO:0015031: protein transport	4.41E-02
89	GO:0048366: leaf development	4.51E-02
90	GO:0080167: response to karrikin	4.68E-02
91	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.79E-02
92	GO:0016192: vesicle-mediated transport	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
2	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
3	GO:0005048: signal sequence binding	0.00E+00
4	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
5	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	9.14E-05
6	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.34E-04
7	GO:0016630: protochlorophyllide reductase activity	1.34E-04
8	GO:0009055: electron carrier activity	2.14E-04
9	GO:0002161: aminoacyl-tRNA editing activity	2.28E-04
10	GO:0016149: translation release factor activity, codon specific	3.33E-04
11	GO:0004550: nucleoside diphosphate kinase activity	3.33E-04
12	GO:0016987: sigma factor activity	4.45E-04
13	GO:1990137: plant seed peroxidase activity	4.45E-04
14	GO:0001053: plastid sigma factor activity	4.45E-04
15	GO:0008194: UDP-glycosyltransferase activity	4.47E-04
16	GO:0016773: phosphotransferase activity, alcohol group as acceptor	5.66E-04
17	GO:0003959: NADPH dehydrogenase activity	5.66E-04
18	GO:0030414: peptidase inhibitor activity	5.66E-04
19	GO:0004747: ribokinase activity	8.25E-04
20	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	8.25E-04
21	GO:0016157: sucrose synthase activity	8.25E-04
22	GO:0051920: peroxiredoxin activity	8.25E-04
23	GO:0102360: daphnetin 3-O-glucosyltransferase activity	9.62E-04
24	GO:0102425: myricetin 3-O-glucosyltransferase activity	9.62E-04
25	GO:0008312: 7S RNA binding	1.11E-03
26	GO:0008865: fructokinase activity	1.11E-03
27	GO:0047893: flavonol 3-O-glucosyltransferase activity	1.11E-03
28	GO:0016209: antioxidant activity	1.11E-03
29	GO:0043621: protein self-association	1.15E-03
30	GO:0003747: translation release factor activity	1.41E-03
31	GO:0005384: manganese ion transmembrane transporter activity	1.58E-03
32	GO:0008047: enzyme activator activity	1.75E-03
33	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.83E-03
34	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.83E-03
35	GO:0044183: protein binding involved in protein folding	1.93E-03
36	GO:0051082: unfolded protein binding	2.00E-03
37	GO:0000049: tRNA binding	2.11E-03
38	GO:0015095: magnesium ion transmembrane transporter activity	2.30E-03
39	GO:0005528: FK506 binding	3.11E-03
40	GO:0008324: cation transmembrane transporter activity	3.32E-03
41	GO:0051087: chaperone binding	3.32E-03
42	GO:0033612: receptor serine/threonine kinase binding	3.54E-03
43	GO:0003727: single-stranded RNA binding	4.23E-03
44	GO:0005102: receptor binding	4.47E-03
45	GO:0047134: protein-disulfide reductase activity	4.47E-03
46	GO:0004812: aminoacyl-tRNA ligase activity	4.47E-03
47	GO:0004791: thioredoxin-disulfide reductase activity	5.22E-03
48	GO:0004601: peroxidase activity	5.28E-03
49	GO:0004197: cysteine-type endopeptidase activity	6.00E-03
50	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	6.27E-03
51	GO:0003924: GTPase activity	9.65E-03
52	GO:0004519: endonuclease activity	1.05E-02
53	GO:0003729: mRNA binding	1.18E-02
54	GO:0004364: glutathione transferase activity	1.22E-02
55	GO:0016301: kinase activity	1.22E-02
56	GO:0051537: 2 iron, 2 sulfur cluster binding	1.33E-02
57	GO:0005198: structural molecule activity	1.37E-02
58	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.55E-02
59	GO:0003690: double-stranded DNA binding	1.59E-02
60	GO:0008234: cysteine-type peptidase activity	1.67E-02
61	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.79E-02
62	GO:0015035: protein disulfide oxidoreductase activity	2.04E-02
63	GO:0016740: transferase activity	2.10E-02
64	GO:0046872: metal ion binding	2.12E-02
65	GO:0019843: rRNA binding	2.34E-02
66	GO:0005507: copper ion binding	2.45E-02
67	GO:0005525: GTP binding	2.83E-02
68	GO:0005509: calcium ion binding	3.21E-02
69	GO:0003743: translation initiation factor activity	3.29E-02
70	GO:0042802: identical protein binding	3.49E-02
71	GO:0016491: oxidoreductase activity	4.57E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	6.74E-14
2	GO:0009570: chloroplast stroma	2.00E-05
3	GO:0009941: chloroplast envelope	4.31E-05
4	GO:0080085: signal recognition particle, chloroplast targeting	1.34E-04
5	GO:0009543: chloroplast thylakoid lumen	2.53E-04
6	GO:0000793: condensed chromosome	6.92E-04
7	GO:0000815: ESCRT III complex	8.25E-04
8	GO:0000794: condensed nuclear chromosome	9.62E-04
9	GO:0009533: chloroplast stromal thylakoid	9.62E-04
10	GO:0009535: chloroplast thylakoid membrane	1.06E-03
11	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	1.26E-03
12	GO:0005811: lipid particle	1.26E-03
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.41E-03
14	GO:0043231: intracellular membrane-bounded organelle	1.60E-03
15	GO:0009508: plastid chromosome	2.30E-03
16	GO:0005764: lysosome	2.49E-03
17	GO:0042651: thylakoid membrane	3.32E-03
18	GO:0009532: plastid stroma	3.54E-03
19	GO:0009534: chloroplast thylakoid	3.70E-03
20	GO:0005615: extracellular space	3.83E-03
21	GO:0046658: anchored component of plasma membrane	4.52E-03
22	GO:0031969: chloroplast membrane	6.54E-03
23	GO:0009295: nucleoid	6.83E-03
24	GO:0000325: plant-type vacuole	9.86E-03
25	GO:0005618: cell wall	1.11E-02
26	GO:0010287: plastoglobule	2.25E-02
27	GO:0031225: anchored component of membrane	2.68E-02
28	GO:0005759: mitochondrial matrix	2.75E-02
29	GO:0009505: plant-type cell wall	4.35E-02
30	GO:0005874: microtubule	4.56E-02