GO Enrichment Analysis of Co-expressed Genes with
AT1G62780
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042407: cristae formation | 0.00E+00 |
| 2 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 3 | GO:0051881: regulation of mitochondrial membrane potential | 0.00E+00 |
| 4 | GO:0006437: tyrosyl-tRNA aminoacylation | 0.00E+00 |
| 5 | GO:0016048: detection of temperature stimulus | 0.00E+00 |
| 6 | GO:0042026: protein refolding | 1.29E-07 |
| 7 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 3.72E-07 |
| 8 | GO:0009658: chloroplast organization | 6.65E-07 |
| 9 | GO:0006546: glycine catabolic process | 6.47E-06 |
| 10 | GO:0019464: glycine decarboxylation via glycine cleavage system | 6.47E-06 |
| 11 | GO:0006458: 'de novo' protein folding | 2.36E-05 |
| 12 | GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process | 8.25E-05 |
| 13 | GO:0009735: response to cytokinin | 1.53E-04 |
| 14 | GO:0009767: photosynthetic electron transport chain | 1.54E-04 |
| 15 | GO:0019253: reductive pentose-phosphate cycle | 1.75E-04 |
| 16 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 1.97E-04 |
| 17 | GO:0006423: cysteinyl-tRNA aminoacylation | 1.97E-04 |
| 18 | GO:0009662: etioplast organization | 1.97E-04 |
| 19 | GO:1904143: positive regulation of carotenoid biosynthetic process | 1.97E-04 |
| 20 | GO:0080183: response to photooxidative stress | 1.97E-04 |
| 21 | GO:2000123: positive regulation of stomatal complex development | 1.97E-04 |
| 22 | GO:0043039: tRNA aminoacylation | 1.97E-04 |
| 23 | GO:0061077: chaperone-mediated protein folding | 3.03E-04 |
| 24 | GO:0007005: mitochondrion organization | 3.32E-04 |
| 25 | GO:0016117: carotenoid biosynthetic process | 4.26E-04 |
| 26 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 4.75E-04 |
| 27 | GO:0051085: chaperone mediated protein folding requiring cofactor | 4.75E-04 |
| 28 | GO:0010239: chloroplast mRNA processing | 4.75E-04 |
| 29 | GO:2000038: regulation of stomatal complex development | 6.32E-04 |
| 30 | GO:0006085: acetyl-CoA biosynthetic process | 6.32E-04 |
| 31 | GO:0010236: plastoquinone biosynthetic process | 8.00E-04 |
| 32 | GO:0016123: xanthophyll biosynthetic process | 8.00E-04 |
| 33 | GO:0010375: stomatal complex patterning | 8.00E-04 |
| 34 | GO:0006796: phosphate-containing compound metabolic process | 9.77E-04 |
| 35 | GO:0042793: transcription from plastid promoter | 9.77E-04 |
| 36 | GO:0010190: cytochrome b6f complex assembly | 9.77E-04 |
| 37 | GO:1901259: chloroplast rRNA processing | 1.16E-03 |
| 38 | GO:0006826: iron ion transport | 1.36E-03 |
| 39 | GO:0006880: intracellular sequestering of iron ion | 1.36E-03 |
| 40 | GO:0008610: lipid biosynthetic process | 1.57E-03 |
| 41 | GO:0000105: histidine biosynthetic process | 1.57E-03 |
| 42 | GO:0048564: photosystem I assembly | 1.57E-03 |
| 43 | GO:0048193: Golgi vesicle transport | 1.79E-03 |
| 44 | GO:0044030: regulation of DNA methylation | 1.79E-03 |
| 45 | GO:0010206: photosystem II repair | 2.02E-03 |
| 46 | GO:0043067: regulation of programmed cell death | 2.26E-03 |
| 47 | GO:0019684: photosynthesis, light reaction | 2.77E-03 |
| 48 | GO:0006879: cellular iron ion homeostasis | 2.77E-03 |
| 49 | GO:0018119: peptidyl-cysteine S-nitrosylation | 2.77E-03 |
| 50 | GO:0045037: protein import into chloroplast stroma | 3.03E-03 |
| 51 | GO:0042742: defense response to bacterium | 3.15E-03 |
| 52 | GO:0010020: chloroplast fission | 3.59E-03 |
| 53 | GO:0010207: photosystem II assembly | 3.59E-03 |
| 54 | GO:0010039: response to iron ion | 3.88E-03 |
| 55 | GO:0006418: tRNA aminoacylation for protein translation | 4.80E-03 |
| 56 | GO:0009409: response to cold | 4.99E-03 |
| 57 | GO:0006730: one-carbon metabolic process | 5.45E-03 |
| 58 | GO:0006810: transport | 5.65E-03 |
| 59 | GO:0006284: base-excision repair | 6.13E-03 |
| 60 | GO:0010197: polar nucleus fusion | 7.20E-03 |
| 61 | GO:0006342: chromatin silencing | 7.20E-03 |
| 62 | GO:0009741: response to brassinosteroid | 7.20E-03 |
| 63 | GO:0009646: response to absence of light | 7.57E-03 |
| 64 | GO:0055072: iron ion homeostasis | 7.95E-03 |
| 65 | GO:0000302: response to reactive oxygen species | 8.33E-03 |
| 66 | GO:0032502: developmental process | 8.73E-03 |
| 67 | GO:0010286: heat acclimation | 9.94E-03 |
| 68 | GO:0007267: cell-cell signaling | 9.94E-03 |
| 69 | GO:0048366: leaf development | 1.07E-02 |
| 70 | GO:0016126: sterol biosynthetic process | 1.08E-02 |
| 71 | GO:0009793: embryo development ending in seed dormancy | 1.12E-02 |
| 72 | GO:0009627: systemic acquired resistance | 1.17E-02 |
| 73 | GO:0016311: dephosphorylation | 1.26E-02 |
| 74 | GO:0015979: photosynthesis | 1.28E-02 |
| 75 | GO:0008219: cell death | 1.30E-02 |
| 76 | GO:0009853: photorespiration | 1.54E-02 |
| 77 | GO:0006839: mitochondrial transport | 1.69E-02 |
| 78 | GO:0008152: metabolic process | 1.83E-02 |
| 79 | GO:0009744: response to sucrose | 1.84E-02 |
| 80 | GO:0042538: hyperosmotic salinity response | 2.16E-02 |
| 81 | GO:0046686: response to cadmium ion | 2.48E-02 |
| 82 | GO:0006096: glycolytic process | 2.56E-02 |
| 83 | GO:0009908: flower development | 2.67E-02 |
| 84 | GO:0009416: response to light stimulus | 2.95E-02 |
| 85 | GO:0009742: brassinosteroid mediated signaling pathway | 3.05E-02 |
| 86 | GO:0006457: protein folding | 3.82E-02 |
| 87 | GO:0009790: embryo development | 3.83E-02 |
| 88 | GO:0006633: fatty acid biosynthetic process | 4.04E-02 |
| 89 | GO:0006413: translational initiation | 4.11E-02 |
| 90 | GO:0009451: RNA modification | 4.39E-02 |
| 91 | GO:0006470: protein dephosphorylation | 4.75E-02 |
| 92 | GO:0008380: RNA splicing | 4.89E-02 |
| 93 | GO:0010468: regulation of gene expression | 4.89E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004635: phosphoribosyl-AMP cyclohydrolase activity | 0.00E+00 |
| 2 | GO:0008962: phosphatidylglycerophosphatase activity | 0.00E+00 |
| 3 | GO:0050613: delta14-sterol reductase activity | 0.00E+00 |
| 4 | GO:0004636: phosphoribosyl-ATP diphosphatase activity | 0.00E+00 |
| 5 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
| 6 | GO:0044183: protein binding involved in protein folding | 1.70E-06 |
| 7 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 3.39E-06 |
| 8 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 2.36E-05 |
| 9 | GO:0004831: tyrosine-tRNA ligase activity | 8.25E-05 |
| 10 | GO:0010291: carotene beta-ring hydroxylase activity | 1.97E-04 |
| 11 | GO:0004618: phosphoglycerate kinase activity | 1.97E-04 |
| 12 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 1.97E-04 |
| 13 | GO:0004047: aminomethyltransferase activity | 1.97E-04 |
| 14 | GO:0004817: cysteine-tRNA ligase activity | 1.97E-04 |
| 15 | GO:0004751: ribose-5-phosphate isomerase activity | 3.29E-04 |
| 16 | GO:0051082: unfolded protein binding | 3.84E-04 |
| 17 | GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | 4.75E-04 |
| 18 | GO:0008199: ferric iron binding | 4.75E-04 |
| 19 | GO:0004322: ferroxidase activity | 4.75E-04 |
| 20 | GO:0003878: ATP citrate synthase activity | 4.75E-04 |
| 21 | GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity | 6.32E-04 |
| 22 | GO:0008725: DNA-3-methyladenine glycosylase activity | 8.00E-04 |
| 23 | GO:0008374: O-acyltransferase activity | 8.00E-04 |
| 24 | GO:0016462: pyrophosphatase activity | 9.77E-04 |
| 25 | GO:0080030: methyl indole-3-acetate esterase activity | 9.77E-04 |
| 26 | GO:0004427: inorganic diphosphatase activity | 1.36E-03 |
| 27 | GO:0005198: structural molecule activity | 2.01E-03 |
| 28 | GO:0022857: transmembrane transporter activity | 3.20E-03 |
| 29 | GO:0019843: rRNA binding | 4.25E-03 |
| 30 | GO:0005528: FK506 binding | 4.48E-03 |
| 31 | GO:0004812: aminoacyl-tRNA ligase activity | 6.48E-03 |
| 32 | GO:0019901: protein kinase binding | 7.95E-03 |
| 33 | GO:0008483: transaminase activity | 9.94E-03 |
| 34 | GO:0016597: amino acid binding | 1.04E-02 |
| 35 | GO:0008236: serine-type peptidase activity | 1.26E-02 |
| 36 | GO:0004722: protein serine/threonine phosphatase activity | 1.48E-02 |
| 37 | GO:0003993: acid phosphatase activity | 1.59E-02 |
| 38 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.05E-02 |
| 39 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 2.62E-02 |
| 40 | GO:0003735: structural constituent of ribosome | 3.37E-02 |
| 41 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 3.50E-02 |
| 42 | GO:0016740: transferase activity | 3.60E-02 |
| 43 | GO:0016787: hydrolase activity | 3.69E-02 |
| 44 | GO:0004252: serine-type endopeptidase activity | 3.70E-02 |
| 45 | GO:0008565: protein transporter activity | 3.90E-02 |
| 46 | GO:0005507: copper ion binding | 4.19E-02 |
| 47 | GO:0019825: oxygen binding | 4.19E-02 |
| 48 | GO:0005524: ATP binding | 4.38E-02 |
| 49 | GO:0003743: translation initiation factor activity | 4.82E-02 |
| 50 | GO:0005525: GTP binding | 4.83E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009344: nitrite reductase complex [NAD(P)H] | 0.00E+00 |
| 2 | GO:0009571: proplastid stroma | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 6.28E-24 |
| 4 | GO:0009570: chloroplast stroma | 2.73E-19 |
| 5 | GO:0009941: chloroplast envelope | 4.84E-12 |
| 6 | GO:0009579: thylakoid | 4.77E-10 |
| 7 | GO:0009535: chloroplast thylakoid membrane | 1.66E-09 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 6.19E-08 |
| 9 | GO:0005960: glycine cleavage complex | 3.39E-06 |
| 10 | GO:0009654: photosystem II oxygen evolving complex | 7.42E-06 |
| 11 | GO:0010319: stromule | 4.31E-05 |
| 12 | GO:0031977: thylakoid lumen | 1.42E-04 |
| 13 | GO:0030095: chloroplast photosystem II | 1.75E-04 |
| 14 | GO:0009534: chloroplast thylakoid | 2.65E-04 |
| 15 | GO:0009346: citrate lyase complex | 4.75E-04 |
| 16 | GO:0019898: extrinsic component of membrane | 5.70E-04 |
| 17 | GO:0009539: photosystem II reaction center | 1.79E-03 |
| 18 | GO:0042644: chloroplast nucleoid | 2.02E-03 |
| 19 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.02E-03 |
| 20 | GO:0000311: plastid large ribosomal subunit | 3.03E-03 |
| 21 | GO:0030176: integral component of endoplasmic reticulum membrane | 3.88E-03 |
| 22 | GO:0042651: thylakoid membrane | 4.80E-03 |
| 23 | GO:0009532: plastid stroma | 5.12E-03 |
| 24 | GO:0022626: cytosolic ribosome | 5.48E-03 |
| 25 | GO:0000790: nuclear chromatin | 6.48E-03 |
| 26 | GO:0009295: nucleoid | 9.94E-03 |
| 27 | GO:0005778: peroxisomal membrane | 9.94E-03 |
| 28 | GO:0015934: large ribosomal subunit | 1.44E-02 |
| 29 | GO:0000786: nucleosome | 1.49E-02 |
| 30 | GO:0009536: plastid | 1.84E-02 |
| 31 | GO:0048046: apoplast | 2.21E-02 |
| 32 | GO:0009706: chloroplast inner membrane | 2.93E-02 |
| 33 | GO:0005623: cell | 3.50E-02 |