co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G61250

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010360: negative regulation of anion channel activity	0.00E+00
2	GO:1900151: regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	0.00E+00
3	GO:0006593: ornithine catabolic process	0.00E+00
4	GO:1901017: negative regulation of potassium ion transmembrane transporter activity	0.00E+00
5	GO:0006511: ubiquitin-dependent protein catabolic process	4.33E-06
6	GO:0019544: arginine catabolic process to glutamate	8.25E-05
7	GO:0071806: protein transmembrane transport	8.25E-05
8	GO:0080120: CAAX-box protein maturation	8.25E-05
9	GO:0071586: CAAX-box protein processing	8.25E-05
10	GO:0080173: male-female gamete recognition during double fertilization	8.25E-05
11	GO:1902361: mitochondrial pyruvate transmembrane transport	8.25E-05
12	GO:0060211: regulation of nuclear-transcribed mRNA poly(A) tail shortening	8.25E-05
13	GO:0051775: response to redox state	8.25E-05
14	GO:0006850: mitochondrial pyruvate transport	1.97E-04
15	GO:0009156: ribonucleoside monophosphate biosynthetic process	1.97E-04
16	GO:0015914: phospholipid transport	1.97E-04
17	GO:0019521: D-gluconate metabolic process	1.97E-04
18	GO:0015031: protein transport	2.13E-04
19	GO:0051603: proteolysis involved in cellular protein catabolic process	2.52E-04
20	GO:0016192: vesicle-mediated transport	2.67E-04
21	GO:0051646: mitochondrion localization	3.29E-04
22	GO:0009651: response to salt stress	4.03E-04
23	GO:0009165: nucleotide biosynthetic process	6.32E-04
24	GO:0046345: abscisic acid catabolic process	6.32E-04
25	GO:0006796: phosphate-containing compound metabolic process	9.77E-04
26	GO:0002238: response to molecule of fungal origin	9.77E-04
27	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	9.77E-04
28	GO:0006561: proline biosynthetic process	9.77E-04
29	GO:0035435: phosphate ion transmembrane transport	9.77E-04
30	GO:0009612: response to mechanical stimulus	1.16E-03
31	GO:0000911: cytokinesis by cell plate formation	1.16E-03
32	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	1.16E-03
33	GO:0006508: proteolysis	1.29E-03
34	GO:0050790: regulation of catalytic activity	1.36E-03
35	GO:0009395: phospholipid catabolic process	1.36E-03
36	GO:0046686: response to cadmium ion	1.46E-03
37	GO:0006099: tricarboxylic acid cycle	1.46E-03
38	GO:0043068: positive regulation of programmed cell death	1.57E-03
39	GO:2000070: regulation of response to water deprivation	1.57E-03
40	GO:0045010: actin nucleation	1.57E-03
41	GO:0006102: isocitrate metabolic process	1.57E-03
42	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	1.57E-03
43	GO:0009932: cell tip growth	1.79E-03
44	GO:0051865: protein autoubiquitination	2.02E-03
45	GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	2.02E-03
46	GO:0046685: response to arsenic-containing substance	2.02E-03
47	GO:0006098: pentose-phosphate shunt	2.02E-03
48	GO:0006886: intracellular protein transport	2.24E-03
49	GO:0030042: actin filament depolymerization	2.26E-03
50	GO:0018119: peptidyl-cysteine S-nitrosylation	2.77E-03
51	GO:0012501: programmed cell death	3.03E-03
52	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	3.31E-03
53	GO:0006626: protein targeting to mitochondrion	3.31E-03
54	GO:0006094: gluconeogenesis	3.31E-03
55	GO:0006807: nitrogen compound metabolic process	3.31E-03
56	GO:0006446: regulation of translational initiation	3.59E-03
57	GO:0080147: root hair cell development	4.48E-03
58	GO:0009116: nucleoside metabolic process	4.48E-03
59	GO:0030150: protein import into mitochondrial matrix	4.48E-03
60	GO:0030433: ubiquitin-dependent ERAD pathway	5.45E-03
61	GO:0000413: protein peptidyl-prolyl isomerization	6.83E-03
62	GO:0010197: polar nucleus fusion	7.20E-03
63	GO:0010154: fruit development	7.20E-03
64	GO:0061025: membrane fusion	7.57E-03
65	GO:0006623: protein targeting to vacuole	7.95E-03
66	GO:0055114: oxidation-reduction process	8.10E-03
67	GO:0000302: response to reactive oxygen species	8.33E-03
68	GO:0016032: viral process	8.73E-03
69	GO:0030163: protein catabolic process	9.12E-03
70	GO:0006904: vesicle docking involved in exocytosis	9.94E-03
71	GO:0016579: protein deubiquitination	1.04E-02
72	GO:0009816: defense response to bacterium, incompatible interaction	1.12E-02
73	GO:0010200: response to chitin	1.16E-02
74	GO:0044550: secondary metabolite biosynthetic process	1.22E-02
75	GO:0045454: cell redox homeostasis	1.35E-02
76	GO:0006499: N-terminal protein myristoylation	1.39E-02
77	GO:0006979: response to oxidative stress	1.43E-02
78	GO:0010119: regulation of stomatal movement	1.44E-02
79	GO:0010043: response to zinc ion	1.44E-02
80	GO:0009408: response to heat	1.66E-02
81	GO:0006887: exocytosis	1.74E-02
82	GO:0042542: response to hydrogen peroxide	1.79E-02
83	GO:0008152: metabolic process	1.83E-02
84	GO:0009744: response to sucrose	1.84E-02
85	GO:0051707: response to other organism	1.84E-02
86	GO:0000209: protein polyubiquitination	1.89E-02
87	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	2.11E-02
88	GO:0009846: pollen germination	2.16E-02
89	GO:0042538: hyperosmotic salinity response	2.16E-02
90	GO:0006096: glycolytic process	2.56E-02
91	GO:0048316: seed development	2.62E-02
92	GO:0009626: plant-type hypersensitive response	2.68E-02
93	GO:0009058: biosynthetic process	3.56E-02
94	GO:0006457: protein folding	3.82E-02
95	GO:0016036: cellular response to phosphate starvation	4.11E-02
96	GO:0006413: translational initiation	4.11E-02
97	GO:0016310: phosphorylation	4.35E-02
98	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	4.67E-02
99	GO:0009617: response to bacterium	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0004587: ornithine-oxo-acid transaminase activity	0.00E+00
2	GO:0052642: lysophosphatidic acid phosphatase activity	0.00E+00
3	GO:0005522: profilin binding	0.00E+00
4	GO:0004298: threonine-type endopeptidase activity	1.13E-07
5	GO:0008233: peptidase activity	2.18E-05
6	GO:0008320: protein transmembrane transporter activity	3.21E-05
7	GO:0016920: pyroglutamyl-peptidase activity	8.25E-05
8	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	8.25E-05
9	GO:0015036: disulfide oxidoreductase activity	1.97E-04
10	GO:0004450: isocitrate dehydrogenase (NADP+) activity	1.97E-04
11	GO:0008430: selenium binding	3.29E-04
12	GO:0050833: pyruvate transmembrane transporter activity	3.29E-04
13	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	4.75E-04
14	GO:0004749: ribose phosphate diphosphokinase activity	4.75E-04
15	GO:0005496: steroid binding	8.00E-04
16	GO:0010294: abscisic acid glucosyltransferase activity	8.00E-04
17	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	9.77E-04
18	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	9.77E-04
19	GO:0036402: proteasome-activating ATPase activity	9.77E-04
20	GO:0004526: ribonuclease P activity	9.77E-04
21	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.16E-03
22	GO:0004656: procollagen-proline 4-dioxygenase activity	1.16E-03
23	GO:0008121: ubiquinol-cytochrome-c reductase activity	1.36E-03
24	GO:0071949: FAD binding	2.02E-03
25	GO:0051287: NAD binding	2.16E-03
26	GO:0004129: cytochrome-c oxidase activity	2.77E-03
27	GO:0008794: arsenate reductase (glutaredoxin) activity	2.77E-03
28	GO:0003779: actin binding	3.30E-03
29	GO:0005315: inorganic phosphate transmembrane transporter activity	3.31E-03
30	GO:0015266: protein channel activity	3.31E-03
31	GO:0031624: ubiquitin conjugating enzyme binding	3.59E-03
32	GO:0004175: endopeptidase activity	3.59E-03
33	GO:0017025: TBP-class protein binding	3.88E-03
34	GO:0004190: aspartic-type endopeptidase activity	3.88E-03
35	GO:0003954: NADH dehydrogenase activity	4.48E-03
36	GO:0030170: pyridoxal phosphate binding	4.71E-03
37	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	5.12E-03
38	GO:0008194: UDP-glycosyltransferase activity	6.54E-03
39	GO:0008137: NADH dehydrogenase (ubiquinone) activity	8.33E-03
40	GO:0004843: thiol-dependent ubiquitin-specific protease activity	8.33E-03
41	GO:0004197: cysteine-type endopeptidase activity	8.73E-03
42	GO:0000287: magnesium ion binding	8.88E-03
43	GO:0051015: actin filament binding	9.12E-03
44	GO:0061630: ubiquitin protein ligase activity	1.18E-02
45	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.30E-02
46	GO:0004222: metalloendopeptidase activity	1.39E-02
47	GO:0003746: translation elongation factor activity	1.54E-02
48	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.54E-02
49	GO:0003993: acid phosphatase activity	1.59E-02
50	GO:0050661: NADP binding	1.69E-02
51	GO:0005484: SNAP receptor activity	1.84E-02
52	GO:0051537: 2 iron, 2 sulfur cluster binding	1.95E-02
53	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.05E-02
54	GO:0008234: cysteine-type peptidase activity	2.45E-02
55	GO:0016887: ATPase activity	2.58E-02
56	GO:0080043: quercetin 3-O-glucosyltransferase activity	2.74E-02
57	GO:0080044: quercetin 7-O-glucosyltransferase activity	2.74E-02
58	GO:0015035: protein disulfide oxidoreductase activity	2.99E-02
59	GO:0016740: transferase activity	3.60E-02
60	GO:0004252: serine-type endopeptidase activity	3.70E-02
61	GO:0005507: copper ion binding	4.19E-02
62	GO:0005516: calmodulin binding	4.43E-02
63	GO:0003743: translation initiation factor activity	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0019822: P4 peroxisome	0.00E+00
2	GO:0000502: proteasome complex	9.65E-09
3	GO:0005839: proteasome core complex	1.13E-07
4	GO:0030134: ER to Golgi transport vesicle	3.72E-07
5	GO:0031305: integral component of mitochondrial inner membrane	4.22E-05
6	GO:0019773: proteasome core complex, alpha-subunit complex	5.37E-05
7	GO:0032783: ELL-EAF complex	8.25E-05
8	GO:0005911: cell-cell junction	8.25E-05
9	GO:0005901: caveola	1.97E-04
10	GO:0031304: intrinsic component of mitochondrial inner membrane	1.97E-04
11	GO:0031314: extrinsic component of mitochondrial inner membrane	1.97E-04
12	GO:0005829: cytosol	2.25E-04
13	GO:0005782: peroxisomal matrix	3.29E-04
14	GO:0070062: extracellular exosome	4.75E-04
15	GO:0005783: endoplasmic reticulum	6.14E-04
16	GO:0030660: Golgi-associated vesicle membrane	6.32E-04
17	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	6.32E-04
18	GO:0032580: Golgi cisterna membrane	7.32E-04
19	GO:0005746: mitochondrial respiratory chain	8.00E-04
20	GO:0005773: vacuole	1.11E-03
21	GO:0009840: chloroplastic endopeptidase Clp complex	1.16E-03
22	GO:0031597: cytosolic proteasome complex	1.16E-03
23	GO:0005801: cis-Golgi network	1.16E-03
24	GO:0005777: peroxisome	1.33E-03
25	GO:0031595: nuclear proteasome complex	1.36E-03
26	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	1.57E-03
27	GO:0045273: respiratory chain complex II	1.57E-03
28	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	1.57E-03
29	GO:0005774: vacuolar membrane	1.63E-03
30	GO:0005886: plasma membrane	2.12E-03
31	GO:0008540: proteasome regulatory particle, base subcomplex	2.26E-03
32	GO:0005740: mitochondrial envelope	2.51E-03
33	GO:0017119: Golgi transport complex	2.51E-03
34	GO:0016020: membrane	2.58E-03
35	GO:0005765: lysosomal membrane	2.77E-03
36	GO:0008541: proteasome regulatory particle, lid subcomplex	2.77E-03
37	GO:0005750: mitochondrial respiratory chain complex III	3.59E-03
38	GO:0005764: lysosome	3.59E-03
39	GO:0030176: integral component of endoplasmic reticulum membrane	3.88E-03
40	GO:0005758: mitochondrial intermembrane space	4.48E-03
41	GO:0009532: plastid stroma	5.12E-03
42	GO:0022626: cytosolic ribosome	5.48E-03
43	GO:0015629: actin cytoskeleton	5.78E-03
44	GO:0005789: endoplasmic reticulum membrane	6.00E-03
45	GO:0005744: mitochondrial inner membrane presequence translocase complex	6.13E-03
46	GO:0009504: cell plate	7.95E-03
47	GO:0000145: exocyst	8.73E-03
48	GO:0005737: cytoplasm	1.20E-02
49	GO:0000151: ubiquitin ligase complex	1.30E-02
50	GO:0005743: mitochondrial inner membrane	1.55E-02
51	GO:0005819: spindle	1.64E-02
52	GO:0031902: late endosome membrane	1.74E-02
53	GO:0005747: mitochondrial respiratory chain complex I	2.62E-02
54	GO:0005623: cell	3.50E-02
55	GO:0009524: phragmoplast	3.56E-02
56	GO:0005794: Golgi apparatus	3.88E-02
57	GO:0005759: mitochondrial matrix	4.04E-02
58	GO:0005615: extracellular space	4.67E-02
59	GO:0005802: trans-Golgi network	4.71E-02