co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G60800

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000505: regulation of energy homeostasis	0.00E+00
2	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
3	GO:0090627: plant epidermal cell differentiation	0.00E+00
4	GO:0010207: photosystem II assembly	1.70E-06
5	GO:0015979: photosynthesis	3.50E-06
6	GO:0015995: chlorophyll biosynthetic process	4.00E-06
7	GO:0009772: photosynthetic electron transport in photosystem II	4.86E-06
8	GO:0051513: regulation of monopolar cell growth	3.12E-05
9	GO:0009773: photosynthetic electron transport in photosystem I	3.32E-05
10	GO:0042549: photosystem II stabilization	1.29E-04
11	GO:0009913: epidermal cell differentiation	1.29E-04
12	GO:1901259: chloroplast rRNA processing	1.76E-04
13	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.78E-04
14	GO:0010444: guard mother cell differentiation	2.30E-04
15	GO:0006605: protein targeting	2.91E-04
16	GO:0031338: regulation of vesicle fusion	2.92E-04
17	GO:0034337: RNA folding	2.92E-04
18	GO:0009664: plant-type cell wall organization	3.08E-04
19	GO:0010206: photosystem II repair	4.30E-04
20	GO:0009828: plant-type cell wall loosening	4.75E-04
21	GO:0010205: photoinhibition	5.10E-04
22	GO:0010027: thylakoid membrane organization	5.95E-04
23	GO:0001736: establishment of planar polarity	6.40E-04
24	GO:0010275: NAD(P)H dehydrogenase complex assembly	6.40E-04
25	GO:0006898: receptor-mediated endocytosis	6.40E-04
26	GO:0035304: regulation of protein dephosphorylation	6.40E-04
27	GO:0010115: regulation of abscisic acid biosynthetic process	6.40E-04
28	GO:0010541: acropetal auxin transport	6.40E-04
29	GO:0016024: CDP-diacylglycerol biosynthetic process	7.84E-04
30	GO:0009735: response to cytokinin	9.96E-04
31	GO:0045493: xylan catabolic process	1.04E-03
32	GO:0090630: activation of GTPase activity	1.04E-03
33	GO:0010160: formation of animal organ boundary	1.04E-03
34	GO:0090391: granum assembly	1.04E-03
35	GO:0016045: detection of bacterium	1.04E-03
36	GO:0010359: regulation of anion channel activity	1.04E-03
37	GO:0045490: pectin catabolic process	1.37E-03
38	GO:0010239: chloroplast mRNA processing	1.48E-03
39	GO:0080170: hydrogen peroxide transmembrane transport	1.48E-03
40	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.48E-03
41	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.48E-03
42	GO:1901332: negative regulation of lateral root development	1.48E-03
43	GO:0009926: auxin polar transport	1.53E-03
44	GO:0071369: cellular response to ethylene stimulus	1.98E-03
45	GO:0045727: positive regulation of translation	1.99E-03
46	GO:0030104: water homeostasis	1.99E-03
47	GO:0006364: rRNA processing	2.24E-03
48	GO:0080022: primary root development	2.51E-03
49	GO:0034220: ion transmembrane transport	2.51E-03
50	GO:0042335: cuticle development	2.51E-03
51	GO:0045038: protein import into chloroplast thylakoid membrane	2.54E-03
52	GO:0048497: maintenance of floral organ identity	2.54E-03
53	GO:0010438: cellular response to sulfur starvation	2.54E-03
54	GO:0009697: salicylic acid biosynthetic process	2.54E-03
55	GO:0009958: positive gravitropism	2.71E-03
56	GO:0010305: leaf vascular tissue pattern formation	2.71E-03
57	GO:0042752: regulation of circadian rhythm	2.91E-03
58	GO:0009734: auxin-activated signaling pathway	2.95E-03
59	GO:0048825: cotyledon development	3.12E-03
60	GO:0009759: indole glucosinolate biosynthetic process	3.14E-03
61	GO:0006561: proline biosynthetic process	3.14E-03
62	GO:0010304: PSII associated light-harvesting complex II catabolic process	3.14E-03
63	GO:0006751: glutathione catabolic process	3.14E-03
64	GO:0006655: phosphatidylglycerol biosynthetic process	3.14E-03
65	GO:0060918: auxin transport	3.14E-03
66	GO:0009624: response to nematode	3.51E-03
67	GO:0042372: phylloquinone biosynthetic process	3.77E-03
68	GO:0017148: negative regulation of translation	3.77E-03
69	GO:0009942: longitudinal axis specification	3.77E-03
70	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.89E-03
71	GO:0009416: response to light stimulus	4.43E-03
72	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	4.45E-03
73	GO:0010196: nonphotochemical quenching	4.45E-03
74	GO:1900057: positive regulation of leaf senescence	4.45E-03
75	GO:0010492: maintenance of shoot apical meristem identity	5.17E-03
76	GO:0006353: DNA-templated transcription, termination	5.17E-03
77	GO:0010411: xyloglucan metabolic process	5.68E-03
78	GO:0032544: plastid translation	5.92E-03
79	GO:0007389: pattern specification process	5.92E-03
80	GO:0015996: chlorophyll catabolic process	5.92E-03
81	GO:0010311: lateral root formation	6.61E-03
82	GO:0009245: lipid A biosynthetic process	6.71E-03
83	GO:0048507: meristem development	6.71E-03
84	GO:0007623: circadian rhythm	7.04E-03
85	GO:0009638: phototropism	7.54E-03
86	GO:0006865: amino acid transport	7.62E-03
87	GO:0009688: abscisic acid biosynthetic process	8.40E-03
88	GO:0048829: root cap development	8.40E-03
89	GO:0006949: syncytium formation	8.40E-03
90	GO:0009750: response to fructose	9.30E-03
91	GO:0048765: root hair cell differentiation	9.30E-03
92	GO:0046856: phosphatidylinositol dephosphorylation	9.30E-03
93	GO:0052544: defense response by callose deposition in cell wall	9.30E-03
94	GO:0019684: photosynthesis, light reaction	9.30E-03
95	GO:1903507: negative regulation of nucleic acid-templated transcription	9.30E-03
96	GO:0008361: regulation of cell size	1.02E-02
97	GO:0002213: defense response to insect	1.02E-02
98	GO:0010114: response to red light	1.03E-02
99	GO:0050826: response to freezing	1.12E-02
100	GO:0009718: anthocyanin-containing compound biosynthetic process	1.12E-02
101	GO:0006094: gluconeogenesis	1.12E-02
102	GO:0010588: cotyledon vascular tissue pattern formation	1.12E-02
103	GO:0009785: blue light signaling pathway	1.12E-02
104	GO:0010628: positive regulation of gene expression	1.12E-02
105	GO:0009826: unidimensional cell growth	1.17E-02
106	GO:0010540: basipetal auxin transport	1.22E-02
107	GO:0010143: cutin biosynthetic process	1.22E-02
108	GO:0010030: positive regulation of seed germination	1.32E-02
109	GO:0071732: cellular response to nitric oxide	1.32E-02
110	GO:0006833: water transport	1.43E-02
111	GO:0000162: tryptophan biosynthetic process	1.43E-02
112	GO:0006636: unsaturated fatty acid biosynthetic process	1.43E-02
113	GO:0051017: actin filament bundle assembly	1.54E-02
114	GO:2000377: regulation of reactive oxygen species metabolic process	1.54E-02
115	GO:0007017: microtubule-based process	1.65E-02
116	GO:0003333: amino acid transmembrane transport	1.76E-02
117	GO:0016998: cell wall macromolecule catabolic process	1.76E-02
118	GO:0048511: rhythmic process	1.76E-02
119	GO:0009733: response to auxin	1.84E-02
120	GO:0010017: red or far-red light signaling pathway	1.88E-02
121	GO:0035428: hexose transmembrane transport	1.88E-02
122	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.88E-02
123	GO:0009306: protein secretion	2.12E-02
124	GO:0048443: stamen development	2.12E-02
125	GO:0042127: regulation of cell proliferation	2.12E-02
126	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.25E-02
127	GO:0000413: protein peptidyl-prolyl isomerization	2.37E-02
128	GO:0010087: phloem or xylem histogenesis	2.37E-02
129	GO:0042631: cellular response to water deprivation	2.37E-02
130	GO:0010182: sugar mediated signaling pathway	2.50E-02
131	GO:0046323: glucose import	2.50E-02
132	GO:0071472: cellular response to salt stress	2.50E-02
133	GO:0016042: lipid catabolic process	2.54E-02
134	GO:0015986: ATP synthesis coupled proton transport	2.64E-02
135	GO:0009845: seed germination	2.69E-02
136	GO:0000302: response to reactive oxygen species	2.91E-02
137	GO:0010583: response to cyclopentenone	3.05E-02
138	GO:0006633: fatty acid biosynthetic process	3.13E-02
139	GO:0030163: protein catabolic process	3.19E-02
140	GO:0071281: cellular response to iron ion	3.19E-02
141	GO:0010252: auxin homeostasis	3.34E-02
142	GO:0009639: response to red or far red light	3.34E-02
143	GO:0071805: potassium ion transmembrane transport	3.48E-02
144	GO:0051607: defense response to virus	3.63E-02
145	GO:0009627: systemic acquired resistance	4.09E-02
146	GO:0042742: defense response to bacterium	4.49E-02
147	GO:0000160: phosphorelay signal transduction system	4.73E-02
148	GO:0010218: response to far red light	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
3	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
4	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
5	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
6	GO:0005528: FK506 binding	7.21E-08
7	GO:0016851: magnesium chelatase activity	1.36E-07
8	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.53E-06
9	GO:0030570: pectate lyase activity	1.78E-04
10	GO:0010242: oxygen evolving activity	2.92E-04
11	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	2.92E-04
12	GO:0045485: omega-6 fatty acid desaturase activity	2.92E-04
13	GO:0008909: isochorismate synthase activity	2.92E-04
14	GO:0034256: chlorophyll(ide) b reductase activity	2.92E-04
15	GO:0003839: gamma-glutamylcyclotransferase activity	6.40E-04
16	GO:0005515: protein binding	8.37E-04
17	GO:0019843: rRNA binding	8.44E-04
18	GO:0010329: auxin efflux transmembrane transporter activity	8.88E-04
19	GO:0016829: lyase activity	9.49E-04
20	GO:0008266: poly(U) RNA binding	9.97E-04
21	GO:0090729: toxin activity	1.04E-03
22	GO:0043023: ribosomal large subunit binding	1.48E-03
23	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.99E-03
24	GO:0046556: alpha-L-arabinofuranosidase activity	1.99E-03
25	GO:0010011: auxin binding	1.99E-03
26	GO:0010328: auxin influx transmembrane transporter activity	1.99E-03
27	GO:0009044: xylan 1,4-beta-xylosidase activity	1.99E-03
28	GO:0017137: Rab GTPase binding	2.54E-03
29	GO:0016788: hydrolase activity, acting on ester bonds	2.74E-03
30	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.14E-03
31	GO:0004332: fructose-bisphosphate aldolase activity	3.14E-03
32	GO:0004130: cytochrome-c peroxidase activity	3.14E-03
33	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.14E-03
34	GO:0042578: phosphoric ester hydrolase activity	3.14E-03
35	GO:0031177: phosphopantetheine binding	3.14E-03
36	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	3.14E-03
37	GO:0016832: aldehyde-lyase activity	3.77E-03
38	GO:0004017: adenylate kinase activity	3.77E-03
39	GO:0000035: acyl binding	3.77E-03
40	GO:0016597: amino acid binding	4.55E-03
41	GO:0015250: water channel activity	4.82E-03
42	GO:0004525: ribonuclease III activity	5.17E-03
43	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	5.17E-03
44	GO:0043022: ribosome binding	5.17E-03
45	GO:0005096: GTPase activator activity	6.61E-03
46	GO:0009672: auxin:proton symporter activity	7.54E-03
47	GO:0015020: glucuronosyltransferase activity	8.40E-03
48	GO:0047372: acylglycerol lipase activity	9.30E-03
49	GO:0008794: arsenate reductase (glutaredoxin) activity	9.30E-03
50	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	1.02E-02
51	GO:0031072: heat shock protein binding	1.12E-02
52	GO:0004022: alcohol dehydrogenase (NAD) activity	1.12E-02
53	GO:0015171: amino acid transmembrane transporter activity	1.54E-02
54	GO:0003714: transcription corepressor activity	1.54E-02
55	GO:0043424: protein histidine kinase binding	1.65E-02
56	GO:0015079: potassium ion transmembrane transporter activity	1.65E-02
57	GO:0004176: ATP-dependent peptidase activity	1.76E-02
58	GO:0052689: carboxylic ester hydrolase activity	1.83E-02
59	GO:0016746: transferase activity, transferring acyl groups	2.05E-02
60	GO:0016787: hydrolase activity	2.09E-02
61	GO:0003756: protein disulfide isomerase activity	2.12E-02
62	GO:0004871: signal transducer activity	2.15E-02
63	GO:0016491: oxidoreductase activity	2.41E-02
64	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.50E-02
65	GO:0005355: glucose transmembrane transporter activity	2.64E-02
66	GO:0050662: coenzyme binding	2.64E-02
67	GO:0004252: serine-type endopeptidase activity	2.76E-02
68	GO:0009055: electron carrier activity	2.88E-02
69	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.91E-02
70	GO:0004518: nuclease activity	3.05E-02
71	GO:0051015: actin filament binding	3.19E-02
72	GO:0000156: phosphorelay response regulator activity	3.19E-02
73	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.20E-02
74	GO:0046910: pectinesterase inhibitor activity	3.20E-02
75	GO:0005525: GTP binding	3.33E-02
76	GO:0016791: phosphatase activity	3.34E-02
77	GO:0005200: structural constituent of cytoskeleton	3.48E-02
78	GO:0016301: kinase activity	3.83E-02
79	GO:0016168: chlorophyll binding	3.93E-02
80	GO:0008375: acetylglucosaminyltransferase activity	4.09E-02
81	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.25E-02
82	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.35E-02
83	GO:0008236: serine-type peptidase activity	4.41E-02
84	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.57E-02
85	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0009507: chloroplast	1.51E-23
3	GO:0009534: chloroplast thylakoid	5.85E-19
4	GO:0009543: chloroplast thylakoid lumen	2.97E-15
5	GO:0009535: chloroplast thylakoid membrane	2.07E-14
6	GO:0031977: thylakoid lumen	5.67E-13
7	GO:0009579: thylakoid	1.30E-11
8	GO:0009570: chloroplast stroma	5.37E-10
9	GO:0009941: chloroplast envelope	9.01E-09
10	GO:0010007: magnesium chelatase complex	2.80E-08
11	GO:0009533: chloroplast stromal thylakoid	2.30E-04
12	GO:0043674: columella	2.92E-04
13	GO:0009515: granal stacked thylakoid	2.92E-04
14	GO:0030093: chloroplast photosystem I	6.40E-04
15	GO:0010287: plastoglobule	7.78E-04
16	GO:0009508: plastid chromosome	8.88E-04
17	GO:0030095: chloroplast photosystem II	9.97E-04
18	GO:0015630: microtubule cytoskeleton	1.48E-03
19	GO:0009531: secondary cell wall	1.48E-03
20	GO:0042646: plastid nucleoid	1.48E-03
21	GO:0009654: photosystem II oxygen evolving complex	1.51E-03
22	GO:0005618: cell wall	1.72E-03
23	GO:0009522: photosystem I	2.91E-03
24	GO:0016020: membrane	3.04E-03
25	GO:0019898: extrinsic component of membrane	3.12E-03
26	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	3.14E-03
27	GO:0016363: nuclear matrix	3.77E-03
28	GO:0009295: nucleoid	4.30E-03
29	GO:0009986: cell surface	4.45E-03
30	GO:0042807: central vacuole	4.45E-03
31	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	5.92E-03
32	GO:0042644: chloroplast nucleoid	6.71E-03
33	GO:0008180: COP9 signalosome	6.71E-03
34	GO:0055028: cortical microtubule	8.40E-03
35	GO:0032040: small-subunit processome	1.02E-02
36	GO:0005578: proteinaceous extracellular matrix	1.12E-02
37	GO:0005886: plasma membrane	1.55E-02
38	GO:0031969: chloroplast membrane	1.61E-02
39	GO:0009706: chloroplast inner membrane	1.99E-02
40	GO:0015629: actin cytoskeleton	2.00E-02
41	GO:0009505: plant-type cell wall	2.22E-02
42	GO:0009523: photosystem II	2.77E-02
43	GO:0010319: stromule	3.48E-02
44	GO:0030529: intracellular ribonucleoprotein complex	3.78E-02
45	GO:0019005: SCF ubiquitin ligase complex	4.57E-02
46	GO:0005840: ribosome	4.80E-02