GO Enrichment Analysis of Co-expressed Genes with
AT1G60690
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 2 | GO:0006437: tyrosyl-tRNA aminoacylation | 0.00E+00 |
| 3 | GO:0019253: reductive pentose-phosphate cycle | 1.02E-06 |
| 4 | GO:0006096: glycolytic process | 4.54E-06 |
| 5 | GO:0006810: transport | 5.47E-06 |
| 6 | GO:0009767: photosynthetic electron transport chain | 7.18E-05 |
| 7 | GO:0043039: tRNA aminoacylation | 1.20E-04 |
| 8 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 1.20E-04 |
| 9 | GO:1904143: positive regulation of carotenoid biosynthetic process | 1.20E-04 |
| 10 | GO:0061077: chaperone-mediated protein folding | 1.48E-04 |
| 11 | GO:0006696: ergosterol biosynthetic process | 2.06E-04 |
| 12 | GO:0010239: chloroplast mRNA processing | 3.01E-04 |
| 13 | GO:0033014: tetrapyrrole biosynthetic process | 3.01E-04 |
| 14 | GO:0001678: cellular glucose homeostasis | 3.01E-04 |
| 15 | GO:2001141: regulation of RNA biosynthetic process | 3.01E-04 |
| 16 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 3.01E-04 |
| 17 | GO:0009416: response to light stimulus | 3.78E-04 |
| 18 | GO:0019464: glycine decarboxylation via glycine cleavage system | 4.04E-04 |
| 19 | GO:0006546: glycine catabolic process | 4.04E-04 |
| 20 | GO:0006479: protein methylation | 4.04E-04 |
| 21 | GO:0046686: response to cadmium ion | 4.27E-04 |
| 22 | GO:0010236: plastoquinone biosynthetic process | 5.13E-04 |
| 23 | GO:0042549: photosystem II stabilization | 6.29E-04 |
| 24 | GO:0016554: cytidine to uridine editing | 6.29E-04 |
| 25 | GO:0009853: photorespiration | 7.29E-04 |
| 26 | GO:0046835: carbohydrate phosphorylation | 7.50E-04 |
| 27 | GO:0042026: protein refolding | 7.50E-04 |
| 28 | GO:1901259: chloroplast rRNA processing | 7.50E-04 |
| 29 | GO:0006458: 'de novo' protein folding | 7.50E-04 |
| 30 | GO:0009854: oxidative photosynthetic carbon pathway | 7.50E-04 |
| 31 | GO:0009744: response to sucrose | 9.27E-04 |
| 32 | GO:0071482: cellular response to light stimulus | 1.14E-03 |
| 33 | GO:0009657: plastid organization | 1.14E-03 |
| 34 | GO:0017004: cytochrome complex assembly | 1.14E-03 |
| 35 | GO:0010206: photosystem II repair | 1.28E-03 |
| 36 | GO:0006783: heme biosynthetic process | 1.28E-03 |
| 37 | GO:0006779: porphyrin-containing compound biosynthetic process | 1.43E-03 |
| 38 | GO:1900865: chloroplast RNA modification | 1.43E-03 |
| 39 | GO:0009409: response to cold | 1.73E-03 |
| 40 | GO:0009773: photosynthetic electron transport in photosystem I | 1.75E-03 |
| 41 | GO:0006415: translational termination | 1.75E-03 |
| 42 | GO:0019684: photosynthesis, light reaction | 1.75E-03 |
| 43 | GO:0006352: DNA-templated transcription, initiation | 1.75E-03 |
| 44 | GO:0018119: peptidyl-cysteine S-nitrosylation | 1.75E-03 |
| 45 | GO:0045037: protein import into chloroplast stroma | 1.91E-03 |
| 46 | GO:0006006: glucose metabolic process | 2.08E-03 |
| 47 | GO:0009735: response to cytokinin | 2.15E-03 |
| 48 | GO:0010207: photosystem II assembly | 2.26E-03 |
| 49 | GO:0080147: root hair cell development | 2.81E-03 |
| 50 | GO:0006418: tRNA aminoacylation for protein translation | 3.01E-03 |
| 51 | GO:0080092: regulation of pollen tube growth | 3.41E-03 |
| 52 | GO:0016117: carotenoid biosynthetic process | 4.04E-03 |
| 53 | GO:0009741: response to brassinosteroid | 4.48E-03 |
| 54 | GO:0009658: chloroplast organization | 4.55E-03 |
| 55 | GO:0009646: response to absence of light | 4.71E-03 |
| 56 | GO:0006814: sodium ion transport | 4.71E-03 |
| 57 | GO:0032502: developmental process | 5.42E-03 |
| 58 | GO:0042128: nitrate assimilation | 7.20E-03 |
| 59 | GO:0009817: defense response to fungus, incompatible interaction | 8.03E-03 |
| 60 | GO:0009793: embryo development ending in seed dormancy | 1.71E-02 |
| 61 | GO:0006396: RNA processing | 1.83E-02 |
| 62 | GO:0009742: brassinosteroid mediated signaling pathway | 1.87E-02 |
| 63 | GO:0009790: embryo development | 2.35E-02 |
| 64 | GO:0009451: RNA modification | 2.69E-02 |
| 65 | GO:0008380: RNA splicing | 3.00E-02 |
| 66 | GO:0006970: response to osmotic stress | 3.81E-02 |
| 67 | GO:0009860: pollen tube growth | 3.81E-02 |
| 68 | GO:0080167: response to karrikin | 4.21E-02 |
| 69 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 4.31E-02 |
| 70 | GO:0045454: cell redox homeostasis | 4.78E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity | 0.00E+00 |
| 2 | GO:0046905: phytoene synthase activity | 0.00E+00 |
| 3 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 4 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 5 | GO:0004618: phosphoglycerate kinase activity | 1.46E-07 |
| 6 | GO:0005528: FK506 binding | 1.88E-06 |
| 7 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 1.00E-05 |
| 8 | GO:0004831: tyrosine-tRNA ligase activity | 4.88E-05 |
| 9 | GO:0004325: ferrochelatase activity | 4.88E-05 |
| 10 | GO:0051996: squalene synthase activity | 4.88E-05 |
| 11 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 7.31E-05 |
| 12 | GO:0004047: aminomethyltransferase activity | 1.20E-04 |
| 13 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 1.20E-04 |
| 14 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 1.20E-04 |
| 15 | GO:0004148: dihydrolipoyl dehydrogenase activity | 2.06E-04 |
| 16 | GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity | 3.01E-04 |
| 17 | GO:0008508: bile acid:sodium symporter activity | 3.01E-04 |
| 18 | GO:0008276: protein methyltransferase activity | 3.01E-04 |
| 19 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 3.01E-04 |
| 20 | GO:0016149: translation release factor activity, codon specific | 3.01E-04 |
| 21 | GO:0001053: plastid sigma factor activity | 4.04E-04 |
| 22 | GO:0019158: mannokinase activity | 4.04E-04 |
| 23 | GO:0005319: lipid transporter activity | 4.04E-04 |
| 24 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 4.04E-04 |
| 25 | GO:0016987: sigma factor activity | 4.04E-04 |
| 26 | GO:0005536: glucose binding | 4.04E-04 |
| 27 | GO:0004396: hexokinase activity | 4.04E-04 |
| 28 | GO:0080030: methyl indole-3-acetate esterase activity | 6.29E-04 |
| 29 | GO:0003747: translation release factor activity | 1.28E-03 |
| 30 | GO:0051082: unfolded protein binding | 1.73E-03 |
| 31 | GO:0044183: protein binding involved in protein folding | 1.75E-03 |
| 32 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 1.75E-03 |
| 33 | GO:0031072: heat shock protein binding | 2.08E-03 |
| 34 | GO:0019843: rRNA binding | 2.16E-03 |
| 35 | GO:0003756: protein disulfide isomerase activity | 3.82E-03 |
| 36 | GO:0004812: aminoacyl-tRNA ligase activity | 4.04E-03 |
| 37 | GO:0016853: isomerase activity | 4.71E-03 |
| 38 | GO:0048038: quinone binding | 5.18E-03 |
| 39 | GO:0008483: transaminase activity | 6.16E-03 |
| 40 | GO:0008237: metallopeptidase activity | 6.16E-03 |
| 41 | GO:0016597: amino acid binding | 6.42E-03 |
| 42 | GO:0003824: catalytic activity | 6.62E-03 |
| 43 | GO:0008236: serine-type peptidase activity | 7.75E-03 |
| 44 | GO:0004222: metalloendopeptidase activity | 8.60E-03 |
| 45 | GO:0050897: cobalt ion binding | 8.88E-03 |
| 46 | GO:0004519: endonuclease activity | 9.04E-03 |
| 47 | GO:0050661: NADP binding | 1.04E-02 |
| 48 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.20E-02 |
| 49 | GO:0005198: structural molecule activity | 1.23E-02 |
| 50 | GO:0051287: NAD binding | 1.30E-02 |
| 51 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.40E-02 |
| 52 | GO:0016787: hydrolase activity | 1.55E-02 |
| 53 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 1.61E-02 |
| 54 | GO:0005524: ATP binding | 1.62E-02 |
| 55 | GO:0022857: transmembrane transporter activity | 1.72E-02 |
| 56 | GO:0016740: transferase activity | 1.81E-02 |
| 57 | GO:0016746: transferase activity, transferring acyl groups | 1.83E-02 |
| 58 | GO:0004252: serine-type endopeptidase activity | 2.27E-02 |
| 59 | GO:0008565: protein transporter activity | 2.39E-02 |
| 60 | GO:0005509: calcium ion binding | 2.77E-02 |
| 61 | GO:0008168: methyltransferase activity | 3.52E-02 |
| 62 | GO:0016788: hydrolase activity, acting on ester bonds | 3.66E-02 |
| 63 | GO:0050660: flavin adenine dinucleotide binding | 4.01E-02 |
| 64 | GO:0004672: protein kinase activity | 4.39E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009344: nitrite reductase complex [NAD(P)H] | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 8.36E-27 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 1.71E-15 |
| 4 | GO:0009941: chloroplast envelope | 3.35E-13 |
| 5 | GO:0009570: chloroplast stroma | 5.49E-11 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 1.18E-10 |
| 7 | GO:0009534: chloroplast thylakoid | 2.61E-07 |
| 8 | GO:0031969: chloroplast membrane | 4.07E-06 |
| 9 | GO:0009579: thylakoid | 4.72E-06 |
| 10 | GO:0010319: stromule | 1.43E-05 |
| 11 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.98E-05 |
| 12 | GO:0043190: ATP-binding cassette (ABC) transporter complex | 4.88E-05 |
| 13 | GO:0030095: chloroplast photosystem II | 8.25E-05 |
| 14 | GO:0009654: photosystem II oxygen evolving complex | 1.33E-04 |
| 15 | GO:0019898: extrinsic component of membrane | 2.90E-04 |
| 16 | GO:0005960: glycine cleavage complex | 3.01E-04 |
| 17 | GO:0055035: plastid thylakoid membrane | 5.13E-04 |
| 18 | GO:0031977: thylakoid lumen | 8.59E-04 |
| 19 | GO:0016324: apical plasma membrane | 1.59E-03 |
| 20 | GO:0009706: chloroplast inner membrane | 1.73E-03 |
| 21 | GO:0031307: integral component of mitochondrial outer membrane | 1.91E-03 |
| 22 | GO:0010287: plastoglobule | 2.04E-03 |
| 23 | GO:0009508: plastid chromosome | 2.08E-03 |
| 24 | GO:0009523: photosystem II | 4.94E-03 |
| 25 | GO:0009295: nucleoid | 6.16E-03 |
| 26 | GO:0048046: apoplast | 7.75E-03 |
| 27 | GO:0009707: chloroplast outer membrane | 8.03E-03 |
| 28 | GO:0005747: mitochondrial respiratory chain complex I | 1.61E-02 |
| 29 | GO:0005623: cell | 2.14E-02 |
| 30 | GO:0005759: mitochondrial matrix | 2.47E-02 |
| 31 | GO:0009536: plastid | 3.68E-02 |
| 32 | GO:0005829: cytosol | 4.07E-02 |