GO Enrichment Analysis of Co-expressed Genes with
AT1G60600
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 2 | GO:0006780: uroporphyrinogen III biosynthetic process | 0.00E+00 |
| 3 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 4 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 5 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 6 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 7 | GO:0015805: S-adenosyl-L-methionine transport | 0.00E+00 |
| 8 | GO:0042493: response to drug | 0.00E+00 |
| 9 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 10 | GO:0006412: translation | 7.66E-13 |
| 11 | GO:0032544: plastid translation | 5.17E-10 |
| 12 | GO:0042254: ribosome biogenesis | 1.35E-09 |
| 13 | GO:0015979: photosynthesis | 6.77E-09 |
| 14 | GO:0015995: chlorophyll biosynthetic process | 6.77E-08 |
| 15 | GO:0009658: chloroplast organization | 3.81E-07 |
| 16 | GO:0090391: granum assembly | 1.03E-05 |
| 17 | GO:0010027: thylakoid membrane organization | 3.40E-05 |
| 18 | GO:1901259: chloroplast rRNA processing | 1.37E-04 |
| 19 | GO:0010196: nonphotochemical quenching | 1.80E-04 |
| 20 | GO:0048564: photosystem I assembly | 2.28E-04 |
| 21 | GO:0006353: DNA-templated transcription, termination | 2.28E-04 |
| 22 | GO:0071588: hydrogen peroxide mediated signaling pathway | 2.48E-04 |
| 23 | GO:0043489: RNA stabilization | 2.48E-04 |
| 24 | GO:1904966: positive regulation of vitamin E biosynthetic process | 2.48E-04 |
| 25 | GO:1904964: positive regulation of phytol biosynthetic process | 2.48E-04 |
| 26 | GO:0042759: long-chain fatty acid biosynthetic process | 2.48E-04 |
| 27 | GO:0042371: vitamin K biosynthetic process | 2.48E-04 |
| 28 | GO:0034337: RNA folding | 2.48E-04 |
| 29 | GO:0071482: cellular response to light stimulus | 2.82E-04 |
| 30 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 5.49E-04 |
| 31 | GO:0034755: iron ion transmembrane transport | 5.49E-04 |
| 32 | GO:0006568: tryptophan metabolic process | 5.49E-04 |
| 33 | GO:0009735: response to cytokinin | 6.22E-04 |
| 34 | GO:0016024: CDP-diacylglycerol biosynthetic process | 6.25E-04 |
| 35 | GO:0010207: photosystem II assembly | 7.98E-04 |
| 36 | GO:0046168: glycerol-3-phosphate catabolic process | 8.92E-04 |
| 37 | GO:0006013: mannose metabolic process | 8.92E-04 |
| 38 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 8.92E-04 |
| 39 | GO:0009451: RNA modification | 9.94E-04 |
| 40 | GO:0010239: chloroplast mRNA processing | 1.27E-03 |
| 41 | GO:0006072: glycerol-3-phosphate metabolic process | 1.27E-03 |
| 42 | GO:0010088: phloem development | 1.27E-03 |
| 43 | GO:0009650: UV protection | 1.27E-03 |
| 44 | GO:1901332: negative regulation of lateral root development | 1.27E-03 |
| 45 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 1.27E-03 |
| 46 | GO:2001141: regulation of RNA biosynthetic process | 1.27E-03 |
| 47 | GO:0009413: response to flooding | 1.27E-03 |
| 48 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.57E-03 |
| 49 | GO:0042335: cuticle development | 1.99E-03 |
| 50 | GO:0000413: protein peptidyl-prolyl isomerization | 1.99E-03 |
| 51 | GO:0048359: mucilage metabolic process involved in seed coat development | 2.17E-03 |
| 52 | GO:0006564: L-serine biosynthetic process | 2.17E-03 |
| 53 | GO:0045038: protein import into chloroplast thylakoid membrane | 2.17E-03 |
| 54 | GO:0031365: N-terminal protein amino acid modification | 2.17E-03 |
| 55 | GO:0000470: maturation of LSU-rRNA | 2.67E-03 |
| 56 | GO:0032973: amino acid export | 2.67E-03 |
| 57 | GO:0006655: phosphatidylglycerol biosynthetic process | 2.67E-03 |
| 58 | GO:0042549: photosystem II stabilization | 2.67E-03 |
| 59 | GO:0009828: plant-type cell wall loosening | 3.20E-03 |
| 60 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.21E-03 |
| 61 | GO:0017148: negative regulation of translation | 3.21E-03 |
| 62 | GO:0010019: chloroplast-nucleus signaling pathway | 3.21E-03 |
| 63 | GO:0043090: amino acid import | 3.79E-03 |
| 64 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 3.79E-03 |
| 65 | GO:0006869: lipid transport | 3.90E-03 |
| 66 | GO:0045292: mRNA cis splicing, via spliceosome | 4.39E-03 |
| 67 | GO:0042255: ribosome assembly | 4.39E-03 |
| 68 | GO:0010206: photosystem II repair | 5.70E-03 |
| 69 | GO:0080144: amino acid homeostasis | 5.70E-03 |
| 70 | GO:0000373: Group II intron splicing | 5.70E-03 |
| 71 | GO:0015780: nucleotide-sugar transport | 5.70E-03 |
| 72 | GO:0009631: cold acclimation | 5.75E-03 |
| 73 | GO:0006779: porphyrin-containing compound biosynthetic process | 6.40E-03 |
| 74 | GO:0034599: cellular response to oxidative stress | 6.59E-03 |
| 75 | GO:0006782: protoporphyrinogen IX biosynthetic process | 7.12E-03 |
| 76 | GO:0006535: cysteine biosynthetic process from serine | 7.12E-03 |
| 77 | GO:0045036: protein targeting to chloroplast | 7.12E-03 |
| 78 | GO:0006949: syncytium formation | 7.12E-03 |
| 79 | GO:0030001: metal ion transport | 7.18E-03 |
| 80 | GO:0009773: photosynthetic electron transport in photosystem I | 7.88E-03 |
| 81 | GO:0043085: positive regulation of catalytic activity | 7.88E-03 |
| 82 | GO:0006879: cellular iron ion homeostasis | 7.88E-03 |
| 83 | GO:0006352: DNA-templated transcription, initiation | 7.88E-03 |
| 84 | GO:0010114: response to red light | 8.13E-03 |
| 85 | GO:0006006: glucose metabolic process | 9.47E-03 |
| 86 | GO:0009664: plant-type cell wall organization | 1.02E-02 |
| 87 | GO:0010143: cutin biosynthetic process | 1.03E-02 |
| 88 | GO:0019253: reductive pentose-phosphate cycle | 1.03E-02 |
| 89 | GO:0010025: wax biosynthetic process | 1.21E-02 |
| 90 | GO:0019344: cysteine biosynthetic process | 1.30E-02 |
| 91 | GO:0000027: ribosomal large subunit assembly | 1.30E-02 |
| 92 | GO:0051017: actin filament bundle assembly | 1.30E-02 |
| 93 | GO:0006418: tRNA aminoacylation for protein translation | 1.39E-02 |
| 94 | GO:0045454: cell redox homeostasis | 1.50E-02 |
| 95 | GO:0016226: iron-sulfur cluster assembly | 1.59E-02 |
| 96 | GO:0009411: response to UV | 1.69E-02 |
| 97 | GO:0080022: primary root development | 2.01E-02 |
| 98 | GO:0008033: tRNA processing | 2.01E-02 |
| 99 | GO:0006662: glycerol ether metabolic process | 2.12E-02 |
| 100 | GO:0007018: microtubule-based movement | 2.23E-02 |
| 101 | GO:0009790: embryo development | 2.29E-02 |
| 102 | GO:0000302: response to reactive oxygen species | 2.46E-02 |
| 103 | GO:0032502: developmental process | 2.58E-02 |
| 104 | GO:0006508: proteolysis | 2.63E-02 |
| 105 | GO:0030163: protein catabolic process | 2.70E-02 |
| 106 | GO:0045490: pectin catabolic process | 2.71E-02 |
| 107 | GO:0009567: double fertilization forming a zygote and endosperm | 2.82E-02 |
| 108 | GO:0009739: response to gibberellin | 3.03E-02 |
| 109 | GO:0042742: defense response to bacterium | 3.19E-02 |
| 110 | GO:0009627: systemic acquired resistance | 3.46E-02 |
| 111 | GO:0009817: defense response to fungus, incompatible interaction | 3.86E-02 |
| 112 | GO:0048481: plant ovule development | 3.86E-02 |
| 113 | GO:0018298: protein-chromophore linkage | 3.86E-02 |
| 114 | GO:0010311: lateral root formation | 4.00E-02 |
| 115 | GO:0009826: unidimensional cell growth | 4.03E-02 |
| 116 | GO:0007568: aging | 4.28E-02 |
| 117 | GO:0045087: innate immune response | 4.56E-02 |
| 118 | GO:0009637: response to blue light | 4.56E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 2 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 3 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 4 | GO:0047661: amino-acid racemase activity | 0.00E+00 |
| 5 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 6 | GO:0004852: uroporphyrinogen-III synthase activity | 0.00E+00 |
| 7 | GO:0005048: signal sequence binding | 0.00E+00 |
| 8 | GO:0019843: rRNA binding | 6.63E-21 |
| 9 | GO:0003735: structural constituent of ribosome | 8.88E-14 |
| 10 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.83E-08 |
| 11 | GO:0016851: magnesium chelatase activity | 8.84E-08 |
| 12 | GO:0005528: FK506 binding | 2.18E-06 |
| 13 | GO:0043023: ribosomal large subunit binding | 2.34E-05 |
| 14 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 9.94E-05 |
| 15 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 2.48E-04 |
| 16 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 2.48E-04 |
| 17 | GO:0005080: protein kinase C binding | 2.48E-04 |
| 18 | GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity | 2.48E-04 |
| 19 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 5.49E-04 |
| 20 | GO:0008805: carbon-monoxide oxygenase activity | 5.49E-04 |
| 21 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 5.49E-04 |
| 22 | GO:0016630: protochlorophyllide reductase activity | 5.49E-04 |
| 23 | GO:0004617: phosphoglycerate dehydrogenase activity | 5.49E-04 |
| 24 | GO:0008266: poly(U) RNA binding | 7.98E-04 |
| 25 | GO:0002161: aminoacyl-tRNA editing activity | 8.92E-04 |
| 26 | GO:0030267: glyoxylate reductase (NADP) activity | 8.92E-04 |
| 27 | GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity | 8.92E-04 |
| 28 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 8.92E-04 |
| 29 | GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity | 8.92E-04 |
| 30 | GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity | 8.92E-04 |
| 31 | GO:0008097: 5S rRNA binding | 1.27E-03 |
| 32 | GO:0001872: (1->3)-beta-D-glucan binding | 1.27E-03 |
| 33 | GO:0051287: NAD binding | 1.45E-03 |
| 34 | GO:0030570: pectate lyase activity | 1.57E-03 |
| 35 | GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed | 1.70E-03 |
| 36 | GO:0016987: sigma factor activity | 1.70E-03 |
| 37 | GO:0043495: protein anchor | 1.70E-03 |
| 38 | GO:0001053: plastid sigma factor activity | 1.70E-03 |
| 39 | GO:0016788: hydrolase activity, acting on ester bonds | 1.91E-03 |
| 40 | GO:0004040: amidase activity | 2.17E-03 |
| 41 | GO:0003959: NADPH dehydrogenase activity | 2.17E-03 |
| 42 | GO:0005509: calcium ion binding | 2.56E-03 |
| 43 | GO:0004130: cytochrome-c peroxidase activity | 2.67E-03 |
| 44 | GO:0016688: L-ascorbate peroxidase activity | 2.67E-03 |
| 45 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 2.67E-03 |
| 46 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 3.21E-03 |
| 47 | GO:0004559: alpha-mannosidase activity | 3.21E-03 |
| 48 | GO:0004124: cysteine synthase activity | 3.21E-03 |
| 49 | GO:0051920: peroxiredoxin activity | 3.21E-03 |
| 50 | GO:0008235: metalloexopeptidase activity | 3.79E-03 |
| 51 | GO:0019899: enzyme binding | 3.79E-03 |
| 52 | GO:0008312: 7S RNA binding | 4.39E-03 |
| 53 | GO:0004033: aldo-keto reductase (NADP) activity | 4.39E-03 |
| 54 | GO:0052747: sinapyl alcohol dehydrogenase activity | 4.39E-03 |
| 55 | GO:0043022: ribosome binding | 4.39E-03 |
| 56 | GO:0016209: antioxidant activity | 4.39E-03 |
| 57 | GO:0008236: serine-type peptidase activity | 4.72E-03 |
| 58 | GO:0003723: RNA binding | 5.67E-03 |
| 59 | GO:0005381: iron ion transmembrane transporter activity | 6.40E-03 |
| 60 | GO:0047617: acyl-CoA hydrolase activity | 6.40E-03 |
| 61 | GO:0008047: enzyme activator activity | 7.12E-03 |
| 62 | GO:0008289: lipid binding | 7.71E-03 |
| 63 | GO:0004177: aminopeptidase activity | 7.88E-03 |
| 64 | GO:0000049: tRNA binding | 8.66E-03 |
| 65 | GO:0045551: cinnamyl-alcohol dehydrogenase activity | 8.66E-03 |
| 66 | GO:0043621: protein self-association | 8.79E-03 |
| 67 | GO:0008081: phosphoric diester hydrolase activity | 9.47E-03 |
| 68 | GO:0003777: microtubule motor activity | 1.22E-02 |
| 69 | GO:0051536: iron-sulfur cluster binding | 1.30E-02 |
| 70 | GO:0022891: substrate-specific transmembrane transporter activity | 1.69E-02 |
| 71 | GO:0003727: single-stranded RNA binding | 1.79E-02 |
| 72 | GO:0008514: organic anion transmembrane transporter activity | 1.79E-02 |
| 73 | GO:0047134: protein-disulfide reductase activity | 1.90E-02 |
| 74 | GO:0004812: aminoacyl-tRNA ligase activity | 1.90E-02 |
| 75 | GO:0003729: mRNA binding | 1.99E-02 |
| 76 | GO:0008080: N-acetyltransferase activity | 2.12E-02 |
| 77 | GO:0016829: lyase activity | 2.13E-02 |
| 78 | GO:0004519: endonuclease activity | 2.18E-02 |
| 79 | GO:0004791: thioredoxin-disulfide reductase activity | 2.23E-02 |
| 80 | GO:0004518: nuclease activity | 2.58E-02 |
| 81 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.70E-02 |
| 82 | GO:0051015: actin filament binding | 2.70E-02 |
| 83 | GO:0016791: phosphatase activity | 2.82E-02 |
| 84 | GO:0008017: microtubule binding | 2.84E-02 |
| 85 | GO:0008237: metallopeptidase activity | 2.94E-02 |
| 86 | GO:0016597: amino acid binding | 3.07E-02 |
| 87 | GO:0016168: chlorophyll binding | 3.32E-02 |
| 88 | GO:0042802: identical protein binding | 3.44E-02 |
| 89 | GO:0030247: polysaccharide binding | 3.59E-02 |
| 90 | GO:0004721: phosphoprotein phosphatase activity | 3.59E-02 |
| 91 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 3.86E-02 |
| 92 | GO:0008168: methyltransferase activity | 4.03E-02 |
| 93 | GO:0004222: metalloendopeptidase activity | 4.14E-02 |
| 94 | GO:0046872: metal ion binding | 4.65E-02 |
| 95 | GO:0016491: oxidoreductase activity | 4.74E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 2 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 2.02E-47 |
| 4 | GO:0009570: chloroplast stroma | 3.68E-45 |
| 5 | GO:0009941: chloroplast envelope | 2.79E-26 |
| 6 | GO:0009579: thylakoid | 1.03E-25 |
| 7 | GO:0009535: chloroplast thylakoid membrane | 4.80E-20 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 3.31E-19 |
| 9 | GO:0031977: thylakoid lumen | 8.14E-19 |
| 10 | GO:0005840: ribosome | 1.44E-17 |
| 11 | GO:0009534: chloroplast thylakoid | 9.14E-15 |
| 12 | GO:0009654: photosystem II oxygen evolving complex | 7.12E-10 |
| 13 | GO:0019898: extrinsic component of membrane | 9.12E-09 |
| 14 | GO:0010007: magnesium chelatase complex | 1.82E-08 |
| 15 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 2.48E-04 |
| 16 | GO:0009547: plastid ribosome | 2.48E-04 |
| 17 | GO:0046658: anchored component of plasma membrane | 2.72E-04 |
| 18 | GO:0080085: signal recognition particle, chloroplast targeting | 5.49E-04 |
| 19 | GO:0000311: plastid large ribosomal subunit | 6.25E-04 |
| 20 | GO:0048046: apoplast | 6.97E-04 |
| 21 | GO:0030095: chloroplast photosystem II | 7.98E-04 |
| 22 | GO:0000312: plastid small ribosomal subunit | 7.98E-04 |
| 23 | GO:0009509: chromoplast | 8.92E-04 |
| 24 | GO:0042651: thylakoid membrane | 1.20E-03 |
| 25 | GO:0009331: glycerol-3-phosphate dehydrogenase complex | 1.27E-03 |
| 26 | GO:0009533: chloroplast stromal thylakoid | 3.79E-03 |
| 27 | GO:0009536: plastid | 4.48E-03 |
| 28 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 5.03E-03 |
| 29 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 5.70E-03 |
| 30 | GO:0031225: anchored component of membrane | 6.37E-03 |
| 31 | GO:0005618: cell wall | 6.55E-03 |
| 32 | GO:0016020: membrane | 7.48E-03 |
| 33 | GO:0032040: small-subunit processome | 8.66E-03 |
| 34 | GO:0031969: chloroplast membrane | 1.20E-02 |
| 35 | GO:0022625: cytosolic large ribosomal subunit | 1.27E-02 |
| 36 | GO:0009505: plant-type cell wall | 1.48E-02 |
| 37 | GO:0015935: small ribosomal subunit | 1.49E-02 |
| 38 | GO:0015629: actin cytoskeleton | 1.69E-02 |
| 39 | GO:0005871: kinesin complex | 1.90E-02 |
| 40 | GO:0009523: photosystem II | 2.34E-02 |
| 41 | GO:0010319: stromule | 2.94E-02 |
| 42 | GO:0009295: nucleoid | 2.94E-02 |
| 43 | GO:0030529: intracellular ribonucleoprotein complex | 3.19E-02 |
| 44 | GO:0022627: cytosolic small ribosomal subunit | 3.59E-02 |
| 45 | GO:0009707: chloroplast outer membrane | 3.86E-02 |
| 46 | GO:0015934: large ribosomal subunit | 4.28E-02 |
| 47 | GO:0005819: spindle | 4.86E-02 |
| 48 | GO:0005874: microtubule | 5.00E-02 |