co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G60590

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010423: negative regulation of brassinosteroid biosynthetic process	0.00E+00
2	GO:0009264: deoxyribonucleotide catabolic process	0.00E+00
3	GO:0015822: ornithine transport	0.00E+00
4	GO:0016048: detection of temperature stimulus	0.00E+00
5	GO:0080094: response to trehalose-6-phosphate	0.00E+00
6	GO:0080167: response to karrikin	2.98E-08
7	GO:0051555: flavonol biosynthetic process	3.95E-08
8	GO:0009963: positive regulation of flavonoid biosynthetic process	8.07E-06
9	GO:0010218: response to far red light	1.29E-05
10	GO:0071555: cell wall organization	1.63E-05
11	GO:0045489: pectin biosynthetic process	5.85E-05
12	GO:0006169: adenosine salvage	1.35E-04
13	GO:0006659: phosphatidylserine biosynthetic process	1.35E-04
14	GO:0048438: floral whorl development	1.35E-04
15	GO:0000066: mitochondrial ornithine transport	1.35E-04
16	GO:0019510: S-adenosylhomocysteine catabolic process	1.35E-04
17	GO:0051171: regulation of nitrogen compound metabolic process	1.35E-04
18	GO:1901349: glucosinolate transport	1.35E-04
19	GO:0031539: positive regulation of anthocyanin metabolic process	1.35E-04
20	GO:0090449: phloem glucosinolate loading	1.35E-04
21	GO:0009813: flavonoid biosynthetic process	2.18E-04
22	GO:0033353: S-adenosylmethionine cycle	3.11E-04
23	GO:0010220: positive regulation of vernalization response	3.11E-04
24	GO:1900386: positive regulation of flavonol biosynthetic process	3.11E-04
25	GO:0006152: purine nucleoside catabolic process	3.11E-04
26	GO:0015712: hexose phosphate transport	3.11E-04
27	GO:0010114: response to red light	3.93E-04
28	GO:0035436: triose phosphate transmembrane transport	5.13E-04
29	GO:0010253: UDP-rhamnose biosynthetic process	5.13E-04
30	GO:0006651: diacylglycerol biosynthetic process	5.13E-04
31	GO:0010224: response to UV-B	6.00E-04
32	GO:0030154: cell differentiation	6.43E-04
33	GO:0009909: regulation of flower development	6.53E-04
34	GO:0009411: response to UV	6.94E-04
35	GO:0010255: glucose mediated signaling pathway	7.34E-04
36	GO:0006021: inositol biosynthetic process	9.73E-04
37	GO:0009765: photosynthesis, light harvesting	9.73E-04
38	GO:0015713: phosphoglycerate transport	9.73E-04
39	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.15E-03
40	GO:0044209: AMP salvage	1.23E-03
41	GO:0009635: response to herbicide	1.51E-03
42	GO:0009643: photosynthetic acclimation	1.51E-03
43	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.51E-03
44	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.51E-03
45	GO:0010315: auxin efflux	1.51E-03
46	GO:0000060: protein import into nucleus, translocation	1.51E-03
47	GO:0007623: circadian rhythm	1.76E-03
48	GO:0010076: maintenance of floral meristem identity	1.81E-03
49	GO:0017148: negative regulation of translation	1.81E-03
50	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	1.81E-03
51	GO:0010077: maintenance of inflorescence meristem identity	1.81E-03
52	GO:0052543: callose deposition in cell wall	2.46E-03
53	GO:0007155: cell adhesion	2.46E-03
54	GO:0009787: regulation of abscisic acid-activated signaling pathway	2.46E-03
55	GO:0044030: regulation of DNA methylation	2.81E-03
56	GO:0010099: regulation of photomorphogenesis	2.81E-03
57	GO:0022900: electron transport chain	2.81E-03
58	GO:0046916: cellular transition metal ion homeostasis	3.17E-03
59	GO:0010018: far-red light signaling pathway	3.55E-03
60	GO:0010380: regulation of chlorophyll biosynthetic process	3.55E-03
61	GO:0042546: cell wall biogenesis	3.60E-03
62	GO:0045036: protein targeting to chloroplast	3.95E-03
63	GO:0010192: mucilage biosynthetic process	3.95E-03
64	GO:0000272: polysaccharide catabolic process	4.36E-03
65	GO:0009698: phenylpropanoid metabolic process	4.36E-03
66	GO:0015706: nitrate transport	4.79E-03
67	GO:0016925: protein sumoylation	4.79E-03
68	GO:0016024: CDP-diacylglycerol biosynthetic process	4.79E-03
69	GO:0010582: floral meristem determinacy	4.79E-03
70	GO:0006857: oligopeptide transport	4.99E-03
71	GO:0010223: secondary shoot formation	5.68E-03
72	GO:0009934: regulation of meristem structural organization	5.68E-03
73	GO:0010143: cutin biosynthetic process	5.68E-03
74	GO:0009225: nucleotide-sugar metabolic process	6.14E-03
75	GO:0010167: response to nitrate	6.14E-03
76	GO:0009740: gibberellic acid mediated signaling pathway	6.23E-03
77	GO:0042753: positive regulation of circadian rhythm	6.62E-03
78	GO:0009833: plant-type primary cell wall biogenesis	6.62E-03
79	GO:0010187: negative regulation of seed germination	7.11E-03
80	GO:0009768: photosynthesis, light harvesting in photosystem I	7.62E-03
81	GO:0051260: protein homooligomerization	8.14E-03
82	GO:0010017: red or far-red light signaling pathway	8.67E-03
83	GO:0006730: one-carbon metabolic process	8.67E-03
84	GO:0040007: growth	9.21E-03
85	GO:0042127: regulation of cell proliferation	9.77E-03
86	GO:0010584: pollen exine formation	9.77E-03
87	GO:0016117: carotenoid biosynthetic process	1.03E-02
88	GO:0000271: polysaccharide biosynthetic process	1.09E-02
89	GO:0015991: ATP hydrolysis coupled proton transport	1.09E-02
90	GO:0009958: positive gravitropism	1.15E-02
91	GO:0006520: cellular amino acid metabolic process	1.15E-02
92	GO:0006342: chromatin silencing	1.15E-02
93	GO:0009908: flower development	1.20E-02
94	GO:0015986: ATP synthesis coupled proton transport	1.21E-02
95	GO:0007059: chromosome segregation	1.21E-02
96	GO:0008654: phospholipid biosynthetic process	1.27E-02
97	GO:0009791: post-embryonic development	1.27E-02
98	GO:0009739: response to gibberellin	1.28E-02
99	GO:0071554: cell wall organization or biogenesis	1.34E-02
100	GO:0009416: response to light stimulus	1.36E-02
101	GO:0010468: regulation of gene expression	1.37E-02
102	GO:0010583: response to cyclopentenone	1.40E-02
103	GO:0016032: viral process	1.40E-02
104	GO:0007264: small GTPase mediated signal transduction	1.40E-02
105	GO:1901657: glycosyl compound metabolic process	1.46E-02
106	GO:0016125: sterol metabolic process	1.53E-02
107	GO:0051607: defense response to virus	1.66E-02
108	GO:0009911: positive regulation of flower development	1.73E-02
109	GO:0042128: nitrate assimilation	1.88E-02
110	GO:0048573: photoperiodism, flowering	1.95E-02
111	GO:0016311: dephosphorylation	2.02E-02
112	GO:0030244: cellulose biosynthetic process	2.09E-02
113	GO:0018298: protein-chromophore linkage	2.09E-02
114	GO:0009832: plant-type cell wall biogenesis	2.17E-02
115	GO:0009407: toxin catabolic process	2.24E-02
116	GO:0010119: regulation of stomatal movement	2.32E-02
117	GO:0009910: negative regulation of flower development	2.32E-02
118	GO:0016051: carbohydrate biosynthetic process	2.48E-02
119	GO:0009637: response to blue light	2.48E-02
120	GO:0030001: metal ion transport	2.72E-02
121	GO:0006839: mitochondrial transport	2.72E-02
122	GO:0006631: fatty acid metabolic process	2.80E-02
123	GO:0009926: auxin polar transport	2.97E-02
124	GO:0009640: photomorphogenesis	2.97E-02
125	GO:0009636: response to toxic substance	3.23E-02
126	GO:0006629: lipid metabolic process	3.26E-02
127	GO:0000165: MAPK cascade	3.40E-02
128	GO:0009753: response to jasmonic acid	3.49E-02
129	GO:0008152: metabolic process	3.59E-02
130	GO:0009809: lignin biosynthetic process	3.67E-02
131	GO:0009585: red, far-red light phototransduction	3.67E-02
132	GO:0009733: response to auxin	3.82E-02
133	GO:0043086: negative regulation of catalytic activity	4.13E-02
134	GO:0051726: regulation of cell cycle	4.91E-02
135	GO:0009742: brassinosteroid mediated signaling pathway	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0047974: guanosine deaminase activity	0.00E+00
2	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
3	GO:0016757: transferase activity, transferring glycosyl groups	5.26E-06
4	GO:0045430: chalcone isomerase activity	1.51E-05
5	GO:0016759: cellulose synthase activity	1.08E-04
6	GO:0090448: glucosinolate:proton symporter activity	1.35E-04
7	GO:0045486: naringenin 3-dioxygenase activity	1.35E-04
8	GO:0016817: hydrolase activity, acting on acid anhydrides	1.35E-04
9	GO:0004013: adenosylhomocysteinase activity	1.35E-04
10	GO:0010313: phytochrome binding	1.35E-04
11	GO:0004001: adenosine kinase activity	1.35E-04
12	GO:0004566: beta-glucuronidase activity	3.11E-04
13	GO:0008460: dTDP-glucose 4,6-dehydratase activity	3.11E-04
14	GO:0010280: UDP-L-rhamnose synthase activity	3.11E-04
15	GO:0000064: L-ornithine transmembrane transporter activity	3.11E-04
16	GO:0050377: UDP-glucose 4,6-dehydratase activity	3.11E-04
17	GO:0004512: inositol-3-phosphate synthase activity	3.11E-04
18	GO:0048531: beta-1,3-galactosyltransferase activity	3.11E-04
19	GO:0071917: triose-phosphate transmembrane transporter activity	5.13E-04
20	GO:0004838: L-tyrosine:2-oxoglutarate aminotransferase activity	5.13E-04
21	GO:0008253: 5'-nucleotidase activity	5.13E-04
22	GO:0001872: (1->3)-beta-D-glucan binding	7.34E-04
23	GO:0048027: mRNA 5'-UTR binding	7.34E-04
24	GO:0098599: palmitoyl hydrolase activity	9.73E-04
25	GO:0046527: glucosyltransferase activity	9.73E-04
26	GO:0015120: phosphoglycerate transmembrane transporter activity	9.73E-04
27	GO:0080032: methyl jasmonate esterase activity	9.73E-04
28	GO:0031386: protein tag	1.23E-03
29	GO:0045431: flavonol synthase activity	1.23E-03
30	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	1.38E-03
31	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.51E-03
32	GO:0080030: methyl indole-3-acetate esterase activity	1.51E-03
33	GO:0008474: palmitoyl-(protein) hydrolase activity	1.51E-03
34	GO:0008429: phosphatidylethanolamine binding	1.51E-03
35	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.51E-03
36	GO:0102229: amylopectin maltohydrolase activity	1.51E-03
37	GO:0008195: phosphatidate phosphatase activity	1.81E-03
38	GO:0016161: beta-amylase activity	1.81E-03
39	GO:0043295: glutathione binding	2.12E-03
40	GO:0016621: cinnamoyl-CoA reductase activity	2.12E-03
41	GO:0004714: transmembrane receptor protein tyrosine kinase activity	2.46E-03
42	GO:0046914: transition metal ion binding	2.81E-03
43	GO:0046982: protein heterodimerization activity	2.98E-03
44	GO:0016207: 4-coumarate-CoA ligase activity	3.17E-03
45	GO:0015112: nitrate transmembrane transporter activity	3.55E-03
46	GO:0046961: proton-transporting ATPase activity, rotational mechanism	4.36E-03
47	GO:0047372: acylglycerol lipase activity	4.36E-03
48	GO:0004860: protein kinase inhibitor activity	4.36E-03
49	GO:0004175: endopeptidase activity	5.68E-03
50	GO:0080043: quercetin 3-O-glucosyltransferase activity	6.05E-03
51	GO:0080044: quercetin 7-O-glucosyltransferase activity	6.05E-03
52	GO:0051119: sugar transmembrane transporter activity	6.14E-03
53	GO:0031409: pigment binding	6.62E-03
54	GO:0031418: L-ascorbic acid binding	7.11E-03
55	GO:0004176: ATP-dependent peptidase activity	8.14E-03
56	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	8.67E-03
57	GO:0016760: cellulose synthase (UDP-forming) activity	9.21E-03
58	GO:0003824: catalytic activity	1.01E-02
59	GO:0005215: transporter activity	1.03E-02
60	GO:0015297: antiporter activity	1.09E-02
61	GO:0001085: RNA polymerase II transcription factor binding	1.15E-02
62	GO:0005355: glucose transmembrane transporter activity	1.21E-02
63	GO:0016853: isomerase activity	1.21E-02
64	GO:0019901: protein kinase binding	1.27E-02
65	GO:0008194: UDP-glycosyltransferase activity	1.28E-02
66	GO:0004518: nuclease activity	1.40E-02
67	GO:0016791: phosphatase activity	1.53E-02
68	GO:0008483: transaminase activity	1.60E-02
69	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.60E-02
70	GO:0008237: metallopeptidase activity	1.60E-02
71	GO:0016413: O-acetyltransferase activity	1.66E-02
72	GO:0016168: chlorophyll binding	1.80E-02
73	GO:0016788: hydrolase activity, acting on ester bonds	1.81E-02
74	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.95E-02
75	GO:0102483: scopolin beta-glucosidase activity	1.95E-02
76	GO:0030247: polysaccharide binding	1.95E-02
77	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.24E-02
78	GO:0004222: metalloendopeptidase activity	2.24E-02
79	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	2.32E-02
80	GO:0008422: beta-glucosidase activity	2.64E-02
81	GO:0004364: glutathione transferase activity	2.88E-02
82	GO:0051537: 2 iron, 2 sulfur cluster binding	3.14E-02
83	GO:0015293: symporter activity	3.23E-02
84	GO:0051287: NAD binding	3.40E-02
85	GO:0003690: double-stranded DNA binding	3.76E-02
86	GO:0004650: polygalacturonase activity	4.42E-02
87	GO:0016874: ligase activity	4.52E-02
88	GO:0016746: transferase activity, transferring acyl groups	4.81E-02
89	GO:0005515: protein binding	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0005765: lysosomal membrane	2.34E-04
2	GO:0000139: Golgi membrane	2.39E-04
3	GO:0005794: Golgi apparatus	2.90E-04
4	GO:0033178: proton-transporting two-sector ATPase complex, catalytic domain	3.11E-04
5	GO:0042406: extrinsic component of endoplasmic reticulum membrane	5.13E-04
6	GO:0031225: anchored component of membrane	1.40E-03
7	GO:0016021: integral component of membrane	2.13E-03
8	GO:0005753: mitochondrial proton-transporting ATP synthase complex	6.14E-03
9	GO:0030076: light-harvesting complex	6.14E-03
10	GO:0005886: plasma membrane	7.91E-03
11	GO:0000790: nuclear chromatin	1.03E-02
12	GO:0009941: chloroplast envelope	1.13E-02
13	GO:0009536: plastid	1.20E-02
14	GO:0009522: photosystem I	1.21E-02
15	GO:0009505: plant-type cell wall	1.24E-02
16	GO:0009523: photosystem II	1.27E-02
17	GO:0009506: plasmodesma	1.41E-02
18	GO:0046658: anchored component of plasma membrane	1.52E-02
19	GO:0005667: transcription factor complex	1.88E-02
20	GO:0009707: chloroplast outer membrane	2.09E-02
21	GO:0000786: nucleosome	2.40E-02
22	GO:0005802: trans-Golgi network	2.47E-02
23	GO:0005819: spindle	2.64E-02
24	GO:0031902: late endosome membrane	2.80E-02
25	GO:0005743: mitochondrial inner membrane	3.03E-02
26	GO:0009507: chloroplast	3.16E-02
27	GO:0043231: intracellular membrane-bounded organelle	3.59E-02
28	GO:0016020: membrane	4.15E-02