co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G59820

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000188: inactivation of MAPK activity	0.00E+00
2	GO:0016236: macroautophagy	0.00E+00
3	GO:0042908: xenobiotic transport	0.00E+00
4	GO:0045185: maintenance of protein location	0.00E+00
5	GO:0009448: gamma-aminobutyric acid metabolic process	0.00E+00
6	GO:0007160: cell-matrix adhesion	0.00E+00
7	GO:0006105: succinate metabolic process	0.00E+00
8	GO:2001253: regulation of histone H3-K36 trimethylation	0.00E+00
9	GO:0046109: uridine biosynthetic process	0.00E+00
10	GO:0019484: beta-alanine catabolic process	0.00E+00
11	GO:0035278: miRNA mediated inhibition of translation	0.00E+00
12	GO:0019481: L-alanine catabolic process, by transamination	0.00E+00
13	GO:0010793: regulation of mRNA export from nucleus	0.00E+00
14	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
15	GO:0046686: response to cadmium ion	3.24E-07
16	GO:0098702: adenine import across plasma membrane	1.10E-04
17	GO:0035266: meristem growth	1.10E-04
18	GO:0098710: guanine import across plasma membrane	1.10E-04
19	GO:0009450: gamma-aminobutyric acid catabolic process	1.10E-04
20	GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway	1.10E-04
21	GO:0055047: generative cell mitosis	1.10E-04
22	GO:0007292: female gamete generation	1.10E-04
23	GO:0030242: pexophagy	1.10E-04
24	GO:1990641: response to iron ion starvation	1.10E-04
25	GO:0000303: response to superoxide	1.10E-04
26	GO:0035344: hypoxanthine transport	1.10E-04
27	GO:1902418: (+)-abscisic acid D-glucopyranosyl ester transmembrane transport	1.10E-04
28	GO:0009865: pollen tube adhesion	1.10E-04
29	GO:0006540: glutamate decarboxylation to succinate	1.10E-04
30	GO:0010265: SCF complex assembly	1.10E-04
31	GO:0098721: uracil import across plasma membrane	1.10E-04
32	GO:0006468: protein phosphorylation	2.00E-04
33	GO:0010033: response to organic substance	2.57E-04
34	GO:0050684: regulation of mRNA processing	2.57E-04
35	GO:0050994: regulation of lipid catabolic process	2.57E-04
36	GO:0007584: response to nutrient	2.57E-04
37	GO:0051788: response to misfolded protein	2.57E-04
38	GO:0006101: citrate metabolic process	2.57E-04
39	GO:0051258: protein polymerization	2.57E-04
40	GO:0060919: auxin influx	2.57E-04
41	GO:0046488: phosphatidylinositol metabolic process	2.57E-04
42	GO:0042325: regulation of phosphorylation	2.57E-04
43	GO:2000377: regulation of reactive oxygen species metabolic process	3.65E-04
44	GO:0060968: regulation of gene silencing	4.25E-04
45	GO:1900055: regulation of leaf senescence	4.25E-04
46	GO:0032784: regulation of DNA-templated transcription, elongation	4.25E-04
47	GO:0010359: regulation of anion channel activity	4.25E-04
48	GO:0061158: 3'-UTR-mediated mRNA destabilization	4.25E-04
49	GO:0006096: glycolytic process	4.95E-04
50	GO:0046777: protein autophosphorylation	5.06E-04
51	GO:0048367: shoot system development	5.16E-04
52	GO:0006020: inositol metabolic process	6.10E-04
53	GO:2001289: lipid X metabolic process	6.10E-04
54	GO:1901000: regulation of response to salt stress	6.10E-04
55	GO:0070301: cellular response to hydrogen peroxide	6.10E-04
56	GO:0043481: anthocyanin accumulation in tissues in response to UV light	6.10E-04
57	GO:0006809: nitric oxide biosynthetic process	6.10E-04
58	GO:0009052: pentose-phosphate shunt, non-oxidative branch	6.10E-04
59	GO:0015700: arsenite transport	6.10E-04
60	GO:0006542: glutamine biosynthetic process	8.10E-04
61	GO:0033320: UDP-D-xylose biosynthetic process	8.10E-04
62	GO:0006536: glutamate metabolic process	8.10E-04
63	GO:0010107: potassium ion import	8.10E-04
64	GO:0045324: late endosome to vacuole transport	8.10E-04
65	GO:0006623: protein targeting to vacuole	8.23E-04
66	GO:0048364: root development	8.78E-04
67	GO:0009630: gravitropism	9.34E-04
68	GO:0006097: glyoxylate cycle	1.02E-03
69	GO:0010225: response to UV-C	1.02E-03
70	GO:0048578: positive regulation of long-day photoperiodism, flowering	1.02E-03
71	GO:0048015: phosphatidylinositol-mediated signaling	1.02E-03
72	GO:0048827: phyllome development	1.25E-03
73	GO:0048232: male gamete generation	1.25E-03
74	GO:0043248: proteasome assembly	1.25E-03
75	GO:0042732: D-xylose metabolic process	1.25E-03
76	GO:0010358: leaf shaping	1.25E-03
77	GO:0010315: auxin efflux	1.25E-03
78	GO:1902456: regulation of stomatal opening	1.25E-03
79	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.25E-03
80	GO:0009816: defense response to bacterium, incompatible interaction	1.32E-03
81	GO:0048280: vesicle fusion with Golgi apparatus	1.49E-03
82	GO:0010311: lateral root formation	1.69E-03
83	GO:0006368: transcription elongation from RNA polymerase II promoter	1.75E-03
84	GO:0046470: phosphatidylcholine metabolic process	1.75E-03
85	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.75E-03
86	GO:0006499: N-terminal protein myristoylation	1.78E-03
87	GO:0010119: regulation of stomatal movement	1.86E-03
88	GO:0006102: isocitrate metabolic process	2.03E-03
89	GO:0052543: callose deposition in cell wall	2.03E-03
90	GO:0009819: drought recovery	2.03E-03
91	GO:0006605: protein targeting	2.03E-03
92	GO:0010078: maintenance of root meristem identity	2.03E-03
93	GO:0009867: jasmonic acid mediated signaling pathway	2.04E-03
94	GO:0045087: innate immune response	2.04E-03
95	GO:0006002: fructose 6-phosphate metabolic process	2.32E-03
96	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	2.32E-03
97	GO:0009827: plant-type cell wall modification	2.32E-03
98	GO:0048574: long-day photoperiodism, flowering	2.32E-03
99	GO:0006970: response to osmotic stress	2.34E-03
100	GO:0046685: response to arsenic-containing substance	2.62E-03
101	GO:0009051: pentose-phosphate shunt, oxidative branch	2.62E-03
102	GO:0048589: developmental growth	2.62E-03
103	GO:0048829: root cap development	3.25E-03
104	GO:0006896: Golgi to vacuole transport	3.25E-03
105	GO:0009846: pollen germination	3.27E-03
106	GO:0048765: root hair cell differentiation	3.59E-03
107	GO:0010015: root morphogenesis	3.59E-03
108	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	3.93E-03
109	GO:0006790: sulfur compound metabolic process	3.93E-03
110	GO:0012501: programmed cell death	3.93E-03
111	GO:0055046: microgametogenesis	4.30E-03
112	GO:0010102: lateral root morphogenesis	4.30E-03
113	GO:0006006: glucose metabolic process	4.30E-03
114	GO:0010540: basipetal auxin transport	4.66E-03
115	GO:0006541: glutamine metabolic process	4.66E-03
116	GO:0009933: meristem structural organization	4.66E-03
117	GO:0046854: phosphatidylinositol phosphorylation	5.04E-03
118	GO:0009225: nucleotide-sugar metabolic process	5.04E-03
119	GO:0005985: sucrose metabolic process	5.04E-03
120	GO:0090351: seedling development	5.04E-03
121	GO:0018105: peptidyl-serine phosphorylation	5.13E-03
122	GO:0009873: ethylene-activated signaling pathway	6.32E-03
123	GO:0080092: regulation of pollen tube growth	7.11E-03
124	GO:0030433: ubiquitin-dependent ERAD pathway	7.11E-03
125	GO:0009561: megagametogenesis	8.00E-03
126	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	8.46E-03
127	GO:0042147: retrograde transport, endosome to Golgi	8.46E-03
128	GO:0010087: phloem or xylem histogenesis	8.93E-03
129	GO:0010118: stomatal movement	8.93E-03
130	GO:0042335: cuticle development	8.93E-03
131	GO:0008360: regulation of cell shape	9.41E-03
132	GO:0010154: fruit development	9.41E-03
133	GO:0042752: regulation of circadian rhythm	9.91E-03
134	GO:0035556: intracellular signal transduction	1.01E-02
135	GO:0009556: microsporogenesis	1.04E-02
136	GO:0010183: pollen tube guidance	1.04E-02
137	GO:0010193: response to ozone	1.09E-02
138	GO:0006891: intra-Golgi vesicle-mediated transport	1.09E-02
139	GO:0009651: response to salt stress	1.11E-02
140	GO:0016032: viral process	1.14E-02
141	GO:0006914: autophagy	1.25E-02
142	GO:0051607: defense response to virus	1.36E-02
143	GO:0016579: protein deubiquitination	1.36E-02
144	GO:0006511: ubiquitin-dependent protein catabolic process	1.40E-02
145	GO:0001666: response to hypoxia	1.42E-02
146	GO:0010029: regulation of seed germination	1.47E-02
147	GO:0042128: nitrate assimilation	1.53E-02
148	GO:0048366: leaf development	1.57E-02
149	GO:0006888: ER to Golgi vesicle-mediated transport	1.59E-02
150	GO:0016311: dephosphorylation	1.65E-02
151	GO:0030244: cellulose biosynthetic process	1.71E-02
152	GO:0048767: root hair elongation	1.77E-02
153	GO:0006811: ion transport	1.83E-02
154	GO:0009631: cold acclimation	1.89E-02
155	GO:0006099: tricarboxylic acid cycle	2.09E-02
156	GO:0009414: response to water deprivation	2.25E-02
157	GO:0006631: fatty acid metabolic process	2.29E-02
158	GO:0006979: response to oxidative stress	2.34E-02
159	GO:0016042: lipid catabolic process	2.38E-02
160	GO:0009926: auxin polar transport	2.42E-02
161	GO:0008283: cell proliferation	2.42E-02
162	GO:0009408: response to heat	2.45E-02
163	GO:0009644: response to high light intensity	2.56E-02
164	GO:0009965: leaf morphogenesis	2.63E-02
165	GO:0006855: drug transmembrane transport	2.70E-02
166	GO:0031347: regulation of defense response	2.77E-02
167	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	2.77E-02
168	GO:0009585: red, far-red light phototransduction	2.99E-02
169	GO:0010224: response to UV-B	3.07E-02
170	GO:0006417: regulation of translation	3.22E-02
171	GO:0009734: auxin-activated signaling pathway	3.44E-02
172	GO:0009742: brassinosteroid mediated signaling pathway	4.01E-02
173	GO:0009738: abscisic acid-activated signaling pathway	4.19E-02
174	GO:0009555: pollen development	4.33E-02
175	GO:0009845: seed germination	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0016504: peptidase activator activity	0.00E+00
2	GO:0017017: MAP kinase tyrosine/serine/threonine phosphatase activity	0.00E+00
3	GO:0070577: lysine-acetylated histone binding	0.00E+00
4	GO:0016312: inositol bisphosphate phosphatase activity	0.00E+00
5	GO:0034387: 4-aminobutyrate:pyruvate transaminase activity	0.00E+00
6	GO:0005524: ATP binding	4.61E-08
7	GO:0004674: protein serine/threonine kinase activity	1.28E-07
8	GO:0005496: steroid binding	1.75E-05
9	GO:0016301: kinase activity	6.80E-05
10	GO:1902417: (+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity	1.10E-04
11	GO:0015208: guanine transmembrane transporter activity	1.10E-04
12	GO:0015294: solute:cation symporter activity	1.10E-04
13	GO:0015446: ATPase-coupled arsenite transmembrane transporter activity	1.10E-04
14	GO:0003867: 4-aminobutyrate transaminase activity	1.10E-04
15	GO:0071992: phytochelatin transmembrane transporter activity	1.10E-04
16	GO:0015207: adenine transmembrane transporter activity	1.10E-04
17	GO:0019707: protein-cysteine S-acyltransferase activity	1.10E-04
18	GO:0030955: potassium ion binding	1.24E-04
19	GO:0004743: pyruvate kinase activity	1.24E-04
20	GO:0008559: xenobiotic-transporting ATPase activity	1.73E-04
21	GO:0003994: aconitate hydratase activity	2.57E-04
22	GO:0015036: disulfide oxidoreductase activity	2.57E-04
23	GO:0005047: signal recognition particle binding	4.25E-04
24	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	4.25E-04
25	GO:0004751: ribose-5-phosphate isomerase activity	4.25E-04
26	GO:0004383: guanylate cyclase activity	4.25E-04
27	GO:0016805: dipeptidase activity	4.25E-04
28	GO:0001653: peptide receptor activity	6.10E-04
29	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	6.10E-04
30	GO:0004345: glucose-6-phosphate dehydrogenase activity	8.10E-04
31	GO:0015210: uracil transmembrane transporter activity	8.10E-04
32	GO:0010328: auxin influx transmembrane transporter activity	8.10E-04
33	GO:0070628: proteasome binding	8.10E-04
34	GO:0004356: glutamate-ammonia ligase activity	1.02E-03
35	GO:0005546: phosphatidylinositol-4,5-bisphosphate binding	1.02E-03
36	GO:0048040: UDP-glucuronate decarboxylase activity	1.25E-03
37	GO:0042578: phosphoric ester hydrolase activity	1.25E-03
38	GO:0036402: proteasome-activating ATPase activity	1.25E-03
39	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.39E-03
40	GO:0004683: calmodulin-dependent protein kinase activity	1.46E-03
41	GO:0070403: NAD+ binding	1.49E-03
42	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.49E-03
43	GO:0003950: NAD+ ADP-ribosyltransferase activity	1.49E-03
44	GO:0004012: phospholipid-translocating ATPase activity	1.49E-03
45	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.66E-03
46	GO:0008235: metalloexopeptidase activity	1.75E-03
47	GO:0003872: 6-phosphofructokinase activity	1.75E-03
48	GO:0004620: phospholipase activity	1.75E-03
49	GO:0004714: transmembrane receptor protein tyrosine kinase activity	2.03E-03
50	GO:0000287: magnesium ion binding	2.08E-03
51	GO:0003843: 1,3-beta-D-glucan synthase activity	2.32E-03
52	GO:0004630: phospholipase D activity	2.32E-03
53	GO:0005267: potassium channel activity	2.32E-03
54	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	2.32E-03
55	GO:0004177: aminopeptidase activity	3.59E-03
56	GO:0005516: calmodulin binding	3.63E-03
57	GO:0019888: protein phosphatase regulator activity	4.30E-03
58	GO:0005388: calcium-transporting ATPase activity	4.30E-03
59	GO:0010329: auxin efflux transmembrane transporter activity	4.30E-03
60	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	4.30E-03
61	GO:0017025: TBP-class protein binding	5.04E-03
62	GO:0004725: protein tyrosine phosphatase activity	5.44E-03
63	GO:0043130: ubiquitin binding	5.84E-03
64	GO:0019706: protein-cysteine S-palmitoyltransferase activity	6.67E-03
65	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	6.67E-03
66	GO:0004176: ATP-dependent peptidase activity	6.67E-03
67	GO:0016887: ATPase activity	7.97E-03
68	GO:0003727: single-stranded RNA binding	8.00E-03
69	GO:0004872: receptor activity	1.04E-02
70	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.09E-02
71	GO:0008237: metallopeptidase activity	1.30E-02
72	GO:0061630: ubiquitin protein ligase activity	1.74E-02
73	GO:0005096: GTPase activator activity	1.77E-02
74	GO:0004222: metalloendopeptidase activity	1.83E-02
75	GO:0030145: manganese ion binding	1.89E-02
76	GO:0050897: cobalt ion binding	1.89E-02
77	GO:0005515: protein binding	2.01E-02
78	GO:0005509: calcium ion binding	2.09E-02
79	GO:0000149: SNARE binding	2.15E-02
80	GO:0050661: NADP binding	2.22E-02
81	GO:0051539: 4 iron, 4 sulfur cluster binding	2.22E-02
82	GO:0005484: SNAP receptor activity	2.42E-02
83	GO:0003924: GTPase activity	2.45E-02
84	GO:0005215: transporter activity	2.62E-02
85	GO:0015171: amino acid transmembrane transporter activity	3.22E-02
86	GO:0031625: ubiquitin protein ligase binding	3.22E-02
87	GO:0045735: nutrient reservoir activity	3.37E-02
88	GO:0004842: ubiquitin-protein transferase activity	3.46E-02
89	GO:0022857: transmembrane transporter activity	3.69E-02
90	GO:0004672: protein kinase activity	3.73E-02
91	GO:0003729: mRNA binding	3.79E-02
92	GO:0030170: pyridoxal phosphate binding	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0070449: elongin complex	0.00E+00
2	GO:0005785: signal recognition particle receptor complex	0.00E+00
3	GO:0008305: integrin complex	0.00E+00
4	GO:0071561: nucleus-vacuole junction	0.00E+00
5	GO:0005886: plasma membrane	1.31E-05
6	GO:0005770: late endosome	3.77E-05
7	GO:0005829: cytosol	6.15E-05
8	GO:0016021: integral component of membrane	6.59E-05
9	GO:0034271: phosphatidylinositol 3-kinase complex, class III, type I	1.10E-04
10	GO:0034272: phosphatidylinositol 3-kinase complex, class III, type II	1.10E-04
11	GO:0000138: Golgi trans cisterna	1.10E-04
12	GO:0031314: extrinsic component of mitochondrial inner membrane	2.57E-04
13	GO:0031461: cullin-RING ubiquitin ligase complex	6.10E-04
14	GO:0005945: 6-phosphofructokinase complex	1.02E-03
15	GO:0030140: trans-Golgi network transport vesicle	1.25E-03
16	GO:0016363: nuclear matrix	1.49E-03
17	GO:0031597: cytosolic proteasome complex	1.49E-03
18	GO:0000151: ubiquitin ligase complex	1.61E-03
19	GO:0000794: condensed nuclear chromosome	1.75E-03
20	GO:0031595: nuclear proteasome complex	1.75E-03
21	GO:0000325: plant-type vacuole	1.86E-03
22	GO:0012507: ER to Golgi transport vesicle membrane	2.03E-03
23	GO:0000148: 1,3-beta-D-glucan synthase complex	2.32E-03
24	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	2.32E-03
25	GO:0031902: late endosome membrane	2.41E-03
26	GO:0008540: proteasome regulatory particle, base subcomplex	2.93E-03
27	GO:0005774: vacuolar membrane	3.54E-03
28	GO:0090404: pollen tube tip	3.59E-03
29	GO:0005802: trans-Golgi network	3.99E-03
30	GO:0005769: early endosome	5.44E-03
31	GO:0005839: proteasome core complex	6.67E-03
32	GO:0005773: vacuole	8.18E-03
33	GO:0030136: clathrin-coated vesicle	8.46E-03
34	GO:0005737: cytoplasm	1.12E-02
35	GO:0005783: endoplasmic reticulum	1.39E-02
36	GO:0000932: P-body	1.42E-02
37	GO:0005794: Golgi apparatus	1.44E-02
38	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.46E-02
39	GO:0005643: nuclear pore	1.71E-02
40	GO:0005819: spindle	2.15E-02
41	GO:0031201: SNARE complex	2.29E-02
42	GO:0031966: mitochondrial membrane	2.85E-02
43	GO:0000502: proteasome complex	2.99E-02
44	GO:0005789: endoplasmic reticulum membrane	3.91E-02
45	GO:0009506: plasmodesma	4.56E-02
46	GO:0009524: phragmoplast	4.69E-02