GO Enrichment Analysis of Co-expressed Genes with
AT1G56670
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 2 | GO:0090470: shoot organ boundary specification | 0.00E+00 |
| 3 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 4 | GO:0042335: cuticle development | 2.15E-05 |
| 5 | GO:0070509: calcium ion import | 8.96E-05 |
| 6 | GO:0007263: nitric oxide mediated signal transduction | 8.96E-05 |
| 7 | GO:0042371: vitamin K biosynthetic process | 8.96E-05 |
| 8 | GO:0048829: root cap development | 1.10E-04 |
| 9 | GO:0009773: photosynthetic electron transport in photosystem I | 1.29E-04 |
| 10 | GO:0010115: regulation of abscisic acid biosynthetic process | 2.12E-04 |
| 11 | GO:0001736: establishment of planar polarity | 2.12E-04 |
| 12 | GO:0010024: phytochromobilin biosynthetic process | 2.12E-04 |
| 13 | GO:0010270: photosystem II oxygen evolving complex assembly | 2.12E-04 |
| 14 | GO:0009768: photosynthesis, light harvesting in photosystem I | 3.07E-04 |
| 15 | GO:0003333: amino acid transmembrane transport | 3.38E-04 |
| 16 | GO:0010581: regulation of starch biosynthetic process | 3.54E-04 |
| 17 | GO:0006788: heme oxidation | 3.54E-04 |
| 18 | GO:0006168: adenine salvage | 5.10E-04 |
| 19 | GO:2001141: regulation of RNA biosynthetic process | 5.10E-04 |
| 20 | GO:0010371: regulation of gibberellin biosynthetic process | 5.10E-04 |
| 21 | GO:0006166: purine ribonucleoside salvage | 5.10E-04 |
| 22 | GO:0010088: phloem development | 5.10E-04 |
| 23 | GO:0042391: regulation of membrane potential | 5.13E-04 |
| 24 | GO:0006183: GTP biosynthetic process | 6.78E-04 |
| 25 | GO:0006564: L-serine biosynthetic process | 8.59E-04 |
| 26 | GO:0044209: AMP salvage | 8.59E-04 |
| 27 | GO:0035435: phosphate ion transmembrane transport | 1.05E-03 |
| 28 | GO:0009913: epidermal cell differentiation | 1.05E-03 |
| 29 | GO:0006596: polyamine biosynthetic process | 1.05E-03 |
| 30 | GO:0006561: proline biosynthetic process | 1.05E-03 |
| 31 | GO:0048759: xylem vessel member cell differentiation | 1.05E-03 |
| 32 | GO:0010405: arabinogalactan protein metabolic process | 1.05E-03 |
| 33 | GO:0000470: maturation of LSU-rRNA | 1.05E-03 |
| 34 | GO:0006828: manganese ion transport | 1.05E-03 |
| 35 | GO:0018258: protein O-linked glycosylation via hydroxyproline | 1.05E-03 |
| 36 | GO:0018298: protein-chromophore linkage | 1.24E-03 |
| 37 | GO:0042372: phylloquinone biosynthetic process | 1.25E-03 |
| 38 | GO:0009645: response to low light intensity stimulus | 1.46E-03 |
| 39 | GO:0006400: tRNA modification | 1.46E-03 |
| 40 | GO:0009395: phospholipid catabolic process | 1.46E-03 |
| 41 | GO:0006865: amino acid transport | 1.49E-03 |
| 42 | GO:0009637: response to blue light | 1.56E-03 |
| 43 | GO:0048564: photosystem I assembly | 1.69E-03 |
| 44 | GO:0008610: lipid biosynthetic process | 1.69E-03 |
| 45 | GO:0019430: removal of superoxide radicals | 1.93E-03 |
| 46 | GO:0071482: cellular response to light stimulus | 1.93E-03 |
| 47 | GO:0010114: response to red light | 2.00E-03 |
| 48 | GO:0009926: auxin polar transport | 2.00E-03 |
| 49 | GO:0034765: regulation of ion transmembrane transport | 2.18E-03 |
| 50 | GO:0009051: pentose-phosphate shunt, oxidative branch | 2.18E-03 |
| 51 | GO:0015979: photosynthesis | 2.33E-03 |
| 52 | GO:0042761: very long-chain fatty acid biosynthetic process | 2.43E-03 |
| 53 | GO:0010380: regulation of chlorophyll biosynthetic process | 2.43E-03 |
| 54 | GO:0009688: abscisic acid biosynthetic process | 2.70E-03 |
| 55 | GO:0043085: positive regulation of catalytic activity | 2.98E-03 |
| 56 | GO:0006352: DNA-templated transcription, initiation | 2.98E-03 |
| 57 | GO:0009750: response to fructose | 2.98E-03 |
| 58 | GO:0048765: root hair cell differentiation | 2.98E-03 |
| 59 | GO:0000038: very long-chain fatty acid metabolic process | 2.98E-03 |
| 60 | GO:0006816: calcium ion transport | 2.98E-03 |
| 61 | GO:0008285: negative regulation of cell proliferation | 2.98E-03 |
| 62 | GO:0016024: CDP-diacylglycerol biosynthetic process | 3.26E-03 |
| 63 | GO:0010628: positive regulation of gene expression | 3.56E-03 |
| 64 | GO:0006006: glucose metabolic process | 3.56E-03 |
| 65 | GO:0010143: cutin biosynthetic process | 3.86E-03 |
| 66 | GO:0010025: wax biosynthetic process | 4.50E-03 |
| 67 | GO:0007010: cytoskeleton organization | 4.83E-03 |
| 68 | GO:0009695: jasmonic acid biosynthetic process | 5.17E-03 |
| 69 | GO:0010073: meristem maintenance | 5.17E-03 |
| 70 | GO:0006418: tRNA aminoacylation for protein translation | 5.17E-03 |
| 71 | GO:0031408: oxylipin biosynthetic process | 5.52E-03 |
| 72 | GO:0030245: cellulose catabolic process | 5.87E-03 |
| 73 | GO:0010227: floral organ abscission | 6.23E-03 |
| 74 | GO:0019722: calcium-mediated signaling | 6.61E-03 |
| 75 | GO:0005975: carbohydrate metabolic process | 7.03E-03 |
| 76 | GO:0000413: protein peptidyl-prolyl isomerization | 7.37E-03 |
| 77 | GO:0010087: phloem or xylem histogenesis | 7.37E-03 |
| 78 | GO:0009958: positive gravitropism | 7.77E-03 |
| 79 | GO:0010182: sugar mediated signaling pathway | 7.77E-03 |
| 80 | GO:0007267: cell-cell signaling | 1.07E-02 |
| 81 | GO:0071805: potassium ion transmembrane transport | 1.07E-02 |
| 82 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 1.30E-02 |
| 83 | GO:0048481: plant ovule development | 1.41E-02 |
| 84 | GO:0010311: lateral root formation | 1.46E-02 |
| 85 | GO:0000160: phosphorelay signal transduction system | 1.46E-02 |
| 86 | GO:0045454: cell redox homeostasis | 1.50E-02 |
| 87 | GO:0010218: response to far red light | 1.51E-02 |
| 88 | GO:0006869: lipid transport | 1.65E-02 |
| 89 | GO:0032259: methylation | 1.78E-02 |
| 90 | GO:0009408: response to heat | 1.86E-02 |
| 91 | GO:0006631: fatty acid metabolic process | 1.88E-02 |
| 92 | GO:0009640: photomorphogenesis | 1.99E-02 |
| 93 | GO:0009644: response to high light intensity | 2.10E-02 |
| 94 | GO:0008643: carbohydrate transport | 2.10E-02 |
| 95 | GO:0006855: drug transmembrane transport | 2.22E-02 |
| 96 | GO:0042538: hyperosmotic salinity response | 2.34E-02 |
| 97 | GO:0009409: response to cold | 2.39E-02 |
| 98 | GO:0009736: cytokinin-activated signaling pathway | 2.46E-02 |
| 99 | GO:0009734: auxin-activated signaling pathway | 2.62E-02 |
| 100 | GO:0009626: plant-type hypersensitive response | 2.90E-02 |
| 101 | GO:0009624: response to nematode | 3.16E-02 |
| 102 | GO:0018105: peptidyl-serine phosphorylation | 3.23E-02 |
| 103 | GO:0009416: response to light stimulus | 3.29E-02 |
| 104 | GO:0042744: hydrogen peroxide catabolic process | 4.07E-02 |
| 105 | GO:0006457: protein folding | 4.25E-02 |
| 106 | GO:0006633: fatty acid biosynthetic process | 4.36E-02 |
| 107 | GO:0010228: vegetative to reproductive phase transition of meristem | 4.82E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 2 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 3 | GO:0019146: arabinose-5-phosphate isomerase activity | 0.00E+00 |
| 4 | GO:0005222: intracellular cAMP activated cation channel activity | 0.00E+00 |
| 5 | GO:0010301: xanthoxin dehydrogenase activity | 0.00E+00 |
| 6 | GO:0010487: thermospermine synthase activity | 0.00E+00 |
| 7 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 8 | GO:0010328: auxin influx transmembrane transporter activity | 7.45E-06 |
| 9 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 2.69E-05 |
| 10 | GO:0005242: inward rectifier potassium channel activity | 2.69E-05 |
| 11 | GO:0004321: fatty-acyl-CoA synthase activity | 8.96E-05 |
| 12 | GO:0016768: spermine synthase activity | 8.96E-05 |
| 13 | GO:0005221: intracellular cyclic nucleotide activated cation channel activity | 8.96E-05 |
| 14 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 8.96E-05 |
| 15 | GO:0004565: beta-galactosidase activity | 1.73E-04 |
| 16 | GO:0004617: phosphoglycerate dehydrogenase activity | 2.12E-04 |
| 17 | GO:0003938: IMP dehydrogenase activity | 2.12E-04 |
| 18 | GO:0031409: pigment binding | 2.49E-04 |
| 19 | GO:0070330: aromatase activity | 3.54E-04 |
| 20 | GO:0002161: aminoacyl-tRNA editing activity | 3.54E-04 |
| 21 | GO:0003999: adenine phosphoribosyltransferase activity | 5.10E-04 |
| 22 | GO:0001872: (1->3)-beta-D-glucan binding | 5.10E-04 |
| 23 | GO:0030551: cyclic nucleotide binding | 5.13E-04 |
| 24 | GO:0004392: heme oxygenase (decyclizing) activity | 6.78E-04 |
| 25 | GO:0004659: prenyltransferase activity | 6.78E-04 |
| 26 | GO:0001053: plastid sigma factor activity | 6.78E-04 |
| 27 | GO:0010011: auxin binding | 6.78E-04 |
| 28 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 6.78E-04 |
| 29 | GO:0016987: sigma factor activity | 6.78E-04 |
| 30 | GO:0018685: alkane 1-monooxygenase activity | 8.59E-04 |
| 31 | GO:0016168: chlorophyll binding | 1.01E-03 |
| 32 | GO:0016208: AMP binding | 1.05E-03 |
| 33 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 1.05E-03 |
| 34 | GO:1990714: hydroxyproline O-galactosyltransferase activity | 1.05E-03 |
| 35 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 1.05E-03 |
| 36 | GO:0051920: peroxiredoxin activity | 1.25E-03 |
| 37 | GO:0005261: cation channel activity | 1.25E-03 |
| 38 | GO:0016788: hydrolase activity, acting on ester bonds | 1.54E-03 |
| 39 | GO:0016209: antioxidant activity | 1.69E-03 |
| 40 | GO:0004033: aldo-keto reductase (NADP) activity | 1.69E-03 |
| 41 | GO:0016207: 4-coumarate-CoA ligase activity | 2.18E-03 |
| 42 | GO:0015293: symporter activity | 2.24E-03 |
| 43 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.32E-03 |
| 44 | GO:0005384: manganese ion transmembrane transporter activity | 2.43E-03 |
| 45 | GO:0008047: enzyme activator activity | 2.70E-03 |
| 46 | GO:0015171: amino acid transmembrane transporter activity | 2.96E-03 |
| 47 | GO:0047372: acylglycerol lipase activity | 2.98E-03 |
| 48 | GO:0015386: potassium:proton antiporter activity | 2.98E-03 |
| 49 | GO:0000049: tRNA binding | 3.26E-03 |
| 50 | GO:0004022: alcohol dehydrogenase (NAD) activity | 3.56E-03 |
| 51 | GO:0015095: magnesium ion transmembrane transporter activity | 3.56E-03 |
| 52 | GO:0031072: heat shock protein binding | 3.56E-03 |
| 53 | GO:0005262: calcium channel activity | 3.56E-03 |
| 54 | GO:0015114: phosphate ion transmembrane transporter activity | 3.56E-03 |
| 55 | GO:0016746: transferase activity, transferring acyl groups | 3.90E-03 |
| 56 | GO:0030552: cAMP binding | 4.18E-03 |
| 57 | GO:0030553: cGMP binding | 4.18E-03 |
| 58 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 4.50E-03 |
| 59 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 4.50E-03 |
| 60 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 4.50E-03 |
| 61 | GO:0005528: FK506 binding | 4.83E-03 |
| 62 | GO:0005216: ion channel activity | 5.17E-03 |
| 63 | GO:0015079: potassium ion transmembrane transporter activity | 5.17E-03 |
| 64 | GO:0008810: cellulase activity | 6.23E-03 |
| 65 | GO:0004812: aminoacyl-tRNA ligase activity | 6.99E-03 |
| 66 | GO:0005249: voltage-gated potassium channel activity | 7.37E-03 |
| 67 | GO:0004791: thioredoxin-disulfide reductase activity | 8.17E-03 |
| 68 | GO:0030246: carbohydrate binding | 9.72E-03 |
| 69 | GO:0008168: methyltransferase activity | 9.73E-03 |
| 70 | GO:0000156: phosphorelay response regulator activity | 9.85E-03 |
| 71 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 9.85E-03 |
| 72 | GO:0016791: phosphatase activity | 1.03E-02 |
| 73 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 1.07E-02 |
| 74 | GO:0005516: calmodulin binding | 1.12E-02 |
| 75 | GO:0016597: amino acid binding | 1.12E-02 |
| 76 | GO:0009931: calcium-dependent protein serine/threonine kinase activity | 1.26E-02 |
| 77 | GO:0030247: polysaccharide binding | 1.31E-02 |
| 78 | GO:0004683: calmodulin-dependent protein kinase activity | 1.31E-02 |
| 79 | GO:0015238: drug transmembrane transporter activity | 1.46E-02 |
| 80 | GO:0005509: calcium ion binding | 1.47E-02 |
| 81 | GO:0042803: protein homodimerization activity | 1.58E-02 |
| 82 | GO:0004871: signal transducer activity | 1.58E-02 |
| 83 | GO:0003993: acid phosphatase activity | 1.72E-02 |
| 84 | GO:0051539: 4 iron, 4 sulfur cluster binding | 1.82E-02 |
| 85 | GO:0050661: NADP binding | 1.82E-02 |
| 86 | GO:0005215: transporter activity | 1.85E-02 |
| 87 | GO:0043621: protein self-association | 2.10E-02 |
| 88 | GO:0051287: NAD binding | 2.28E-02 |
| 89 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.46E-02 |
| 90 | GO:0008289: lipid binding | 2.58E-02 |
| 91 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 2.84E-02 |
| 92 | GO:0016874: ligase activity | 3.03E-02 |
| 93 | GO:0030599: pectinesterase activity | 3.03E-02 |
| 94 | GO:0022857: transmembrane transporter activity | 3.03E-02 |
| 95 | GO:0051082: unfolded protein binding | 3.16E-02 |
| 96 | GO:0016758: transferase activity, transferring hexosyl groups | 3.64E-02 |
| 97 | GO:0019843: rRNA binding | 3.71E-02 |
| 98 | GO:0046872: metal ion binding | 3.74E-02 |
| 99 | GO:0016740: transferase activity | 4.01E-02 |
| 100 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 4.33E-02 |
| 101 | GO:0015297: antiporter activity | 4.51E-02 |
| 102 | GO:0008017: microtubule binding | 4.82E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 8.32E-08 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 4.49E-06 |
| 3 | GO:0009570: chloroplast stroma | 4.19E-05 |
| 4 | GO:0009941: chloroplast envelope | 6.71E-05 |
| 5 | GO:0009782: photosystem I antenna complex | 8.96E-05 |
| 6 | GO:0031977: thylakoid lumen | 1.66E-04 |
| 7 | GO:0005886: plasma membrane | 1.86E-04 |
| 8 | GO:0030076: light-harvesting complex | 2.22E-04 |
| 9 | GO:0016020: membrane | 2.44E-04 |
| 10 | GO:0009543: chloroplast thylakoid lumen | 5.88E-04 |
| 11 | GO:0046658: anchored component of plasma membrane | 1.24E-03 |
| 12 | GO:0009986: cell surface | 1.46E-03 |
| 13 | GO:0005777: peroxisome | 1.58E-03 |
| 14 | GO:0031969: chloroplast membrane | 1.97E-03 |
| 15 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.18E-03 |
| 16 | GO:0048046: apoplast | 2.24E-03 |
| 17 | GO:0030095: chloroplast photosystem II | 3.86E-03 |
| 18 | GO:0010287: plastoglobule | 4.49E-03 |
| 19 | GO:0009654: photosystem II oxygen evolving complex | 5.17E-03 |
| 20 | GO:0009522: photosystem I | 8.17E-03 |
| 21 | GO:0019898: extrinsic component of membrane | 8.58E-03 |
| 22 | GO:0005778: peroxisomal membrane | 1.07E-02 |
| 23 | GO:0010319: stromule | 1.07E-02 |
| 24 | GO:0031225: anchored component of membrane | 1.17E-02 |
| 25 | GO:0009505: plant-type cell wall | 2.17E-02 |
| 26 | GO:0005783: endoplasmic reticulum | 2.40E-02 |
| 27 | GO:0005887: integral component of plasma membrane | 2.52E-02 |
| 28 | GO:0009506: plasmodesma | 2.73E-02 |
| 29 | GO:0009579: thylakoid | 3.93E-02 |
| 30 | GO:0009534: chloroplast thylakoid | 3.97E-02 |