co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G56340

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071433: cell wall repair	0.00E+00
2	GO:0000740: nuclear membrane fusion	0.00E+00
3	GO:0043462: regulation of ATPase activity	0.00E+00
4	GO:0071731: response to nitric oxide	0.00E+00
5	GO:0006457: protein folding	4.65E-17
6	GO:0009408: response to heat	3.94E-08
7	GO:0045041: protein import into mitochondrial intermembrane space	1.97E-07
8	GO:0046686: response to cadmium ion	1.18E-06
9	GO:0051085: chaperone mediated protein folding requiring cofactor	1.83E-06
10	GO:0051131: chaperone-mediated protein complex assembly	1.83E-06
11	GO:0061077: chaperone-mediated protein folding	3.92E-06
12	GO:0007005: mitochondrion organization	4.61E-06
13	GO:0009553: embryo sac development	1.01E-05
14	GO:0006458: 'de novo' protein folding	1.32E-05
15	GO:0016444: somatic cell DNA recombination	1.32E-05
16	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	1.32E-05
17	GO:0042026: protein refolding	1.32E-05
18	GO:0009651: response to salt stress	1.83E-05
19	GO:0030968: endoplasmic reticulum unfolded protein response	3.09E-05
20	GO:1990542: mitochondrial transmembrane transport	5.79E-05
21	GO:0000494: box C/D snoRNA 3'-end processing	5.79E-05
22	GO:1990258: histone glutamine methylation	5.79E-05
23	GO:0006412: translation	7.45E-05
24	GO:0006820: anion transport	7.94E-05
25	GO:0006626: protein targeting to mitochondrion	9.21E-05
26	GO:0034976: response to endoplasmic reticulum stress	1.35E-04
27	GO:0080181: lateral root branching	1.41E-04
28	GO:0010198: synergid death	1.41E-04
29	GO:0051258: protein polymerization	1.41E-04
30	GO:0006334: nucleosome assembly	1.87E-04
31	GO:0006954: inflammatory response	2.40E-04
32	GO:0002181: cytoplasmic translation	2.40E-04
33	GO:0015695: organic cation transport	2.40E-04
34	GO:0055074: calcium ion homeostasis	2.40E-04
35	GO:0010197: polar nucleus fusion	3.13E-04
36	GO:0015696: ammonium transport	3.49E-04
37	GO:0009558: embryo sac cellularization	3.49E-04
38	GO:0006986: response to unfolded protein	3.49E-04
39	GO:0072334: UDP-galactose transmembrane transport	3.49E-04
40	GO:0044205: 'de novo' UMP biosynthetic process	4.66E-04
41	GO:0072488: ammonium transmembrane transport	4.66E-04
42	GO:0046283: anthocyanin-containing compound metabolic process	5.92E-04
43	GO:0031167: rRNA methylation	5.92E-04
44	GO:0006544: glycine metabolic process	5.92E-04
45	GO:0006563: L-serine metabolic process	7.24E-04
46	GO:0010311: lateral root formation	7.51E-04
47	GO:0000724: double-strand break repair via homologous recombination	8.60E-04
48	GO:0009423: chorismate biosynthetic process	8.63E-04
49	GO:0050821: protein stabilization	1.16E-03
50	GO:0009793: embryo development ending in seed dormancy	1.27E-03
51	GO:0006526: arginine biosynthetic process	1.32E-03
52	GO:0010204: defense response signaling pathway, resistance gene-independent	1.32E-03
53	GO:0001510: RNA methylation	1.32E-03
54	GO:0006189: 'de novo' IMP biosynthetic process	1.48E-03
55	GO:0015780: nucleotide-sugar transport	1.48E-03
56	GO:0098656: anion transmembrane transport	1.48E-03
57	GO:0006364: rRNA processing	1.52E-03
58	GO:0090332: stomatal closure	1.65E-03
59	GO:0035999: tetrahydrofolate interconversion	1.65E-03
60	GO:0009073: aromatic amino acid family biosynthetic process	2.02E-03
61	GO:0006913: nucleocytoplasmic transport	2.02E-03
62	GO:0010075: regulation of meristem growth	2.41E-03
63	GO:0009934: regulation of meristem structural organization	2.62E-03
64	GO:0009555: pollen development	3.19E-03
65	GO:0000027: ribosomal large subunit assembly	3.26E-03
66	GO:0030150: protein import into mitochondrial matrix	3.26E-03
67	GO:0010187: negative regulation of seed germination	3.26E-03
68	GO:0015992: proton transport	3.72E-03
69	GO:0030433: ubiquitin-dependent ERAD pathway	3.95E-03
70	GO:0009294: DNA mediated transformation	4.20E-03
71	GO:0009306: protein secretion	4.44E-03
72	GO:0008033: tRNA processing	4.95E-03
73	GO:0000413: protein peptidyl-prolyl isomerization	4.95E-03
74	GO:0048868: pollen tube development	5.21E-03
75	GO:0042254: ribosome biogenesis	5.77E-03
76	GO:0080156: mitochondrial mRNA modification	6.02E-03
77	GO:0009567: double fertilization forming a zygote and endosperm	6.88E-03
78	GO:0010286: heat acclimation	7.18E-03
79	GO:0009911: positive regulation of flower development	7.78E-03
80	GO:0042742: defense response to bacterium	7.80E-03
81	GO:0009816: defense response to bacterium, incompatible interaction	8.08E-03
82	GO:0048573: photoperiodism, flowering	8.71E-03
83	GO:0006888: ER to Golgi vesicle-mediated transport	8.71E-03
84	GO:0016049: cell growth	9.03E-03
85	GO:0006811: ion transport	1.00E-02
86	GO:0048527: lateral root development	1.04E-02
87	GO:0015031: protein transport	1.06E-02
88	GO:0048364: root development	1.08E-02
89	GO:0009853: photorespiration	1.11E-02
90	GO:0006810: transport	1.27E-02
91	GO:0008283: cell proliferation	1.32E-02
92	GO:0006855: drug transmembrane transport	1.47E-02
93	GO:0006486: protein glycosylation	1.63E-02
94	GO:0009735: response to cytokinin	1.69E-02
95	GO:0009626: plant-type hypersensitive response	1.92E-02
96	GO:0016036: cellular response to phosphate starvation	2.94E-02
97	GO:0007623: circadian rhythm	3.09E-02
98	GO:0009617: response to bacterium	3.51E-02
99	GO:0009414: response to water deprivation	3.65E-02
100	GO:0009860: pollen tube growth	4.45E-02
101	GO:0009723: response to ethylene	4.68E-02
102	GO:0048366: leaf development	4.74E-02
103	GO:0080167: response to karrikin	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0052861: glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group	0.00E+00
2	GO:0004107: chorismate synthase activity	0.00E+00
3	GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity	0.00E+00
4	GO:0051082: unfolded protein binding	1.83E-22
5	GO:0003735: structural constituent of ribosome	2.31E-07
6	GO:0031072: heat shock protein binding	1.21E-06
7	GO:0005460: UDP-glucose transmembrane transporter activity	1.83E-06
8	GO:0005459: UDP-galactose transmembrane transporter activity	5.95E-06
9	GO:0015288: porin activity	2.41E-05
10	GO:0008308: voltage-gated anion channel activity	3.09E-05
11	GO:0003746: translation elongation factor activity	5.50E-05
12	GO:0004088: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity	5.79E-05
13	GO:1990259: histone-glutamine methyltransferase activity	5.79E-05
14	GO:0004638: phosphoribosylaminoimidazole carboxylase activity	5.79E-05
15	GO:0044183: protein binding involved in protein folding	6.78E-05
16	GO:0005507: copper ion binding	1.43E-04
17	GO:0008649: rRNA methyltransferase activity	2.40E-04
18	GO:0070180: large ribosomal subunit rRNA binding	2.40E-04
19	GO:0000030: mannosyltransferase activity	2.40E-04
20	GO:0005524: ATP binding	3.33E-04
21	GO:0017077: oxidative phosphorylation uncoupler activity	3.49E-04
22	GO:0004372: glycine hydroxymethyltransferase activity	5.92E-04
23	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	7.16E-04
24	GO:0008519: ammonium transmembrane transporter activity	7.24E-04
25	GO:0042393: histone binding	1.01E-03
26	GO:0030515: snoRNA binding	1.01E-03
27	GO:0008135: translation factor activity, RNA binding	1.32E-03
28	GO:0003924: GTPase activity	1.55E-03
29	GO:0004129: cytochrome-c oxidase activity	2.02E-03
30	GO:0015266: protein channel activity	2.41E-03
31	GO:0003729: mRNA binding	2.81E-03
32	GO:0051087: chaperone binding	3.49E-03
33	GO:0003756: protein disulfide isomerase activity	4.44E-03
34	GO:0030246: carbohydrate binding	4.64E-03
35	GO:0016853: isomerase activity	5.48E-03
36	GO:0010181: FMN binding	5.48E-03
37	GO:0005525: GTP binding	5.99E-03
38	GO:0005509: calcium ion binding	7.04E-03
39	GO:0016798: hydrolase activity, acting on glycosyl bonds	8.71E-03
40	GO:0015238: drug transmembrane transporter activity	9.69E-03
41	GO:0050897: cobalt ion binding	1.04E-02
42	GO:0003723: RNA binding	1.06E-02
43	GO:0003697: single-stranded DNA binding	1.11E-02
44	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.47E-02
45	GO:0016887: ATPase activity	1.61E-02
46	GO:0019843: rRNA binding	2.46E-02
47	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.51E-02
48	GO:0030170: pyridoxal phosphate binding	2.65E-02
49	GO:0015297: antiporter activity	2.99E-02
50	GO:0042802: identical protein binding	3.67E-02
51	GO:0003682: chromatin binding	4.39E-02
52	GO:0004497: monooxygenase activity	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0005774: vacuolar membrane	4.20E-12
2	GO:0005739: mitochondrion	3.07E-10
3	GO:0005788: endoplasmic reticulum lumen	7.29E-09
4	GO:0005730: nucleolus	1.16E-07
5	GO:0005783: endoplasmic reticulum	5.46E-07
6	GO:0005773: vacuole	1.44E-06
7	GO:0009506: plasmodesma	1.55E-06
8	GO:0022626: cytosolic ribosome	4.76E-06
9	GO:0046930: pore complex	3.09E-05
10	GO:0005742: mitochondrial outer membrane translocase complex	3.09E-05
11	GO:0005951: carbamoyl-phosphate synthase complex	5.79E-05
12	GO:0009507: chloroplast	7.56E-05
13	GO:0005829: cytosol	7.90E-05
14	GO:0030176: integral component of endoplasmic reticulum membrane	1.20E-04
15	GO:0022625: cytosolic large ribosomal subunit	1.20E-04
16	GO:0005741: mitochondrial outer membrane	1.87E-04
17	GO:0005840: ribosome	3.12E-04
18	GO:0005759: mitochondrial matrix	3.76E-04
19	GO:0005886: plasma membrane	4.62E-04
20	GO:0031428: box C/D snoRNP complex	7.24E-04
21	GO:0015934: large ribosomal subunit	8.23E-04
22	GO:0030173: integral component of Golgi membrane	8.63E-04
23	GO:0005762: mitochondrial large ribosomal subunit	8.63E-04
24	GO:0005743: mitochondrial inner membrane	1.41E-03
25	GO:0016020: membrane	1.44E-03
26	GO:0015030: Cajal body	1.65E-03
27	GO:0005747: mitochondrial respiratory chain complex I	1.85E-03
28	GO:0032040: small-subunit processome	2.21E-03
29	GO:0005789: endoplasmic reticulum membrane	2.92E-03
30	GO:0005758: mitochondrial intermembrane space	3.26E-03
31	GO:0005618: cell wall	3.26E-03
32	GO:0022627: cytosolic small ribosomal subunit	4.85E-03
33	GO:0016592: mediator complex	6.31E-03
34	GO:0009570: chloroplast stroma	7.84E-03
35	GO:0009536: plastid	1.01E-02
36	GO:0009505: plant-type cell wall	1.04E-02
37	GO:0005737: cytoplasm	1.25E-02