co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G56300

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009877: nodulation	0.00E+00
2	GO:0042906: xanthine transport	0.00E+00
3	GO:0010219: regulation of vernalization response	0.00E+00
4	GO:0012502: induction of programmed cell death	0.00E+00
5	GO:0010378: temperature compensation of the circadian clock	0.00E+00
6	GO:0030644: cellular chloride ion homeostasis	0.00E+00
7	GO:0005997: xylulose metabolic process	0.00E+00
8	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
9	GO:0009768: photosynthesis, light harvesting in photosystem I	1.16E-13
10	GO:0018298: protein-chromophore linkage	3.71E-09
11	GO:0009409: response to cold	1.51E-08
12	GO:0009644: response to high light intensity	8.20E-07
13	GO:0007623: circadian rhythm	1.73E-06
14	GO:0009645: response to low light intensity stimulus	3.90E-06
15	GO:0009769: photosynthesis, light harvesting in photosystem II	3.90E-06
16	GO:0010218: response to far red light	4.87E-06
17	GO:0009416: response to light stimulus	5.40E-06
18	GO:0042542: response to hydrogen peroxide	1.20E-05
19	GO:0015979: photosynthesis	2.21E-05
20	GO:0010600: regulation of auxin biosynthetic process	4.83E-05
21	GO:0009817: defense response to fungus, incompatible interaction	6.99E-05
22	GO:0000380: alternative mRNA splicing, via spliceosome	7.68E-05
23	GO:0009637: response to blue light	1.08E-04
24	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.53E-04
25	GO:0010114: response to red light	1.70E-04
26	GO:0010928: regulation of auxin mediated signaling pathway	2.55E-04
27	GO:1902265: abscisic acid homeostasis	2.68E-04
28	GO:0015812: gamma-aminobutyric acid transport	2.68E-04
29	GO:0032958: inositol phosphate biosynthetic process	2.68E-04
30	GO:0006369: termination of RNA polymerase II transcription	2.68E-04
31	GO:0034472: snRNA 3'-end processing	2.68E-04
32	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	2.68E-04
33	GO:0010496: intercellular transport	2.68E-04
34	GO:1900060: negative regulation of ceramide biosynthetic process	2.68E-04
35	GO:0010286: heat acclimation	4.36E-04
36	GO:0048833: specification of floral organ number	5.89E-04
37	GO:0015857: uracil transport	5.89E-04
38	GO:1902884: positive regulation of response to oxidative stress	5.89E-04
39	GO:0051170: nuclear import	5.89E-04
40	GO:0030003: cellular cation homeostasis	5.89E-04
41	GO:0090156: cellular sphingolipid homeostasis	5.89E-04
42	GO:0015720: allantoin transport	5.89E-04
43	GO:0006883: cellular sodium ion homeostasis	5.89E-04
44	GO:0090057: root radial pattern formation	5.89E-04
45	GO:0009737: response to abscisic acid	6.53E-04
46	GO:0009651: response to salt stress	7.58E-04
47	GO:1902448: positive regulation of shade avoidance	9.55E-04
48	GO:0042344: indole glucosinolate catabolic process	9.55E-04
49	GO:0006598: polyamine catabolic process	9.55E-04
50	GO:1901562: response to paraquat	9.55E-04
51	GO:0071705: nitrogen compound transport	9.55E-04
52	GO:0042256: mature ribosome assembly	9.55E-04
53	GO:0009414: response to water deprivation	1.05E-03
54	GO:0010228: vegetative to reproductive phase transition of meristem	1.21E-03
55	GO:0044211: CTP salvage	1.36E-03
56	GO:0015749: monosaccharide transport	1.36E-03
57	GO:1901332: negative regulation of lateral root development	1.36E-03
58	GO:0006020: inositol metabolic process	1.36E-03
59	GO:0010601: positive regulation of auxin biosynthetic process	1.36E-03
60	GO:0008643: carbohydrate transport	1.44E-03
61	GO:0048511: rhythmic process	1.46E-03
62	GO:0010017: red or far-red light signaling pathway	1.60E-03
63	GO:0009765: photosynthesis, light harvesting	1.83E-03
64	GO:1901002: positive regulation of response to salt stress	1.83E-03
65	GO:0030104: water homeostasis	1.83E-03
66	GO:1901409: positive regulation of phosphorylation of RNA polymerase II C-terminal domain	1.83E-03
67	GO:0010508: positive regulation of autophagy	1.83E-03
68	GO:0044206: UMP salvage	1.83E-03
69	GO:0006646: phosphatidylethanolamine biosynthetic process	1.83E-03
70	GO:0009687: abscisic acid metabolic process	1.83E-03
71	GO:0015743: malate transport	1.83E-03
72	GO:0048442: sepal development	1.83E-03
73	GO:0009585: red, far-red light phototransduction	1.91E-03
74	GO:0048578: positive regulation of long-day photoperiodism, flowering	2.33E-03
75	GO:0016926: protein desumoylation	2.33E-03
76	GO:0043097: pyrimidine nucleoside salvage	2.33E-03
77	GO:0097428: protein maturation by iron-sulfur cluster transfer	2.33E-03
78	GO:0006814: sodium ion transport	2.56E-03
79	GO:0042732: D-xylose metabolic process	2.88E-03
80	GO:0031053: primary miRNA processing	2.88E-03
81	GO:0006206: pyrimidine nucleobase metabolic process	2.88E-03
82	GO:0000741: karyogamy	2.88E-03
83	GO:0009635: response to herbicide	2.88E-03
84	GO:0009735: response to cytokinin	3.02E-03
85	GO:0080167: response to karrikin	3.04E-03
86	GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity	3.46E-03
87	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	3.46E-03
88	GO:0048437: floral organ development	4.08E-03
89	GO:1900057: positive regulation of leaf senescence	4.08E-03
90	GO:0010038: response to metal ion	4.08E-03
91	GO:0010044: response to aluminum ion	4.08E-03
92	GO:0010161: red light signaling pathway	4.08E-03
93	GO:0009819: drought recovery	4.73E-03
94	GO:0009415: response to water	4.73E-03
95	GO:0009704: de-etiolation	4.73E-03
96	GO:0032508: DNA duplex unwinding	4.73E-03
97	GO:0015995: chlorophyll biosynthetic process	5.00E-03
98	GO:0009827: plant-type cell wall modification	5.42E-03
99	GO:0001510: RNA methylation	5.42E-03
100	GO:0010099: regulation of photomorphogenesis	5.42E-03
101	GO:0009408: response to heat	5.50E-03
102	GO:0000160: phosphorelay signal transduction system	5.82E-03
103	GO:0006811: ion transport	6.11E-03
104	GO:0006098: pentose-phosphate shunt	6.14E-03
105	GO:0090333: regulation of stomatal closure	6.14E-03
106	GO:0046916: cellular transition metal ion homeostasis	6.14E-03
107	GO:0010119: regulation of stomatal movement	6.40E-03
108	GO:0009631: cold acclimation	6.40E-03
109	GO:0010043: response to zinc ion	6.40E-03
110	GO:0006355: regulation of transcription, DNA-templated	6.77E-03
111	GO:0030042: actin filament depolymerization	6.90E-03
112	GO:0048354: mucilage biosynthetic process involved in seed coat development	6.90E-03
113	GO:0045087: innate immune response	7.02E-03
114	GO:0016051: carbohydrate biosynthetic process	7.02E-03
115	GO:0010468: regulation of gene expression	7.49E-03
116	GO:0010162: seed dormancy process	7.68E-03
117	GO:0009970: cellular response to sulfate starvation	7.68E-03
118	GO:0055062: phosphate ion homeostasis	7.68E-03
119	GO:0006995: cellular response to nitrogen starvation	7.68E-03
120	GO:0048441: petal development	7.68E-03
121	GO:0009641: shade avoidance	7.68E-03
122	GO:0006816: calcium ion transport	8.50E-03
123	GO:0009682: induced systemic resistance	8.50E-03
124	GO:0052544: defense response by callose deposition in cell wall	8.50E-03
125	GO:0030148: sphingolipid biosynthetic process	8.50E-03
126	GO:0009640: photomorphogenesis	9.06E-03
127	GO:0016925: protein sumoylation	9.35E-03
128	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	1.02E-02
129	GO:0050826: response to freezing	1.02E-02
130	GO:0009718: anthocyanin-containing compound biosynthetic process	1.02E-02
131	GO:0009767: photosynthetic electron transport chain	1.02E-02
132	GO:0048440: carpel development	1.11E-02
133	GO:0007015: actin filament organization	1.11E-02
134	GO:0009266: response to temperature stimulus	1.11E-02
135	GO:0042538: hyperosmotic salinity response	1.14E-02
136	GO:0019853: L-ascorbic acid biosynthetic process	1.21E-02
137	GO:0090351: seedling development	1.21E-02
138	GO:0010030: positive regulation of seed germination	1.21E-02
139	GO:0051603: proteolysis involved in cellular protein catabolic process	1.27E-02
140	GO:0034976: response to endoplasmic reticulum stress	1.30E-02
141	GO:0006406: mRNA export from nucleus	1.40E-02
142	GO:0035556: intracellular signal transduction	1.42E-02
143	GO:0016575: histone deacetylation	1.50E-02
144	GO:0006874: cellular calcium ion homeostasis	1.50E-02
145	GO:0007165: signal transduction	1.55E-02
146	GO:0061077: chaperone-mediated protein folding	1.61E-02
147	GO:0009269: response to desiccation	1.61E-02
148	GO:0003333: amino acid transmembrane transport	1.61E-02
149	GO:0010431: seed maturation	1.61E-02
150	GO:0019748: secondary metabolic process	1.71E-02
151	GO:0045892: negative regulation of transcription, DNA-templated	1.76E-02
152	GO:0009693: ethylene biosynthetic process	1.82E-02
153	GO:0071215: cellular response to abscisic acid stimulus	1.82E-02
154	GO:0006012: galactose metabolic process	1.82E-02
155	GO:0048443: stamen development	1.94E-02
156	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.05E-02
157	GO:0008284: positive regulation of cell proliferation	2.05E-02
158	GO:0010501: RNA secondary structure unwinding	2.17E-02
159	GO:0010197: polar nucleus fusion	2.29E-02
160	GO:0046323: glucose import	2.29E-02
161	GO:0042752: regulation of circadian rhythm	2.41E-02
162	GO:0005975: carbohydrate metabolic process	2.47E-02
163	GO:0008654: phospholipid biosynthetic process	2.53E-02
164	GO:0009556: microsporogenesis	2.53E-02
165	GO:0046686: response to cadmium ion	2.58E-02
166	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.65E-02
167	GO:0000302: response to reactive oxygen species	2.65E-02
168	GO:1901657: glycosyl compound metabolic process	2.91E-02
169	GO:0019760: glucosinolate metabolic process	3.04E-02
170	GO:0006914: autophagy	3.04E-02
171	GO:0016126: sterol biosynthetic process	3.45E-02
172	GO:0009911: positive regulation of flower development	3.45E-02
173	GO:0010029: regulation of seed germination	3.59E-02
174	GO:0009617: response to bacterium	3.60E-02
175	GO:0055114: oxidation-reduction process	3.87E-02
176	GO:0006888: ER to Golgi vesicle-mediated transport	3.88E-02
177	GO:0048573: photoperiodism, flowering	3.88E-02
178	GO:0009908: flower development	4.04E-02
179	GO:0009738: abscisic acid-activated signaling pathway	4.39E-02

Rank	GO Term	Adjusted P value
1	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
2	GO:0042907: xanthine transmembrane transporter activity	0.00E+00
3	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
4	GO:0009045: xylose isomerase activity	0.00E+00
5	GO:0080082: esculin beta-glucosidase activity	0.00E+00
6	GO:0004567: beta-mannosidase activity	0.00E+00
7	GO:0005358: high-affinity hydrogen:glucose symporter activity	0.00E+00
8	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
9	GO:0016428: tRNA (cytosine-5-)-methyltransferase activity	0.00E+00
10	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
11	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
12	GO:0005272: sodium channel activity	0.00E+00
13	GO:0031409: pigment binding	5.04E-12
14	GO:0016168: chlorophyll binding	1.66E-09
15	GO:0005253: anion channel activity	4.83E-05
16	GO:0046870: cadmium ion binding	2.68E-04
17	GO:0004856: xylulokinase activity	2.68E-04
18	GO:0000828: inositol hexakisphosphate kinase activity	2.68E-04
19	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	2.68E-04
20	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	2.68E-04
21	GO:0009679: hexose:proton symporter activity	2.68E-04
22	GO:0000829: inositol heptakisphosphate kinase activity	2.68E-04
23	GO:0080079: cellobiose glucosidase activity	2.68E-04
24	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	5.89E-04
25	GO:0016630: protochlorophyllide reductase activity	5.89E-04
26	GO:0015180: L-alanine transmembrane transporter activity	5.89E-04
27	GO:0001047: core promoter binding	5.89E-04
28	GO:0032791: lead ion binding	5.89E-04
29	GO:0005274: allantoin uptake transmembrane transporter activity	5.89E-04
30	GO:0004609: phosphatidylserine decarboxylase activity	5.89E-04
31	GO:0047216: inositol 3-alpha-galactosyltransferase activity	5.89E-04
32	GO:0017150: tRNA dihydrouridine synthase activity	9.55E-04
33	GO:0004096: catalase activity	9.55E-04
34	GO:0046592: polyamine oxidase activity	9.55E-04
35	GO:0019948: SUMO activating enzyme activity	9.55E-04
36	GO:0000254: C-4 methylsterol oxidase activity	1.36E-03
37	GO:0015181: arginine transmembrane transporter activity	1.36E-03
38	GO:0015189: L-lysine transmembrane transporter activity	1.36E-03
39	GO:0004707: MAP kinase activity	1.46E-03
40	GO:0015210: uracil transmembrane transporter activity	1.83E-03
41	GO:0005313: L-glutamate transmembrane transporter activity	1.83E-03
42	GO:0004845: uracil phosphoribosyltransferase activity	1.83E-03
43	GO:0015145: monosaccharide transmembrane transporter activity	2.33E-03
44	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	2.33E-03
45	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.33E-03
46	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	2.33E-03
47	GO:0016929: SUMO-specific protease activity	2.33E-03
48	GO:0010294: abscisic acid glucosyltransferase activity	2.33E-03
49	GO:0005515: protein binding	2.39E-03
50	GO:0046872: metal ion binding	2.68E-03
51	GO:0004629: phospholipase C activity	2.88E-03
52	GO:0015562: efflux transmembrane transporter activity	2.88E-03
53	GO:0019137: thioglucosidase activity	2.88E-03
54	GO:0000293: ferric-chelate reductase activity	2.88E-03
55	GO:0005247: voltage-gated chloride channel activity	2.88E-03
56	GO:0000156: phosphorelay response regulator activity	3.35E-03
57	GO:0004849: uridine kinase activity	3.46E-03
58	GO:0005261: cation channel activity	3.46E-03
59	GO:0004435: phosphatidylinositol phospholipase C activity	3.46E-03
60	GO:0009881: photoreceptor activity	4.08E-03
61	GO:0015140: malate transmembrane transporter activity	4.08E-03
62	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.11E-03
63	GO:0004033: aldo-keto reductase (NADP) activity	4.73E-03
64	GO:0004525: ribonuclease III activity	4.73E-03
65	GO:0102483: scopolin beta-glucosidase activity	5.00E-03
66	GO:0005267: potassium channel activity	5.42E-03
67	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	5.42E-03
68	GO:0008308: voltage-gated anion channel activity	5.42E-03
69	GO:0001104: RNA polymerase II transcription cofactor activity	5.42E-03
70	GO:0005351: sugar:proton symporter activity	5.81E-03
71	GO:0000989: transcription factor activity, transcription factor binding	6.14E-03
72	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	6.14E-03
73	GO:0008422: beta-glucosidase activity	7.67E-03
74	GO:0044183: protein binding involved in protein folding	8.50E-03
75	GO:0047372: acylglycerol lipase activity	8.50E-03
76	GO:0004565: beta-galactosidase activity	1.02E-02
77	GO:0005198: structural molecule activity	1.02E-02
78	GO:0004022: alcohol dehydrogenase (NAD) activity	1.02E-02
79	GO:0005315: inorganic phosphate transmembrane transporter activity	1.02E-02
80	GO:0005262: calcium channel activity	1.02E-02
81	GO:0004175: endopeptidase activity	1.11E-02
82	GO:0008131: primary amine oxidase activity	1.11E-02
83	GO:0031624: ubiquitin conjugating enzyme binding	1.11E-02
84	GO:0003712: transcription cofactor activity	1.21E-02
85	GO:0004970: ionotropic glutamate receptor activity	1.21E-02
86	GO:0005217: intracellular ligand-gated ion channel activity	1.21E-02
87	GO:0008234: cysteine-type peptidase activity	1.36E-02
88	GO:0004497: monooxygenase activity	1.37E-02
89	GO:0051536: iron-sulfur cluster binding	1.40E-02
90	GO:0004407: histone deacetylase activity	1.40E-02
91	GO:0005215: transporter activity	1.44E-02
92	GO:0008324: cation transmembrane transporter activity	1.50E-02
93	GO:0051087: chaperone binding	1.50E-02
94	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.61E-02
95	GO:0008514: organic anion transmembrane transporter activity	1.94E-02
96	GO:0008270: zinc ion binding	2.23E-02
97	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	2.29E-02
98	GO:0015144: carbohydrate transmembrane transporter activity	2.62E-02
99	GO:0004197: cysteine-type endopeptidase activity	2.78E-02
100	GO:0015297: antiporter activity	2.88E-02
101	GO:0005506: iron ion binding	3.65E-02
102	GO:0008375: acetylglucosaminyltransferase activity	3.73E-02
103	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	4.47E-02
104	GO:0008168: methyltransferase activity	4.49E-02
105	GO:0050897: cobalt ion binding	4.62E-02
106	GO:0003697: single-stranded DNA binding	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0009522: photosystem I	1.81E-10
2	GO:0030076: light-harvesting complex	3.27E-10
3	GO:0010287: plastoglobule	2.26E-08
4	GO:0009523: photosystem II	5.59E-07
5	GO:0009534: chloroplast thylakoid	1.36E-06
6	GO:0016021: integral component of membrane	6.66E-06
7	GO:0009579: thylakoid	1.08E-05
8	GO:0009941: chloroplast envelope	1.94E-05
9	GO:0009535: chloroplast thylakoid membrane	2.31E-04
10	GO:0035339: SPOTS complex	2.68E-04
11	GO:0016020: membrane	8.65E-04
12	GO:0005777: peroxisome	1.21E-03
13	GO:0042651: thylakoid membrane	1.33E-03
14	GO:0010445: nuclear dicing body	1.83E-03
15	GO:0009898: cytoplasmic side of plasma membrane	1.83E-03
16	GO:0032586: protein storage vacuole membrane	1.83E-03
17	GO:0009517: PSII associated light-harvesting complex II	1.83E-03
18	GO:0016607: nuclear speck	2.45E-03
19	GO:0070847: core mediator complex	2.88E-03
20	GO:0005851: eukaryotic translation initiation factor 2B complex	2.88E-03
21	GO:0030127: COPII vesicle coat	2.88E-03
22	GO:0034707: chloride channel complex	2.88E-03
23	GO:0000326: protein storage vacuole	5.42E-03
24	GO:0000307: cyclin-dependent protein kinase holoenzyme complex	5.42E-03
25	GO:0010494: cytoplasmic stress granule	6.14E-03
26	GO:0031307: integral component of mitochondrial outer membrane	9.35E-03
27	GO:0005938: cell cortex	1.02E-02
28	GO:0005764: lysosome	1.11E-02
29	GO:0031966: mitochondrial membrane	1.14E-02
30	GO:0005783: endoplasmic reticulum	1.34E-02
31	GO:0015629: actin cytoskeleton	1.82E-02
32	GO:0009507: chloroplast	2.15E-02
33	GO:0031965: nuclear membrane	2.53E-02
34	GO:0016592: mediator complex	2.78E-02
35	GO:0005622: intracellular	3.09E-02
36	GO:0000932: P-body	3.45E-02
37	GO:0005667: transcription factor complex	3.73E-02
38	GO:0009707: chloroplast outer membrane	4.17E-02
39	GO:0000151: ubiquitin ligase complex	4.17E-02
40	GO:0000786: nucleosome	4.77E-02