co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G56220

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010203: response to very low fluence red light stimulus	0.00E+00
2	GO:0045048: protein insertion into ER membrane	0.00E+00
3	GO:0000380: alternative mRNA splicing, via spliceosome	9.69E-06
4	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	7.75E-05
5	GO:1990641: response to iron ion starvation	7.75E-05
6	GO:1902265: abscisic acid homeostasis	7.75E-05
7	GO:0006970: response to osmotic stress	1.68E-04
8	GO:0006468: protein phosphorylation	1.70E-04
9	GO:0034398: telomere tethering at nuclear periphery	1.85E-04
10	GO:0009257: 10-formyltetrahydrofolate biosynthetic process	1.85E-04
11	GO:0006611: protein export from nucleus	1.85E-04
12	GO:0006101: citrate metabolic process	1.85E-04
13	GO:0006406: mRNA export from nucleus	2.27E-04
14	GO:0090630: activation of GTPase activity	3.11E-04
15	GO:0000055: ribosomal large subunit export from nucleus	3.11E-04
16	GO:0017006: protein-tetrapyrrole linkage	3.11E-04
17	GO:0051028: mRNA transport	3.92E-04
18	GO:0000973: posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery	4.49E-04
19	GO:0009584: detection of visible light	4.49E-04
20	GO:0005987: sucrose catabolic process	4.49E-04
21	GO:0009113: purine nucleobase biosynthetic process	4.49E-04
22	GO:0009741: response to brassinosteroid	4.57E-04
23	GO:0006520: cellular amino acid metabolic process	4.57E-04
24	GO:0048544: recognition of pollen	4.90E-04
25	GO:0006646: phosphatidylethanolamine biosynthetic process	5.98E-04
26	GO:0009687: abscisic acid metabolic process	5.98E-04
27	GO:0010483: pollen tube reception	5.98E-04
28	GO:0007029: endoplasmic reticulum organization	7.57E-04
29	GO:0030308: negative regulation of cell growth	7.57E-04
30	GO:0001666: response to hypoxia	8.00E-04
31	GO:0042732: D-xylose metabolic process	9.24E-04
32	GO:0048573: photoperiodism, flowering	9.33E-04
33	GO:0017148: negative regulation of translation	1.10E-03
34	GO:0010043: response to zinc ion	1.18E-03
35	GO:0010119: regulation of stomatal movement	1.18E-03
36	GO:0010044: response to aluminum ion	1.29E-03
37	GO:0009651: response to salt stress	1.29E-03
38	GO:0010161: red light signaling pathway	1.29E-03
39	GO:0009396: folic acid-containing compound biosynthetic process	1.29E-03
40	GO:0045087: innate immune response	1.29E-03
41	GO:0009723: response to ethylene	1.41E-03
42	GO:0032508: DNA duplex unwinding	1.48E-03
43	GO:0006102: isocitrate metabolic process	1.48E-03
44	GO:0009061: anaerobic respiration	1.48E-03
45	GO:0009819: drought recovery	1.48E-03
46	GO:0007338: single fertilization	1.91E-03
47	GO:0046685: response to arsenic-containing substance	1.91E-03
48	GO:0006098: pentose-phosphate shunt	1.91E-03
49	GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	1.91E-03
50	GO:0008202: steroid metabolic process	2.14E-03
51	GO:0009638: phototropism	2.14E-03
52	GO:0035999: tetrahydrofolate interconversion	2.14E-03
53	GO:0006298: mismatch repair	2.37E-03
54	GO:0009870: defense response signaling pathway, resistance gene-dependent	2.37E-03
55	GO:0006820: anion transport	2.86E-03
56	GO:2000012: regulation of auxin polar transport	3.12E-03
57	GO:0006807: nitrogen compound metabolic process	3.12E-03
58	GO:0009873: ethylene-activated signaling pathway	3.47E-03
59	GO:0010030: positive regulation of seed germination	3.66E-03
60	GO:0019853: L-ascorbic acid biosynthetic process	3.66E-03
61	GO:0034976: response to endoplasmic reticulum stress	3.94E-03
62	GO:0006289: nucleotide-excision repair	4.23E-03
63	GO:0006825: copper ion transport	4.52E-03
64	GO:0016575: histone deacetylation	4.52E-03
65	GO:0009735: response to cytokinin	4.64E-03
66	GO:0009738: abscisic acid-activated signaling pathway	4.98E-03
67	GO:0019748: secondary metabolic process	5.13E-03
68	GO:0010227: floral organ abscission	5.45E-03
69	GO:0006012: galactose metabolic process	5.45E-03
70	GO:0071215: cellular response to abscisic acid stimulus	5.45E-03
71	GO:0035556: intracellular signal transduction	5.56E-03
72	GO:0010228: vegetative to reproductive phase transition of meristem	5.62E-03
73	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	6.10E-03
74	GO:0010501: RNA secondary structure unwinding	6.44E-03
75	GO:0000413: protein peptidyl-prolyl isomerization	6.44E-03
76	GO:0010051: xylem and phloem pattern formation	6.44E-03
77	GO:0006606: protein import into nucleus	6.44E-03
78	GO:0042631: cellular response to water deprivation	6.44E-03
79	GO:0080022: primary root development	6.44E-03
80	GO:0010182: sugar mediated signaling pathway	6.78E-03
81	GO:0009646: response to absence of light	7.13E-03
82	GO:0008654: phospholipid biosynthetic process	7.49E-03
83	GO:0009791: post-embryonic development	7.49E-03
84	GO:0032502: developmental process	8.22E-03
85	GO:0009630: gravitropism	8.22E-03
86	GO:0007264: small GTPase mediated signal transduction	8.22E-03
87	GO:0071281: cellular response to iron ion	8.59E-03
88	GO:0009911: positive regulation of flower development	1.02E-02
89	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.06E-02
90	GO:0010029: regulation of seed germination	1.06E-02
91	GO:0042128: nitrate assimilation	1.10E-02
92	GO:0046777: protein autophosphorylation	1.10E-02
93	GO:0018298: protein-chromophore linkage	1.22E-02
94	GO:0048767: root hair elongation	1.27E-02
95	GO:0010218: response to far red light	1.31E-02
96	GO:0009834: plant-type secondary cell wall biogenesis	1.31E-02
97	GO:0006499: N-terminal protein myristoylation	1.31E-02
98	GO:0009910: negative regulation of flower development	1.36E-02
99	GO:0006099: tricarboxylic acid cycle	1.49E-02
100	GO:0048364: root development	1.59E-02
101	GO:0006897: endocytosis	1.64E-02
102	GO:0042542: response to hydrogen peroxide	1.68E-02
103	GO:0009640: photomorphogenesis	1.73E-02
104	GO:0009585: red, far-red light phototransduction	2.14E-02
105	GO:0005975: carbohydrate metabolic process	2.16E-02
106	GO:0046686: response to cadmium ion	2.23E-02
107	GO:0006857: oligopeptide transport	2.25E-02
108	GO:0009909: regulation of flower development	2.30E-02
109	GO:0009742: brassinosteroid mediated signaling pathway	2.87E-02
110	GO:0009737: response to abscisic acid	3.29E-02
111	GO:0006457: protein folding	3.50E-02
112	GO:0006633: fatty acid biosynthetic process	3.80E-02
113	GO:0007623: circadian rhythm	4.06E-02
114	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	4.40E-02
115	GO:0009739: response to gibberellin	4.40E-02
116	GO:0007166: cell surface receptor signaling pathway	4.47E-02

Rank	GO Term	Adjusted P value
1	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
2	GO:0047787: delta4-3-oxosteroid 5beta-reductase activity	0.00E+00
3	GO:0009045: xylose isomerase activity	0.00E+00
4	GO:0031516: far-red light photoreceptor activity	7.75E-05
5	GO:0035671: enone reductase activity	7.75E-05
6	GO:0016301: kinase activity	1.39E-04
7	GO:0004353: glutamate dehydrogenase [NAD(P)+] activity	1.85E-04
8	GO:0009883: red or far-red light photoreceptor activity	1.85E-04
9	GO:0004609: phosphatidylserine decarboxylase activity	1.85E-04
10	GO:0003994: aconitate hydratase activity	1.85E-04
11	GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity	1.85E-04
12	GO:0004477: methenyltetrahydrofolate cyclohydrolase activity	1.85E-04
13	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	1.85E-04
14	GO:0004352: glutamate dehydrogenase (NAD+) activity	1.85E-04
15	GO:0004329: formate-tetrahydrofolate ligase activity	1.85E-04
16	GO:0005524: ATP binding	2.39E-04
17	GO:0004672: protein kinase activity	2.41E-04
18	GO:0019829: cation-transporting ATPase activity	3.11E-04
19	GO:0008020: G-protein coupled photoreceptor activity	3.11E-04
20	GO:0043023: ribosomal large subunit binding	4.49E-04
21	GO:0048027: mRNA 5'-UTR binding	4.49E-04
22	GO:0004737: pyruvate decarboxylase activity	5.98E-04
23	GO:0016004: phospholipase activator activity	5.98E-04
24	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	7.57E-04
25	GO:0010294: abscisic acid glucosyltransferase activity	7.57E-04
26	GO:0030976: thiamine pyrophosphate binding	9.24E-04
27	GO:0019887: protein kinase regulator activity	1.10E-03
28	GO:0070300: phosphatidic acid binding	1.10E-03
29	GO:0050897: cobalt ion binding	1.18E-03
30	GO:0016831: carboxy-lyase activity	1.29E-03
31	GO:0003697: single-stranded DNA binding	1.29E-03
32	GO:0004564: beta-fructofuranosidase activity	1.48E-03
33	GO:0015288: porin activity	1.48E-03
34	GO:0004033: aldo-keto reductase (NADP) activity	1.48E-03
35	GO:0017056: structural constituent of nuclear pore	1.48E-03
36	GO:0005507: copper ion binding	1.62E-03
37	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	1.69E-03
38	GO:0005375: copper ion transmembrane transporter activity	1.69E-03
39	GO:0005487: nucleocytoplasmic transporter activity	2.14E-03
40	GO:0004575: sucrose alpha-glucosidase activity	2.14E-03
41	GO:0004673: protein histidine kinase activity	2.37E-03
42	GO:0004674: protein serine/threonine kinase activity	2.75E-03
43	GO:0000976: transcription regulatory region sequence-specific DNA binding	2.86E-03
44	GO:0008139: nuclear localization sequence binding	3.12E-03
45	GO:0000155: phosphorelay sensor kinase activity	3.12E-03
46	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	3.12E-03
47	GO:0004407: histone deacetylase activity	4.23E-03
48	GO:0019706: protein-cysteine S-palmitoyltransferase activity	4.82E-03
49	GO:0003729: mRNA binding	5.05E-03
50	GO:0003756: protein disulfide isomerase activity	5.77E-03
51	GO:0042802: identical protein binding	6.82E-03
52	GO:0003684: damaged DNA binding	8.97E-03
53	GO:0030247: polysaccharide binding	1.14E-02
54	GO:0005096: GTPase activator activity	1.27E-02
55	GO:0051539: 4 iron, 4 sulfur cluster binding	1.59E-02
56	GO:0004185: serine-type carboxypeptidase activity	1.73E-02
57	GO:0043621: protein self-association	1.83E-02
58	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.93E-02
59	GO:0003690: double-stranded DNA binding	2.19E-02
60	GO:0031625: ubiquitin protein ligase binding	2.30E-02
61	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.47E-02
62	GO:0080043: quercetin 3-O-glucosyltransferase activity	2.58E-02
63	GO:0080044: quercetin 7-O-glucosyltransferase activity	2.58E-02
64	GO:0016874: ligase activity	2.64E-02
65	GO:0030246: carbohydrate binding	3.64E-02
66	GO:0008194: UDP-glycosyltransferase activity	4.40E-02
67	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0071942: XPC complex	0.00E+00
2	GO:0043680: filiform apparatus	0.00E+00
3	GO:0000111: nucleotide-excision repair factor 2 complex	0.00E+00
4	GO:0005829: cytosol	4.58E-05
5	GO:0044614: nuclear pore cytoplasmic filaments	3.11E-04
6	GO:0005886: plasma membrane	6.66E-04
7	GO:0030131: clathrin adaptor complex	1.48E-03
8	GO:0016604: nuclear body	2.14E-03
9	GO:0030125: clathrin vesicle coat	2.37E-03
10	GO:0005794: Golgi apparatus	4.67E-03
11	GO:0005905: clathrin-coated pit	4.82E-03
12	GO:0005777: peroxisome	6.19E-03
13	GO:0031965: nuclear membrane	7.49E-03
14	GO:0005802: trans-Golgi network	9.45E-03
15	GO:0005768: endosome	1.11E-02
16	GO:0043231: intracellular membrane-bounded organelle	1.68E-02
17	GO:0005783: endoplasmic reticulum	1.71E-02
18	GO:0009506: plasmodesma	1.88E-02
19	GO:0048046: apoplast	1.95E-02
20	GO:0005635: nuclear envelope	2.25E-02
21	GO:0016607: nuclear speck	2.47E-02
22	GO:0016021: integral component of membrane	2.58E-02
23	GO:0005737: cytoplasm	2.86E-02
24	GO:0005654: nucleoplasm	3.17E-02
25	GO:0009705: plant-type vacuole membrane	4.06E-02