Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G56190

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0015822: ornithine transport0.00E+00
2GO:0005996: monosaccharide metabolic process0.00E+00
3GO:0007638: mechanosensory behavior0.00E+00
4GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
5GO:0071370: cellular response to gibberellin stimulus0.00E+00
6GO:0006573: valine metabolic process0.00E+00
7GO:0051881: regulation of mitochondrial membrane potential0.00E+00
8GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
9GO:0045761: regulation of adenylate cyclase activity0.00E+00
10GO:0045740: positive regulation of DNA replication0.00E+00
11GO:0019253: reductive pentose-phosphate cycle1.52E-06
12GO:0018119: peptidyl-cysteine S-nitrosylation3.07E-05
13GO:0019464: glycine decarboxylation via glycine cleavage system5.29E-05
14GO:0006546: glycine catabolic process5.29E-05
15GO:0009902: chloroplast relocation5.29E-05
16GO:0006810: transport7.30E-05
17GO:0017148: negative regulation of translation1.67E-04
18GO:0016117: carotenoid biosynthetic process2.11E-04
19GO:0045454: cell redox homeostasis2.14E-04
20GO:0007155: cell adhesion2.76E-04
21GO:0008610: lipid biosynthetic process2.76E-04
22GO:0019510: S-adenosylhomocysteine catabolic process2.82E-04
23GO:0010597: green leaf volatile biosynthetic process2.82E-04
24GO:1901349: glucosinolate transport2.82E-04
25GO:1902265: abscisic acid homeostasis2.82E-04
26GO:0090449: phloem glucosinolate loading2.82E-04
27GO:0006659: phosphatidylserine biosynthetic process2.82E-04
28GO:0006551: leucine metabolic process2.82E-04
29GO:0000066: mitochondrial ornithine transport2.82E-04
30GO:0009617: response to bacterium3.17E-04
31GO:0055114: oxidation-reduction process4.20E-04
32GO:0030388: fructose 1,6-bisphosphate metabolic process6.19E-04
33GO:2000123: positive regulation of stomatal complex development6.19E-04
34GO:0010275: NAD(P)H dehydrogenase complex assembly6.19E-04
35GO:0043039: tRNA aminoacylation6.19E-04
36GO:0006695: cholesterol biosynthetic process6.19E-04
37GO:0033353: S-adenosylmethionine cycle6.19E-04
38GO:1902326: positive regulation of chlorophyll biosynthetic process6.19E-04
39GO:0007163: establishment or maintenance of cell polarity6.19E-04
40GO:1904143: positive regulation of carotenoid biosynthetic process6.19E-04
41GO:0008154: actin polymerization or depolymerization6.19E-04
42GO:0043085: positive regulation of catalytic activity6.54E-04
43GO:0000272: polysaccharide catabolic process6.54E-04
44GO:0009409: response to cold8.01E-04
45GO:0031022: nuclear migration along microfilament1.00E-03
46GO:0006000: fructose metabolic process1.00E-03
47GO:0010581: regulation of starch biosynthetic process1.00E-03
48GO:0071492: cellular response to UV-A1.00E-03
49GO:0006696: ergosterol biosynthetic process1.00E-03
50GO:0005985: sucrose metabolic process1.06E-03
51GO:0006839: mitochondrial transport1.23E-03
52GO:0007231: osmosensory signaling pathway1.44E-03
53GO:0009052: pentose-phosphate shunt, non-oxidative branch1.44E-03
54GO:0033014: tetrapyrrole biosynthetic process1.44E-03
55GO:0009695: jasmonic acid biosynthetic process1.44E-03
56GO:2001141: regulation of RNA biosynthetic process1.44E-03
57GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.44E-03
58GO:0009744: response to sucrose1.44E-03
59GO:0031408: oxylipin biosynthetic process1.58E-03
60GO:0006730: one-carbon metabolic process1.72E-03
61GO:0008152: metabolic process1.75E-03
62GO:0071486: cellular response to high light intensity1.92E-03
63GO:0009765: photosynthesis, light harvesting1.92E-03
64GO:2000122: negative regulation of stomatal complex development1.92E-03
65GO:0045727: positive regulation of translation1.92E-03
66GO:0033500: carbohydrate homeostasis1.92E-03
67GO:2000038: regulation of stomatal complex development1.92E-03
68GO:0006021: inositol biosynthetic process1.92E-03
69GO:0034440: lipid oxidation1.92E-03
70GO:0009694: jasmonic acid metabolic process1.92E-03
71GO:0010037: response to carbon dioxide1.92E-03
72GO:0006542: glutamine biosynthetic process1.92E-03
73GO:0006479: protein methylation1.92E-03
74GO:0019676: ammonia assimilation cycle1.92E-03
75GO:0015976: carbon utilization1.92E-03
76GO:0016123: xanthophyll biosynthetic process2.46E-03
77GO:0010375: stomatal complex patterning2.46E-03
78GO:0016120: carotene biosynthetic process2.46E-03
79GO:0010236: plastoquinone biosynthetic process2.46E-03
80GO:0009658: chloroplast organization2.47E-03
81GO:0010264: myo-inositol hexakisphosphate biosynthetic process3.03E-03
82GO:0006555: methionine metabolic process3.03E-03
83GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity3.03E-03
84GO:0016554: cytidine to uridine editing3.03E-03
85GO:0009117: nucleotide metabolic process3.03E-03
86GO:0071554: cell wall organization or biogenesis3.18E-03
87GO:0080167: response to karrikin3.42E-03
88GO:0046686: response to cadmium ion3.45E-03
89GO:0009735: response to cytokinin3.47E-03
90GO:0009082: branched-chain amino acid biosynthetic process3.65E-03
91GO:1901259: chloroplast rRNA processing3.65E-03
92GO:0009099: valine biosynthetic process3.65E-03
93GO:0009903: chloroplast avoidance movement3.65E-03
94GO:0009611: response to wounding4.22E-03
95GO:0080027: response to herbivore4.30E-03
96GO:0007050: cell cycle arrest4.30E-03
97GO:0000082: G1/S transition of mitotic cell cycle4.30E-03
98GO:0042742: defense response to bacterium4.34E-03
99GO:0009787: regulation of abscisic acid-activated signaling pathway4.99E-03
100GO:0006002: fructose 6-phosphate metabolic process5.72E-03
101GO:0071482: cellular response to light stimulus5.72E-03
102GO:0022900: electron transport chain5.72E-03
103GO:0006075: (1->3)-beta-D-glucan biosynthetic process5.72E-03
104GO:0019430: removal of superoxide radicals5.72E-03
105GO:0048193: Golgi vesicle transport5.72E-03
106GO:0009097: isoleucine biosynthetic process5.72E-03
107GO:0009657: plastid organization5.72E-03
108GO:0032544: plastid translation5.72E-03
109GO:0009817: defense response to fungus, incompatible interaction5.98E-03
110GO:0045337: farnesyl diphosphate biosynthetic process6.48E-03
111GO:0033384: geranyl diphosphate biosynthetic process6.48E-03
112GO:0006783: heme biosynthetic process6.48E-03
113GO:0006754: ATP biosynthetic process6.48E-03
114GO:0048589: developmental growth6.48E-03
115GO:0009056: catabolic process6.48E-03
116GO:0006779: porphyrin-containing compound biosynthetic process7.28E-03
117GO:0035999: tetrahydrofolate interconversion7.28E-03
118GO:1900865: chloroplast RNA modification7.28E-03
119GO:0010380: regulation of chlorophyll biosynthetic process7.28E-03
120GO:0016051: carbohydrate biosynthetic process7.59E-03
121GO:0051555: flavonol biosynthetic process8.11E-03
122GO:0006816: calcium ion transport8.97E-03
123GO:0009773: photosynthetic electron transport in photosystem I8.97E-03
124GO:0006352: DNA-templated transcription, initiation8.97E-03
125GO:0006415: translational termination8.97E-03
126GO:0051707: response to other organism9.80E-03
127GO:0006094: gluconeogenesis1.08E-02
128GO:0009767: photosynthetic electron transport chain1.08E-02
129GO:0005986: sucrose biosynthetic process1.08E-02
130GO:0030048: actin filament-based movement1.08E-02
131GO:0010102: lateral root morphogenesis1.08E-02
132GO:0006006: glucose metabolic process1.08E-02
133GO:0030036: actin cytoskeleton organization1.08E-02
134GO:0050826: response to freezing1.08E-02
135GO:0009725: response to hormone1.08E-02
136GO:0010207: photosystem II assembly1.18E-02
137GO:0010020: chloroplast fission1.18E-02
138GO:0009969: xyloglucan biosynthetic process1.28E-02
139GO:0070588: calcium ion transmembrane transport1.28E-02
140GO:0006833: water transport1.38E-02
141GO:0009416: response to light stimulus1.48E-02
142GO:0007010: cytoskeleton organization1.48E-02
143GO:0006096: glycolytic process1.57E-02
144GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.58E-02
145GO:0006418: tRNA aminoacylation for protein translation1.59E-02
146GO:0007017: microtubule-based process1.59E-02
147GO:0048367: shoot system development1.62E-02
148GO:0061077: chaperone-mediated protein folding1.70E-02
149GO:0015979: photosynthesis1.79E-02
150GO:0030245: cellulose catabolic process1.81E-02
151GO:0080092: regulation of pollen tube growth1.81E-02
152GO:0009294: DNA mediated transformation1.93E-02
153GO:0042631: cellular response to water deprivation2.29E-02
154GO:0000271: polysaccharide biosynthetic process2.29E-02
155GO:0080022: primary root development2.29E-02
156GO:0034220: ion transmembrane transport2.29E-02
157GO:0009741: response to brassinosteroid2.42E-02
158GO:0008360: regulation of cell shape2.42E-02
159GO:0045489: pectin biosynthetic process2.42E-02
160GO:0006662: glycerol ether metabolic process2.42E-02
161GO:0009646: response to absence of light2.54E-02
162GO:0009791: post-embryonic development2.67E-02
163GO:0019252: starch biosynthetic process2.67E-02
164GO:0008654: phospholipid biosynthetic process2.67E-02
165GO:0005975: carbohydrate metabolic process2.81E-02
166GO:0007264: small GTPase mediated signal transduction2.94E-02
167GO:0010583: response to cyclopentenone2.94E-02
168GO:0019761: glucosinolate biosynthetic process2.94E-02
169GO:0032502: developmental process2.94E-02
170GO:1901657: glycosyl compound metabolic process3.08E-02
171GO:0045490: pectin catabolic process3.27E-02
172GO:0007267: cell-cell signaling3.36E-02
173GO:0016126: sterol biosynthetic process3.65E-02
174GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.80E-02
175GO:0010029: regulation of seed germination3.80E-02
176GO:0071555: cell wall organization4.17E-02
177GO:0018298: protein-chromophore linkage4.41E-02
178GO:0048767: root hair elongation4.56E-02
179GO:0010311: lateral root formation4.56E-02
180GO:0009407: toxin catabolic process4.72E-02
181GO:0009738: abscisic acid-activated signaling pathway4.82E-02
182GO:0048527: lateral root development4.88E-02
183GO:0010119: regulation of stomatal movement4.88E-02
184GO:0007568: aging4.88E-02
RankGO TermAdjusted P value
1GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
2GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
3GO:0050613: delta14-sterol reductase activity0.00E+00
4GO:0008962: phosphatidylglycerophosphatase activity0.00E+00
5GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
6GO:0008179: adenylate cyclase binding0.00E+00
7GO:0045435: lycopene epsilon cyclase activity0.00E+00
8GO:0030795: jasmonate O-methyltransferase activity0.00E+00
9GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity0.00E+00
10GO:0046905: phytoene synthase activity0.00E+00
11GO:0102078: methyl jasmonate methylesterase activity0.00E+00
12GO:0030598: rRNA N-glycosylase activity0.00E+00
13GO:0051920: peroxiredoxin activity2.76E-06
14GO:0016209: antioxidant activity6.75E-06
15GO:0004148: dihydrolipoyl dehydrogenase activity1.31E-05
16GO:0004375: glycine dehydrogenase (decarboxylating) activity2.94E-05
17GO:0005528: FK506 binding9.62E-05
18GO:0047259: glucomannan 4-beta-mannosyltransferase activity2.82E-04
19GO:0004560: alpha-L-fucosidase activity2.82E-04
20GO:0004013: adenosylhomocysteinase activity2.82E-04
21GO:0004831: tyrosine-tRNA ligase activity2.82E-04
22GO:0003984: acetolactate synthase activity2.82E-04
23GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity2.82E-04
24GO:0004325: ferrochelatase activity2.82E-04
25GO:0051996: squalene synthase activity2.82E-04
26GO:0010313: phytochrome binding2.82E-04
27GO:0090448: glucosinolate:proton symporter activity2.82E-04
28GO:0004575: sucrose alpha-glucosidase activity4.86E-04
29GO:0008047: enzyme activator activity5.67E-04
30GO:0004047: aminomethyltransferase activity6.19E-04
31GO:0080102: 3-methylthiopropyl glucosinolate S-oxygenase activity6.19E-04
32GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.19E-04
33GO:0080104: 5-methylthiopropyl glucosinolate S-oxygenase activity6.19E-04
34GO:0008825: cyclopropane-fatty-acyl-phospholipid synthase activity6.19E-04
35GO:0000064: L-ornithine transmembrane transporter activity6.19E-04
36GO:0004310: farnesyl-diphosphate farnesyltransferase activity6.19E-04
37GO:0004512: inositol-3-phosphate synthase activity6.19E-04
38GO:0080106: 7-methylthiopropyl glucosinolate S-oxygenase activity6.19E-04
39GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity6.19E-04
40GO:0004618: phosphoglycerate kinase activity6.19E-04
41GO:0010297: heteropolysaccharide binding6.19E-04
42GO:0070330: aromatase activity1.00E-03
43GO:0003913: DNA photolyase activity1.00E-03
44GO:0004751: ribose-5-phosphate isomerase activity1.00E-03
45GO:0080103: 4-methylthiopropyl glucosinolate S-oxygenase activity1.00E-03
46GO:0016165: linoleate 13S-lipoxygenase activity1.00E-03
47GO:0008276: protein methyltransferase activity1.44E-03
48GO:0035529: NADH pyrophosphatase activity1.44E-03
49GO:0048027: mRNA 5'-UTR binding1.44E-03
50GO:0080107: 8-methylthiopropyl glucosinolate S-oxygenase activity1.44E-03
51GO:0016149: translation release factor activity, codon specific1.44E-03
52GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.44E-03
53GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.44E-03
54GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.75E-03
55GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.92E-03
56GO:0016987: sigma factor activity1.92E-03
57GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity1.92E-03
58GO:0004659: prenyltransferase activity1.92E-03
59GO:0001053: plastid sigma factor activity1.92E-03
60GO:0016491: oxidoreductase activity2.39E-03
61GO:0016787: hydrolase activity2.39E-03
62GO:0008374: O-acyltransferase activity2.46E-03
63GO:0018685: alkane 1-monooxygenase activity2.46E-03
64GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen2.46E-03
65GO:0004356: glutamate-ammonia ligase activity2.46E-03
66GO:0004791: thioredoxin-disulfide reductase activity2.77E-03
67GO:0080030: methyl indole-3-acetate esterase activity3.03E-03
68GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity3.03E-03
69GO:0102229: amylopectin maltohydrolase activity3.03E-03
70GO:0042578: phosphoric ester hydrolase activity3.03E-03
71GO:0048038: quinone binding3.18E-03
72GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.62E-03
73GO:0051753: mannan synthase activity3.65E-03
74GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity3.65E-03
75GO:0016161: beta-amylase activity3.65E-03
76GO:0052689: carboxylic ester hydrolase activity3.99E-03
77GO:0005200: structural constituent of cytoskeleton4.08E-03
78GO:0009881: photoreceptor activity4.30E-03
79GO:0043295: glutathione binding4.30E-03
80GO:0016413: O-acetyltransferase activity4.33E-03
81GO:0016597: amino acid binding4.33E-03
82GO:0019843: rRNA binding4.38E-03
83GO:0004033: aldo-keto reductase (NADP) activity4.99E-03
84GO:0004564: beta-fructofuranosidase activity4.99E-03
85GO:0003824: catalytic activity5.21E-03
86GO:0003843: 1,3-beta-D-glucan synthase activity5.72E-03
87GO:0004337: geranyltranstransferase activity6.48E-03
88GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism6.48E-03
89GO:0003747: translation release factor activity6.48E-03
90GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds6.59E-03
91GO:0008194: UDP-glycosyltransferase activity7.61E-03
92GO:0050661: NADP binding8.65E-03
93GO:0004161: dimethylallyltranstransferase activity8.97E-03
94GO:0005089: Rho guanyl-nucleotide exchange factor activity8.97E-03
95GO:0008378: galactosyltransferase activity9.88E-03
96GO:0005262: calcium channel activity1.08E-02
97GO:0004565: beta-galactosidase activity1.08E-02
98GO:0004089: carbonate dehydratase activity1.08E-02
99GO:0031072: heat shock protein binding1.08E-02
100GO:0005198: structural molecule activity1.10E-02
101GO:0004601: peroxidase activity1.15E-02
102GO:0016788: hydrolase activity, acting on ester bonds1.18E-02
103GO:0051287: NAD binding1.19E-02
104GO:0080044: quercetin 7-O-glucosyltransferase activity1.72E-02
105GO:0080043: quercetin 3-O-glucosyltransferase activity1.72E-02
106GO:0022857: transmembrane transporter activity1.78E-02
107GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.81E-02
108GO:0016757: transferase activity, transferring glycosyl groups1.83E-02
109GO:0022891: substrate-specific transmembrane transporter activity1.93E-02
110GO:0030570: pectate lyase activity1.93E-02
111GO:0008810: cellulase activity1.93E-02
112GO:0003756: protein disulfide isomerase activity2.05E-02
113GO:0004499: N,N-dimethylaniline monooxygenase activity2.05E-02
114GO:0004812: aminoacyl-tRNA ligase activity2.17E-02
115GO:0047134: protein-disulfide reductase activity2.17E-02
116GO:0016758: transferase activity, transferring hexosyl groups2.30E-02
117GO:0003924: GTPase activity2.48E-02
118GO:0005507: copper ion binding2.50E-02
119GO:0050662: coenzyme binding2.54E-02
120GO:0004872: receptor activity2.67E-02
121GO:0019901: protein kinase binding2.67E-02
122GO:0004518: nuclease activity2.94E-02
123GO:0005525: GTP binding3.09E-02
124GO:0008483: transaminase activity3.36E-02
125GO:0015250: water channel activity3.65E-02
126GO:0016168: chlorophyll binding3.80E-02
127GO:0102483: scopolin beta-glucosidase activity4.10E-02
128GO:0004222: metalloendopeptidase activity4.72E-02
129GO:0050897: cobalt ion binding4.88E-02
RankGO TermAdjusted P value
1GO:0009571: proplastid stroma0.00E+00
2GO:0030864: cortical actin cytoskeleton0.00E+00
3GO:0005948: acetolactate synthase complex0.00E+00
4GO:0009507: chloroplast3.53E-22
5GO:0009570: chloroplast stroma1.51E-15
6GO:0009535: chloroplast thylakoid membrane1.37E-13
7GO:0009941: chloroplast envelope1.91E-12
8GO:0009543: chloroplast thylakoid lumen3.84E-08
9GO:0010319: stromule4.83E-08
10GO:0009579: thylakoid1.97E-07
11GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.36E-05
12GO:0005775: vacuolar lumen2.94E-05
13GO:0005960: glycine cleavage complex2.94E-05
14GO:0048046: apoplast3.51E-05
15GO:0009534: chloroplast thylakoid9.11E-05
16GO:0009344: nitrite reductase complex [NAD(P)H]2.82E-04
17GO:0005773: vacuole5.02E-04
18GO:0000427: plastid-encoded plastid RNA polymerase complex6.19E-04
19GO:0031969: chloroplast membrane7.50E-04
20GO:0000325: plant-type vacuole9.36E-04
21GO:0005853: eukaryotic translation elongation factor 1 complex1.00E-03
22GO:0031977: thylakoid lumen1.30E-03
23GO:0009654: photosystem II oxygen evolving complex1.44E-03
24GO:0009505: plant-type cell wall2.14E-03
25GO:0055035: plastid thylakoid membrane2.46E-03
26GO:0010168: ER body3.03E-03
27GO:0010287: plastoglobule4.09E-03
28GO:0009533: chloroplast stromal thylakoid4.30E-03
29GO:0009539: photosystem II reaction center5.72E-03
30GO:0000148: 1,3-beta-D-glucan synthase complex5.72E-03
31GO:0045298: tubulin complex6.48E-03
32GO:0016324: apical plasma membrane8.11E-03
33GO:0005576: extracellular region8.31E-03
34GO:0031225: anchored component of membrane8.82E-03
35GO:0000311: plastid large ribosomal subunit9.88E-03
36GO:0009508: plastid chromosome1.08E-02
37GO:0030095: chloroplast photosystem II1.18E-02
38GO:0030176: integral component of endoplasmic reticulum membrane1.28E-02
39GO:0005875: microtubule associated complex1.38E-02
40GO:0042651: thylakoid membrane1.59E-02
41GO:0009532: plastid stroma1.70E-02
42GO:0005829: cytosol2.21E-02
43GO:0005743: mitochondrial inner membrane2.26E-02
44GO:0005623: cell2.43E-02
45GO:0009523: photosystem II2.67E-02
46GO:0019898: extrinsic component of membrane2.67E-02
47GO:0016020: membrane2.74E-02
48GO:0009295: nucleoid3.36E-02
49GO:0005778: peroxisomal membrane3.36E-02
50GO:0005794: Golgi apparatus3.96E-02
51GO:0046658: anchored component of plasma membrane4.31E-02
52GO:0009707: chloroplast outer membrane4.41E-02
Gene type



Gene DE type