Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G56060

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010055: atrichoblast differentiation0.00E+00
2GO:0080053: response to phenylalanine0.00E+00
3GO:0002376: immune system process0.00E+00
4GO:0043201: response to leucine0.00E+00
5GO:0043620: regulation of DNA-templated transcription in response to stress0.00E+00
6GO:0006793: phosphorus metabolic process0.00E+00
7GO:0080052: response to histidine0.00E+00
8GO:0051238: sequestering of metal ion0.00E+00
9GO:0046680: response to DDT0.00E+00
10GO:0046865: terpenoid transport0.00E+00
11GO:0006182: cGMP biosynthetic process0.00E+00
12GO:0072722: response to amitrole0.00E+00
13GO:0080169: cellular response to boron-containing substance deprivation0.00E+00
14GO:0071456: cellular response to hypoxia3.37E-11
15GO:0009617: response to bacterium7.98E-10
16GO:0042742: defense response to bacterium1.23E-09
17GO:0006468: protein phosphorylation6.54E-08
18GO:0006032: chitin catabolic process8.42E-08
19GO:0010120: camalexin biosynthetic process1.27E-06
20GO:0006952: defense response4.18E-06
21GO:0000272: polysaccharide catabolic process6.19E-06
22GO:0002237: response to molecule of bacterial origin1.48E-05
23GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response1.71E-05
24GO:0006874: cellular calcium ion homeostasis3.67E-05
25GO:0009627: systemic acquired resistance4.12E-05
26GO:0016998: cell wall macromolecule catabolic process4.44E-05
27GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway4.79E-05
28GO:0050832: defense response to fungus5.07E-05
29GO:0010204: defense response signaling pathway, resistance gene-independent5.48E-05
30GO:0010112: regulation of systemic acquired resistance7.37E-05
31GO:0009626: plant-type hypersensitive response7.56E-05
32GO:0010200: response to chitin7.90E-05
33GO:0009620: response to fungus8.17E-05
34GO:0009737: response to abscisic acid1.13E-04
35GO:0055114: oxidation-reduction process1.14E-04
36GO:0009682: induced systemic resistance1.53E-04
37GO:0051707: response to other organism1.70E-04
38GO:0006536: glutamate metabolic process1.74E-04
39GO:0009751: response to salicylic acid2.13E-04
40GO:0009636: response to toxic substance2.16E-04
41GO:0006855: drug transmembrane transport2.33E-04
42GO:0009697: salicylic acid biosynthetic process2.65E-04
43GO:0070588: calcium ion transmembrane transport3.13E-04
44GO:0010150: leaf senescence3.56E-04
45GO:0002238: response to molecule of fungal origin3.71E-04
46GO:0009817: defense response to fungus, incompatible interaction4.87E-04
47GO:0009407: toxin catabolic process5.67E-04
48GO:0015760: glucose-6-phosphate transport5.75E-04
49GO:1990641: response to iron ion starvation5.75E-04
50GO:0099132: ATP hydrolysis coupled cation transmembrane transport5.75E-04
51GO:0010726: positive regulation of hydrogen peroxide metabolic process5.75E-04
52GO:0010421: hydrogen peroxide-mediated programmed cell death5.75E-04
53GO:1901183: positive regulation of camalexin biosynthetic process5.75E-04
54GO:0009700: indole phytoalexin biosynthetic process5.75E-04
55GO:0000032: cell wall mannoprotein biosynthetic process5.75E-04
56GO:0032491: detection of molecule of fungal origin5.75E-04
57GO:0010230: alternative respiration5.75E-04
58GO:0042759: long-chain fatty acid biosynthetic process5.75E-04
59GO:0032107: regulation of response to nutrient levels5.75E-04
60GO:1903648: positive regulation of chlorophyll catabolic process5.75E-04
61GO:1900057: positive regulation of leaf senescence6.32E-04
62GO:0006979: response to oxidative stress6.76E-04
63GO:0030091: protein repair7.87E-04
64GO:0007186: G-protein coupled receptor signaling pathway9.57E-04
65GO:0009805: coumarin biosynthetic process1.24E-03
66GO:0048569: post-embryonic animal organ development1.24E-03
67GO:0090057: root radial pattern formation1.24E-03
68GO:0010163: high-affinity potassium ion import1.24E-03
69GO:0009866: induced systemic resistance, ethylene mediated signaling pathway1.24E-03
70GO:0006101: citrate metabolic process1.24E-03
71GO:0043066: negative regulation of apoptotic process1.24E-03
72GO:0042939: tripeptide transport1.24E-03
73GO:0002240: response to molecule of oomycetes origin1.24E-03
74GO:0044419: interspecies interaction between organisms1.24E-03
75GO:0031349: positive regulation of defense response1.24E-03
76GO:0015712: hexose phosphate transport1.24E-03
77GO:0051592: response to calcium ion1.24E-03
78GO:0080151: positive regulation of salicylic acid mediated signaling pathway1.24E-03
79GO:0002229: defense response to oomycetes1.32E-03
80GO:0009688: abscisic acid biosynthetic process1.58E-03
81GO:0010252: auxin homeostasis1.69E-03
82GO:0010272: response to silver ion2.03E-03
83GO:0015692: lead ion transport2.03E-03
84GO:0015714: phosphoenolpyruvate transport2.03E-03
85GO:0033591: response to L-ascorbic acid2.03E-03
86GO:0048281: inflorescence morphogenesis2.03E-03
87GO:0080168: abscisic acid transport2.03E-03
88GO:0071367: cellular response to brassinosteroid stimulus2.03E-03
89GO:0034051: negative regulation of plant-type hypersensitive response2.03E-03
90GO:0080055: low-affinity nitrate transport2.03E-03
91GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway2.03E-03
92GO:0035436: triose phosphate transmembrane transport2.03E-03
93GO:0010351: lithium ion transport2.03E-03
94GO:0006869: lipid transport2.29E-03
95GO:0009624: response to nematode2.80E-03
96GO:0070301: cellular response to hydrogen peroxide2.95E-03
97GO:0010104: regulation of ethylene-activated signaling pathway2.95E-03
98GO:0006882: cellular zinc ion homeostasis2.95E-03
99GO:0046513: ceramide biosynthetic process2.95E-03
100GO:0046836: glycolipid transport2.95E-03
101GO:0045017: glycerolipid biosynthetic process2.95E-03
102GO:0010116: positive regulation of abscisic acid biosynthetic process2.95E-03
103GO:0009298: GDP-mannose biosynthetic process2.95E-03
104GO:0048194: Golgi vesicle budding2.95E-03
105GO:0045227: capsule polysaccharide biosynthetic process3.97E-03
106GO:1901002: positive regulation of response to salt stress3.97E-03
107GO:0033358: UDP-L-arabinose biosynthetic process3.97E-03
108GO:0080142: regulation of salicylic acid biosynthetic process3.97E-03
109GO:0015713: phosphoglycerate transport3.97E-03
110GO:0042938: dipeptide transport3.97E-03
111GO:0010109: regulation of photosynthesis3.97E-03
112GO:0045087: innate immune response4.04E-03
113GO:0000304: response to singlet oxygen5.10E-03
114GO:0034052: positive regulation of plant-type hypersensitive response5.10E-03
115GO:0045487: gibberellin catabolic process5.10E-03
116GO:0006097: glyoxylate cycle5.10E-03
117GO:0009744: response to sucrose5.59E-03
118GO:0040008: regulation of growth6.04E-03
119GO:0010256: endomembrane system organization6.33E-03
120GO:0060918: auxin transport6.33E-03
121GO:0009117: nucleotide metabolic process6.33E-03
122GO:0009643: photosynthetic acclimation6.33E-03
123GO:0050665: hydrogen peroxide biosynthetic process6.33E-03
124GO:0006561: proline biosynthetic process6.33E-03
125GO:0010942: positive regulation of cell death6.33E-03
126GO:0015691: cadmium ion transport6.33E-03
127GO:0042391: regulation of membrane potential6.92E-03
128GO:2000067: regulation of root morphogenesis7.65E-03
129GO:0045926: negative regulation of growth7.65E-03
130GO:0009854: oxidative photosynthetic carbon pathway7.65E-03
131GO:0010555: response to mannitol7.65E-03
132GO:0007166: cell surface receptor signaling pathway7.95E-03
133GO:0009749: response to glucose8.63E-03
134GO:0032259: methylation9.02E-03
135GO:0043090: amino acid import9.06E-03
136GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway9.06E-03
137GO:1900056: negative regulation of leaf senescence9.06E-03
138GO:0030026: cellular manganese ion homeostasis9.06E-03
139GO:0000122: negative regulation of transcription from RNA polymerase II promoter9.06E-03
140GO:0050829: defense response to Gram-negative bacterium9.06E-03
141GO:1902074: response to salt9.06E-03
142GO:0010193: response to ozone9.25E-03
143GO:0009787: regulation of abscisic acid-activated signaling pathway1.06E-02
144GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline1.06E-02
145GO:0009819: drought recovery1.06E-02
146GO:0009642: response to light intensity1.06E-02
147GO:2000070: regulation of response to water deprivation1.06E-02
148GO:0006102: isocitrate metabolic process1.06E-02
149GO:0007165: signal transduction1.19E-02
150GO:0009699: phenylpropanoid biosynthetic process1.21E-02
151GO:0001558: regulation of cell growth1.21E-02
152GO:0006075: (1->3)-beta-D-glucan biosynthetic process1.21E-02
153GO:0010262: somatic embryogenesis1.21E-02
154GO:0030968: endoplasmic reticulum unfolded protein response1.21E-02
155GO:0043562: cellular response to nitrogen levels1.21E-02
156GO:0009808: lignin metabolic process1.21E-02
157GO:0051607: defense response to virus1.27E-02
158GO:0009615: response to virus1.34E-02
159GO:0007338: single fertilization1.38E-02
160GO:0034765: regulation of ion transmembrane transport1.38E-02
161GO:0009816: defense response to bacterium, incompatible interaction1.42E-02
162GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.55E-02
163GO:0008202: steroid metabolic process1.55E-02
164GO:0055062: phosphate ion homeostasis1.73E-02
165GO:0010162: seed dormancy process1.73E-02
166GO:0007064: mitotic sister chromatid cohesion1.73E-02
167GO:0009870: defense response signaling pathway, resistance gene-dependent1.73E-02
168GO:0080167: response to karrikin1.74E-02
169GO:0008219: cell death1.76E-02
170GO:0009089: lysine biosynthetic process via diaminopimelate1.92E-02
171GO:0009750: response to fructose1.92E-02
172GO:0048229: gametophyte development1.92E-02
173GO:0042744: hydrogen peroxide catabolic process2.02E-02
174GO:0048527: lateral root development2.04E-02
175GO:0007568: aging2.04E-02
176GO:0006790: sulfur compound metabolic process2.12E-02
177GO:0012501: programmed cell death2.12E-02
178GO:0006820: anion transport2.12E-02
179GO:0015706: nitrate transport2.12E-02
180GO:0002213: defense response to insect2.12E-02
181GO:0006890: retrograde vesicle-mediated transport, Golgi to ER2.12E-02
182GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process2.32E-02
183GO:0055046: microgametogenesis2.32E-02
184GO:0009718: anthocyanin-containing compound biosynthetic process2.32E-02
185GO:0009611: response to wounding2.70E-02
186GO:0009225: nucleotide-sugar metabolic process2.74E-02
187GO:0042343: indole glucosinolate metabolic process2.74E-02
188GO:0019853: L-ascorbic acid biosynthetic process2.74E-02
189GO:0046854: phosphatidylinositol phosphorylation2.74E-02
190GO:0010053: root epidermal cell differentiation2.74E-02
191GO:0042542: response to hydrogen peroxide2.77E-02
192GO:0080147: root hair cell development3.19E-02
193GO:2000377: regulation of reactive oxygen species metabolic process3.19E-02
194GO:0005992: trehalose biosynthetic process3.19E-02
195GO:0046686: response to cadmium ion3.38E-02
196GO:0051302: regulation of cell division3.42E-02
197GO:0009753: response to jasmonic acid3.44E-02
198GO:0031347: regulation of defense response3.49E-02
199GO:0009846: pollen germination3.62E-02
200GO:0042538: hyperosmotic salinity response3.62E-02
201GO:0006812: cation transport3.62E-02
202GO:0098542: defense response to other organism3.66E-02
203GO:0010431: seed maturation3.66E-02
204GO:0009809: lignin biosynthetic process3.88E-02
205GO:0009814: defense response, incompatible interaction3.90E-02
206GO:0031348: negative regulation of defense response3.90E-02
207GO:0019748: secondary metabolic process3.90E-02
208GO:0010224: response to UV-B4.02E-02
209GO:0071215: cellular response to abscisic acid stimulus4.15E-02
210GO:0006857: oligopeptide transport4.15E-02
211GO:0009686: gibberellin biosynthetic process4.15E-02
212GO:0071369: cellular response to ethylene stimulus4.15E-02
213GO:0009625: response to insect4.15E-02
214GO:0010227: floral organ abscission4.15E-02
215GO:0006012: galactose metabolic process4.15E-02
216GO:0010584: pollen exine formation4.41E-02
217GO:0006817: phosphate ion transport4.41E-02
218GO:0009561: megagametogenesis4.41E-02
219GO:0070417: cellular response to cold4.67E-02
220GO:0042631: cellular response to water deprivation4.93E-02
RankGO TermAdjusted P value
1GO:1990837: sequence-specific double-stranded DNA binding0.00E+00
2GO:0047720: indoleacetaldoxime dehydratase activity0.00E+00
3GO:0016312: inositol bisphosphate phosphatase activity0.00E+00
4GO:0008843: endochitinase activity0.00E+00
5GO:0003796: lysozyme activity0.00E+00
6GO:0010298: dihydrocamalexic acid decarboxylase activity0.00E+00
7GO:0035885: exochitinase activity0.00E+00
8GO:0016301: kinase activity3.55E-09
9GO:0004674: protein serine/threonine kinase activity4.12E-07
10GO:0010279: indole-3-acetic acid amido synthetase activity2.44E-06
11GO:0004568: chitinase activity4.40E-06
12GO:0005524: ATP binding5.69E-06
13GO:0016614: oxidoreductase activity, acting on CH-OH group of donors6.75E-06
14GO:0008061: chitin binding1.91E-05
15GO:0050660: flavin adenine dinucleotide binding5.74E-05
16GO:0004351: glutamate decarboxylase activity1.01E-04
17GO:0004364: glutathione transferase activity1.57E-04
18GO:0005388: calcium-transporting ATPase activity2.25E-04
19GO:0005516: calmodulin binding2.76E-04
20GO:0004970: ionotropic glutamate receptor activity3.13E-04
21GO:0005217: intracellular ligand-gated ion channel activity3.13E-04
22GO:0033743: peptide-methionine (R)-S-oxide reductase activity4.94E-04
23GO:0015238: drug transmembrane transporter activity5.26E-04
24GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity5.75E-04
25GO:0004476: mannose-6-phosphate isomerase activity5.75E-04
26GO:0010285: L,L-diaminopimelate aminotransferase activity5.75E-04
27GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors7.03E-04
28GO:0009055: electron carrier activity9.77E-04
29GO:0003994: aconitate hydratase activity1.24E-03
30GO:0015152: glucose-6-phosphate transmembrane transporter activity1.24E-03
31GO:0032934: sterol binding1.24E-03
32GO:0042937: tripeptide transporter activity1.24E-03
33GO:0004385: guanylate kinase activity1.24E-03
34GO:0050291: sphingosine N-acyltransferase activity1.24E-03
35GO:0045543: gibberellin 2-beta-dioxygenase activity1.24E-03
36GO:0015297: antiporter activity1.43E-03
37GO:0008171: O-methyltransferase activity1.58E-03
38GO:0030246: carbohydrate binding1.92E-03
39GO:0042409: caffeoyl-CoA O-methyltransferase activity2.03E-03
40GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity2.03E-03
41GO:0000975: regulatory region DNA binding2.03E-03
42GO:0031683: G-protein beta/gamma-subunit complex binding2.03E-03
43GO:0004383: guanylate cyclase activity2.03E-03
44GO:0071917: triose-phosphate transmembrane transporter activity2.03E-03
45GO:0001664: G-protein coupled receptor binding2.03E-03
46GO:0080054: low-affinity nitrate transmembrane transporter activity2.03E-03
47GO:0017089: glycolipid transporter activity2.95E-03
48GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity2.95E-03
49GO:0035529: NADH pyrophosphatase activity2.95E-03
50GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity2.95E-03
51GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity2.95E-03
52GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity2.95E-03
53GO:0004190: aspartic-type endopeptidase activity3.01E-03
54GO:0042936: dipeptide transporter activity3.97E-03
55GO:0051861: glycolipid binding3.97E-03
56GO:0015369: calcium:proton antiporter activity3.97E-03
57GO:0004031: aldehyde oxidase activity3.97E-03
58GO:0050302: indole-3-acetaldehyde oxidase activity3.97E-03
59GO:0009916: alternative oxidase activity3.97E-03
60GO:0008891: glycolate oxidase activity3.97E-03
61GO:0004930: G-protein coupled receptor activity3.97E-03
62GO:0015120: phosphoglycerate transmembrane transporter activity3.97E-03
63GO:0015368: calcium:cation antiporter activity3.97E-03
64GO:0050373: UDP-arabinose 4-epimerase activity3.97E-03
65GO:0004672: protein kinase activity4.97E-03
66GO:0047631: ADP-ribose diphosphatase activity5.10E-03
67GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity5.10E-03
68GO:0045431: flavonol synthase activity5.10E-03
69GO:0004499: N,N-dimethylaniline monooxygenase activity5.90E-03
70GO:0043565: sequence-specific DNA binding6.04E-03
71GO:0000210: NAD+ diphosphatase activity6.33E-03
72GO:0030976: thiamine pyrophosphate binding6.33E-03
73GO:0046872: metal ion binding6.43E-03
74GO:0005215: transporter activity6.45E-03
75GO:0030551: cyclic nucleotide binding6.92E-03
76GO:0005249: voltage-gated potassium channel activity6.92E-03
77GO:0051920: peroxiredoxin activity7.65E-03
78GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity7.65E-03
79GO:0102391: decanoate--CoA ligase activity7.65E-03
80GO:0004144: diacylglycerol O-acyltransferase activity7.65E-03
81GO:0004012: phospholipid-translocating ATPase activity7.65E-03
82GO:0004656: procollagen-proline 4-dioxygenase activity7.65E-03
83GO:0003978: UDP-glucose 4-epimerase activity7.65E-03
84GO:0008113: peptide-methionine (S)-S-oxide reductase activity7.65E-03
85GO:0005242: inward rectifier potassium channel activity7.65E-03
86GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen7.72E-03
87GO:0102425: myricetin 3-O-glucosyltransferase activity9.06E-03
88GO:0102360: daphnetin 3-O-glucosyltransferase activity9.06E-03
89GO:0005085: guanyl-nucleotide exchange factor activity9.06E-03
90GO:0004467: long-chain fatty acid-CoA ligase activity9.06E-03
91GO:0004143: diacylglycerol kinase activity9.06E-03
92GO:0042626: ATPase activity, coupled to transmembrane movement of substances9.34E-03
93GO:0047893: flavonol 3-O-glucosyltransferase activity1.06E-02
94GO:0015491: cation:cation antiporter activity1.06E-02
95GO:0004033: aldo-keto reductase (NADP) activity1.06E-02
96GO:0015288: porin activity1.06E-02
97GO:0016209: antioxidant activity1.06E-02
98GO:0008483: transaminase activity1.20E-02
99GO:0008142: oxysterol binding1.21E-02
100GO:0003843: 1,3-beta-D-glucan synthase activity1.21E-02
101GO:0008308: voltage-gated anion channel activity1.21E-02
102GO:0004601: peroxidase activity1.26E-02
103GO:0005506: iron ion binding1.31E-02
104GO:0051213: dioxygenase activity1.34E-02
105GO:0020037: heme binding1.47E-02
106GO:0030247: polysaccharide binding1.59E-02
107GO:0008757: S-adenosylmethionine-dependent methyltransferase activity1.67E-02
108GO:0004713: protein tyrosine kinase activity1.73E-02
109GO:0008559: xenobiotic-transporting ATPase activity1.92E-02
110GO:0030170: pyridoxal phosphate binding1.96E-02
111GO:0030145: manganese ion binding2.04E-02
112GO:0004022: alcohol dehydrogenase (NAD) activity2.32E-02
113GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism2.32E-02
114GO:0005315: inorganic phosphate transmembrane transporter activity2.32E-02
115GO:0005262: calcium channel activity2.32E-02
116GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.36E-02
117GO:0008422: beta-glucosidase activity2.44E-02
118GO:0031624: ubiquitin conjugating enzyme binding2.53E-02
119GO:0050661: NADP binding2.55E-02
120GO:0030553: cGMP binding2.74E-02
121GO:0030552: cAMP binding2.74E-02
122GO:0004867: serine-type endopeptidase inhibitor activity2.74E-02
123GO:0008134: transcription factor binding3.19E-02
124GO:0001046: core promoter sequence-specific DNA binding3.19E-02
125GO:0031418: L-ascorbic acid binding3.19E-02
126GO:0015293: symporter activity3.24E-02
127GO:0005216: ion channel activity3.42E-02
128GO:0035251: UDP-glucosyltransferase activity3.66E-02
129GO:0016298: lipase activity4.02E-02
130GO:0008168: methyltransferase activity4.23E-02
131GO:0045735: nutrient reservoir activity4.58E-02
132GO:0019825: oxygen binding4.66E-02
133GO:0005451: monovalent cation:proton antiporter activity4.93E-02
134GO:0043531: ADP binding4.95E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane1.86E-09
2GO:0016021: integral component of membrane5.56E-09
3GO:0005783: endoplasmic reticulum1.64E-04
4GO:0005576: extracellular region1.08E-03
5GO:0030660: Golgi-associated vesicle membrane3.97E-03
6GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane3.97E-03
7GO:0005618: cell wall5.94E-03
8GO:0032588: trans-Golgi network membrane6.33E-03
9GO:0005770: late endosome7.47E-03
10GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane1.06E-02
11GO:0043231: intracellular membrane-bounded organelle1.15E-02
12GO:0000148: 1,3-beta-D-glucan synthase complex1.21E-02
13GO:0046930: pore complex1.21E-02
14GO:0005887: integral component of plasma membrane1.65E-02
15GO:0009707: chloroplast outer membrane1.76E-02
16GO:0005765: lysosomal membrane1.92E-02
17GO:0000325: plant-type vacuole2.04E-02
18GO:0031225: anchored component of membrane2.11E-02
19GO:0070469: respiratory chain3.42E-02
20GO:0031966: mitochondrial membrane3.62E-02
21GO:0005741: mitochondrial outer membrane3.66E-02
Gene type



Gene DE type