co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G55920

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015833: peptide transport	0.00E+00
2	GO:0006995: cellular response to nitrogen starvation	1.97E-05
3	GO:0009640: photomorphogenesis	1.99E-05
4	GO:0046520: sphingoid biosynthetic process	2.88E-05
5	GO:0042939: tripeptide transport	7.28E-05
6	GO:0009308: amine metabolic process	7.28E-05
7	GO:0019222: regulation of metabolic process	7.28E-05
8	GO:0048255: mRNA stabilization	7.28E-05
9	GO:0090630: activation of GTPase activity	1.27E-04
10	GO:1902448: positive regulation of shade avoidance	1.27E-04
11	GO:0009963: positive regulation of flavonoid biosynthetic process	1.89E-04
12	GO:0006809: nitric oxide biosynthetic process	1.89E-04
13	GO:0042594: response to starvation	2.57E-04
14	GO:0042938: dipeptide transport	2.57E-04
15	GO:0051365: cellular response to potassium ion starvation	2.57E-04
16	GO:0044550: secondary metabolite biosynthetic process	3.43E-04
17	GO:0009769: photosynthesis, light harvesting in photosystem II	5.68E-04
18	GO:0009395: phospholipid catabolic process	5.68E-04
19	GO:0055114: oxidation-reduction process	6.78E-04
20	GO:0034765: regulation of ion transmembrane transport	8.35E-04
21	GO:0055062: phosphate ion homeostasis	1.03E-03
22	GO:0009641: shade avoidance	1.03E-03
23	GO:0009416: response to light stimulus	1.03E-03
24	GO:0009970: cellular response to sulfate starvation	1.03E-03
25	GO:0050826: response to freezing	1.34E-03
26	GO:0016036: cellular response to phosphate starvation	1.43E-03
27	GO:0090351: seedling development	1.56E-03
28	GO:0034976: response to endoplasmic reticulum stress	1.67E-03
29	GO:0009768: photosynthesis, light harvesting in photosystem I	1.92E-03
30	GO:0048511: rhythmic process	2.04E-03
31	GO:0010227: floral organ abscission	2.30E-03
32	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.57E-03
33	GO:0010154: fruit development	2.84E-03
34	GO:0006623: protein targeting to vacuole	3.13E-03
35	GO:0015031: protein transport	3.37E-03
36	GO:0010252: auxin homeostasis	3.73E-03
37	GO:0006914: autophagy	3.73E-03
38	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	4.37E-03
39	GO:0048573: photoperiodism, flowering	4.71E-03
40	GO:0018298: protein-chromophore linkage	5.05E-03
41	GO:0009631: cold acclimation	5.58E-03
42	GO:0042542: response to hydrogen peroxide	6.89E-03
43	GO:0000209: protein polyubiquitination	7.28E-03
44	GO:0008643: carbohydrate transport	7.48E-03
45	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	8.09E-03
46	GO:0000165: MAPK cascade	8.09E-03
47	GO:0009809: lignin biosynthetic process	8.71E-03
48	GO:0006813: potassium ion transport	8.71E-03
49	GO:0048316: seed development	1.00E-02
50	GO:0048367: shoot system development	1.00E-02
51	GO:0009620: response to fungus	1.05E-02
52	GO:0042744: hydrogen peroxide catabolic process	1.43E-02
53	GO:0009790: embryo development	1.46E-02
54	GO:0040008: regulation of growth	1.59E-02
55	GO:0010228: vegetative to reproductive phase transition of meristem	1.70E-02
56	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.78E-02
57	GO:0010468: regulation of gene expression	1.86E-02
58	GO:0009409: response to cold	2.07E-02
59	GO:0080167: response to karrikin	2.61E-02
60	GO:0016192: vesicle-mediated transport	2.71E-02
61	GO:0015979: photosynthesis	2.87E-02
62	GO:0045454: cell redox homeostasis	2.97E-02
63	GO:0048364: root development	3.55E-02
64	GO:0009873: ethylene-activated signaling pathway	4.13E-02
65	GO:0016567: protein ubiquitination	4.63E-02
66	GO:0009908: flower development	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0015334: high-affinity oligopeptide transporter activity	0.00E+00
2	GO:0047205: quinate O-hydroxycinnamoyltransferase activity	0.00E+00
3	GO:0047172: shikimate O-hydroxycinnamoyltransferase activity	0.00E+00
4	GO:0015197: peptide transporter activity	0.00E+00
5	GO:0052594: aminoacetone:oxygen oxidoreductase(deaminating) activity	2.88E-05
6	GO:0052593: tryptamine:oxygen oxidoreductase (deaminating) activity	2.88E-05
7	GO:0052595: aliphatic-amine oxidase activity	2.88E-05
8	GO:0005244: voltage-gated ion channel activity	2.88E-05
9	GO:0000170: sphingosine hydroxylase activity	2.88E-05
10	GO:0017091: AU-rich element binding	2.88E-05
11	GO:0052596: phenethylamine:oxygen oxidoreductase (deaminating) activity	2.88E-05
12	GO:0042937: tripeptide transporter activity	7.28E-05
13	GO:0042284: sphingolipid delta-4 desaturase activity	7.28E-05
14	GO:0004096: catalase activity	1.27E-04
15	GO:0042936: dipeptide transporter activity	2.57E-04
16	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	3.30E-04
17	GO:0002020: protease binding	3.30E-04
18	GO:0050897: cobalt ion binding	3.47E-04
19	GO:0005506: iron ion binding	3.79E-04
20	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	4.29E-04
21	GO:0005515: protein binding	7.14E-04
22	GO:0005267: potassium channel activity	7.44E-04
23	GO:0020037: heme binding	7.80E-04
24	GO:0000989: transcription factor activity, transcription factor binding	8.35E-04
25	GO:0045309: protein phosphorylated amino acid binding	9.29E-04
26	GO:0019904: protein domain specific binding	1.13E-03
27	GO:0004177: aminopeptidase activity	1.13E-03
28	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.15E-03
29	GO:0008081: phosphoric diester hydrolase activity	1.34E-03
30	GO:0008131: primary amine oxidase activity	1.45E-03
31	GO:0008270: zinc ion binding	1.50E-03
32	GO:0003712: transcription cofactor activity	1.56E-03
33	GO:0019825: oxygen binding	1.60E-03
34	GO:0031409: pigment binding	1.67E-03
35	GO:0004707: MAP kinase activity	2.04E-03
36	GO:0003756: protein disulfide isomerase activity	2.43E-03
37	GO:0030276: clathrin binding	2.84E-03
38	GO:0008233: peptidase activity	2.84E-03
39	GO:0004497: monooxygenase activity	2.89E-03
40	GO:0048038: quinone binding	3.28E-03
41	GO:0016168: chlorophyll binding	4.37E-03
42	GO:0005096: GTPase activator activity	5.22E-03
43	GO:0003993: acid phosphatase activity	6.13E-03
44	GO:0035091: phosphatidylinositol binding	7.48E-03
45	GO:0031625: ubiquitin protein ligase binding	9.36E-03
46	GO:0005351: sugar:proton symporter activity	1.62E-02
47	GO:0003824: catalytic activity	1.67E-02
48	GO:0005215: transporter activity	1.69E-02
49	GO:0004842: ubiquitin-protein transferase activity	2.11E-02
50	GO:0016788: hydrolase activity, acting on ester bonds	2.27E-02
51	GO:0003729: mRNA binding	2.27E-02
52	GO:0061630: ubiquitin protein ligase activity	2.71E-02

Rank	GO Term	Adjusted P value
1	GO:0005773: vacuole	2.22E-04
2	GO:0032586: protein storage vacuole membrane	2.57E-04
3	GO:0016021: integral component of membrane	3.20E-04
4	GO:0034045: pre-autophagosomal structure membrane	7.44E-04
5	GO:0000326: protein storage vacuole	7.44E-04
6	GO:0031090: organelle membrane	8.35E-04
7	GO:0010287: plastoglobule	1.07E-03
8	GO:0005884: actin filament	1.13E-03
9	GO:0030076: light-harvesting complex	1.56E-03
10	GO:0042651: thylakoid membrane	1.92E-03
11	GO:0016020: membrane	2.55E-03
12	GO:0030136: clathrin-coated vesicle	2.57E-03
13	GO:0005770: late endosome	2.84E-03
14	GO:0009522: photosystem I	2.99E-03
15	GO:0009523: photosystem II	3.13E-03
16	GO:0000151: ubiquitin ligase complex	5.05E-03
17	GO:0000325: plant-type vacuole	5.58E-03
18	GO:0009579: thylakoid	8.98E-03
19	GO:0005794: Golgi apparatus	9.10E-03
20	GO:0009706: chloroplast inner membrane	1.12E-02
21	GO:0005802: trans-Golgi network	1.20E-02
22	GO:0009705: plant-type vacuole membrane	1.64E-02
23	GO:0009941: chloroplast envelope	1.77E-02
24	GO:0009506: plasmodesma	1.93E-02
25	GO:0005829: cytosol	2.60E-02
26	GO:0005783: endoplasmic reticulum	2.91E-02
27	GO:0009535: chloroplast thylakoid membrane	3.42E-02
28	GO:0043231: intracellular membrane-bounded organelle	3.70E-02