GO Enrichment Analysis of Co-expressed Genes with
AT1G55480
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 2 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 3 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 4 | GO:0007638: mechanosensory behavior | 0.00E+00 |
| 5 | GO:0080114: positive regulation of glycine hydroxymethyltransferase activity | 0.00E+00 |
| 6 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 7 | GO:0006429: leucyl-tRNA aminoacylation | 0.00E+00 |
| 8 | GO:0015979: photosynthesis | 2.55E-11 |
| 9 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 6.45E-07 |
| 10 | GO:0009658: chloroplast organization | 2.32E-06 |
| 11 | GO:0006000: fructose metabolic process | 2.44E-06 |
| 12 | GO:0006810: transport | 2.86E-06 |
| 13 | GO:0010027: thylakoid membrane organization | 3.38E-06 |
| 14 | GO:0009773: photosynthetic electron transport in photosystem I | 3.48E-06 |
| 15 | GO:0006400: tRNA modification | 5.19E-05 |
| 16 | GO:0032544: plastid translation | 8.55E-05 |
| 17 | GO:0006002: fructose 6-phosphate metabolic process | 8.55E-05 |
| 18 | GO:0009443: pyridoxal 5'-phosphate salvage | 1.12E-04 |
| 19 | GO:0016031: tRNA import into mitochondrion | 1.12E-04 |
| 20 | GO:0006415: translational termination | 1.78E-04 |
| 21 | GO:0018119: peptidyl-cysteine S-nitrosylation | 1.78E-04 |
| 22 | GO:0006094: gluconeogenesis | 2.36E-04 |
| 23 | GO:0009767: photosynthetic electron transport chain | 2.36E-04 |
| 24 | GO:0005986: sucrose biosynthetic process | 2.36E-04 |
| 25 | GO:0097054: L-glutamate biosynthetic process | 2.61E-04 |
| 26 | GO:0019253: reductive pentose-phosphate cycle | 2.68E-04 |
| 27 | GO:0010207: photosystem II assembly | 2.68E-04 |
| 28 | GO:0055114: oxidation-reduction process | 2.69E-04 |
| 29 | GO:0009735: response to cytokinin | 3.42E-04 |
| 30 | GO:0006418: tRNA aminoacylation for protein translation | 4.13E-04 |
| 31 | GO:0009768: photosynthesis, light harvesting in photosystem I | 4.13E-04 |
| 32 | GO:0010581: regulation of starch biosynthetic process | 4.32E-04 |
| 33 | GO:0006433: prolyl-tRNA aminoacylation | 4.32E-04 |
| 34 | GO:0071492: cellular response to UV-A | 4.32E-04 |
| 35 | GO:0006696: ergosterol biosynthetic process | 4.32E-04 |
| 36 | GO:0006081: cellular aldehyde metabolic process | 4.32E-04 |
| 37 | GO:0061077: chaperone-mediated protein folding | 4.53E-04 |
| 38 | GO:0006537: glutamate biosynthetic process | 6.19E-04 |
| 39 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 6.19E-04 |
| 40 | GO:0006020: inositol metabolic process | 6.19E-04 |
| 41 | GO:0007231: osmosensory signaling pathway | 6.19E-04 |
| 42 | GO:0016117: carotenoid biosynthetic process | 6.33E-04 |
| 43 | GO:0015994: chlorophyll metabolic process | 8.23E-04 |
| 44 | GO:0033500: carbohydrate homeostasis | 8.23E-04 |
| 45 | GO:0006021: inositol biosynthetic process | 8.23E-04 |
| 46 | GO:0010109: regulation of photosynthesis | 8.23E-04 |
| 47 | GO:0019676: ammonia assimilation cycle | 8.23E-04 |
| 48 | GO:0071486: cellular response to high light intensity | 8.23E-04 |
| 49 | GO:0045727: positive regulation of translation | 8.23E-04 |
| 50 | GO:0009247: glycolipid biosynthetic process | 1.04E-03 |
| 51 | GO:0080110: sporopollenin biosynthetic process | 1.04E-03 |
| 52 | GO:0032543: mitochondrial translation | 1.04E-03 |
| 53 | GO:0006564: L-serine biosynthetic process | 1.04E-03 |
| 54 | GO:0031365: N-terminal protein amino acid modification | 1.04E-03 |
| 55 | GO:0016554: cytidine to uridine editing | 1.27E-03 |
| 56 | GO:0046855: inositol phosphate dephosphorylation | 1.27E-03 |
| 57 | GO:0033365: protein localization to organelle | 1.27E-03 |
| 58 | GO:0042026: protein refolding | 1.52E-03 |
| 59 | GO:0006458: 'de novo' protein folding | 1.52E-03 |
| 60 | GO:0009854: oxidative photosynthetic carbon pathway | 1.52E-03 |
| 61 | GO:0018298: protein-chromophore linkage | 1.65E-03 |
| 62 | GO:0010196: nonphotochemical quenching | 1.78E-03 |
| 63 | GO:0009645: response to low light intensity stimulus | 1.78E-03 |
| 64 | GO:0009819: drought recovery | 2.06E-03 |
| 65 | GO:0019375: galactolipid biosynthetic process | 2.06E-03 |
| 66 | GO:0009853: photorespiration | 2.08E-03 |
| 67 | GO:0009657: plastid organization | 2.35E-03 |
| 68 | GO:0019430: removal of superoxide radicals | 2.35E-03 |
| 69 | GO:0017004: cytochrome complex assembly | 2.35E-03 |
| 70 | GO:0090305: nucleic acid phosphodiester bond hydrolysis | 2.66E-03 |
| 71 | GO:0010206: photosystem II repair | 2.66E-03 |
| 72 | GO:0000373: Group II intron splicing | 2.66E-03 |
| 73 | GO:0080167: response to karrikin | 2.88E-03 |
| 74 | GO:0009644: response to high light intensity | 2.89E-03 |
| 75 | GO:1900865: chloroplast RNA modification | 2.97E-03 |
| 76 | GO:0010380: regulation of chlorophyll biosynthetic process | 2.97E-03 |
| 77 | GO:0006816: calcium ion transport | 3.65E-03 |
| 78 | GO:0009073: aromatic amino acid family biosynthetic process | 3.65E-03 |
| 79 | GO:0043085: positive regulation of catalytic activity | 3.65E-03 |
| 80 | GO:0000272: polysaccharide catabolic process | 3.65E-03 |
| 81 | GO:0009750: response to fructose | 3.65E-03 |
| 82 | GO:0005983: starch catabolic process | 4.00E-03 |
| 83 | GO:0006790: sulfur compound metabolic process | 4.00E-03 |
| 84 | GO:0005985: sucrose metabolic process | 5.13E-03 |
| 85 | GO:0070588: calcium ion transmembrane transport | 5.13E-03 |
| 86 | GO:0046854: phosphatidylinositol phosphorylation | 5.13E-03 |
| 87 | GO:0016226: iron-sulfur cluster assembly | 7.22E-03 |
| 88 | GO:0007005: mitochondrion organization | 7.22E-03 |
| 89 | GO:0010584: pollen exine formation | 8.13E-03 |
| 90 | GO:0042631: cellular response to water deprivation | 9.08E-03 |
| 91 | GO:0009409: response to cold | 9.33E-03 |
| 92 | GO:0006508: proteolysis | 9.90E-03 |
| 93 | GO:0048544: recognition of pollen | 1.01E-02 |
| 94 | GO:0009791: post-embryonic development | 1.06E-02 |
| 95 | GO:0046686: response to cadmium ion | 1.15E-02 |
| 96 | GO:0019761: glucosinolate biosynthetic process | 1.16E-02 |
| 97 | GO:0015995: chlorophyll biosynthetic process | 1.62E-02 |
| 98 | GO:0016311: dephosphorylation | 1.68E-02 |
| 99 | GO:0009817: defense response to fungus, incompatible interaction | 1.74E-02 |
| 100 | GO:0048481: plant ovule development | 1.74E-02 |
| 101 | GO:0000160: phosphorelay signal transduction system | 1.80E-02 |
| 102 | GO:0009737: response to abscisic acid | 1.85E-02 |
| 103 | GO:0010218: response to far red light | 1.86E-02 |
| 104 | GO:0045454: cell redox homeostasis | 2.03E-02 |
| 105 | GO:0009637: response to blue light | 2.06E-02 |
| 106 | GO:0042742: defense response to bacterium | 2.38E-02 |
| 107 | GO:0032259: methylation | 2.40E-02 |
| 108 | GO:0010114: response to red light | 2.46E-02 |
| 109 | GO:0009744: response to sucrose | 2.46E-02 |
| 110 | GO:0006364: rRNA processing | 3.04E-02 |
| 111 | GO:0009736: cytokinin-activated signaling pathway | 3.04E-02 |
| 112 | GO:0006096: glycolytic process | 3.43E-02 |
| 113 | GO:0048316: seed development | 3.51E-02 |
| 114 | GO:0009553: embryo sac development | 3.83E-02 |
| 115 | GO:0006396: RNA processing | 3.99E-02 |
| 116 | GO:0009416: response to light stimulus | 4.43E-02 |
| 117 | GO:0009611: response to wounding | 4.52E-02 |
| 118 | GO:0009845: seed germination | 4.85E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 2 | GO:0046905: phytoene synthase activity | 0.00E+00 |
| 3 | GO:0033721: aldehyde dehydrogenase (NADP+) activity | 0.00E+00 |
| 4 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 5 | GO:0004823: leucine-tRNA ligase activity | 0.00E+00 |
| 6 | GO:0051738: xanthophyll binding | 0.00E+00 |
| 7 | GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity | 0.00E+00 |
| 8 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
| 9 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 6.45E-07 |
| 10 | GO:0016168: chlorophyll binding | 3.82E-06 |
| 11 | GO:0016149: translation release factor activity, codon specific | 5.76E-06 |
| 12 | GO:0003959: NADPH dehydrogenase activity | 1.80E-05 |
| 13 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 3.84E-05 |
| 14 | GO:0046872: metal ion binding | 6.21E-05 |
| 15 | GO:0003747: translation release factor activity | 1.05E-04 |
| 16 | GO:0051996: squalene synthase activity | 1.12E-04 |
| 17 | GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity | 1.12E-04 |
| 18 | GO:0016041: glutamate synthase (ferredoxin) activity | 1.12E-04 |
| 19 | GO:0016491: oxidoreductase activity | 1.12E-04 |
| 20 | GO:0008934: inositol monophosphate 1-phosphatase activity | 2.61E-04 |
| 21 | GO:0052833: inositol monophosphate 4-phosphatase activity | 2.61E-04 |
| 22 | GO:0008967: phosphoglycolate phosphatase activity | 2.61E-04 |
| 23 | GO:0016630: protochlorophyllide reductase activity | 2.61E-04 |
| 24 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 2.61E-04 |
| 25 | GO:0047746: chlorophyllase activity | 2.61E-04 |
| 26 | GO:0004618: phosphoglycerate kinase activity | 2.61E-04 |
| 27 | GO:0010297: heteropolysaccharide binding | 2.61E-04 |
| 28 | GO:0004617: phosphoglycerate dehydrogenase activity | 2.61E-04 |
| 29 | GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity | 2.61E-04 |
| 30 | GO:0052832: inositol monophosphate 3-phosphatase activity | 2.61E-04 |
| 31 | GO:0031409: pigment binding | 3.37E-04 |
| 32 | GO:0002161: aminoacyl-tRNA editing activity | 4.32E-04 |
| 33 | GO:0004148: dihydrolipoyl dehydrogenase activity | 4.32E-04 |
| 34 | GO:0070402: NADPH binding | 4.32E-04 |
| 35 | GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity | 4.32E-04 |
| 36 | GO:0004324: ferredoxin-NADP+ reductase activity | 4.32E-04 |
| 37 | GO:0004827: proline-tRNA ligase activity | 4.32E-04 |
| 38 | GO:0022891: substrate-specific transmembrane transporter activity | 5.39E-04 |
| 39 | GO:0035250: UDP-galactosyltransferase activity | 6.19E-04 |
| 40 | GO:0004812: aminoacyl-tRNA ligase activity | 6.33E-04 |
| 41 | GO:0050662: coenzyme binding | 7.87E-04 |
| 42 | GO:1990137: plant seed peroxidase activity | 8.23E-04 |
| 43 | GO:0004659: prenyltransferase activity | 8.23E-04 |
| 44 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 8.23E-04 |
| 45 | GO:0048038: quinone binding | 8.98E-04 |
| 46 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.04E-03 |
| 47 | GO:0051538: 3 iron, 4 sulfur cluster binding | 1.04E-03 |
| 48 | GO:0004029: aldehyde dehydrogenase (NAD) activity | 1.27E-03 |
| 49 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 1.52E-03 |
| 50 | GO:0008235: metalloexopeptidase activity | 1.78E-03 |
| 51 | GO:0004033: aldo-keto reductase (NADP) activity | 2.06E-03 |
| 52 | GO:0008135: translation factor activity, RNA binding | 2.35E-03 |
| 53 | GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity | 2.97E-03 |
| 54 | GO:0008047: enzyme activator activity | 3.30E-03 |
| 55 | GO:0015386: potassium:proton antiporter activity | 3.65E-03 |
| 56 | GO:0004177: aminopeptidase activity | 3.65E-03 |
| 57 | GO:0044183: protein binding involved in protein folding | 3.65E-03 |
| 58 | GO:0015266: protein channel activity | 4.36E-03 |
| 59 | GO:0031072: heat shock protein binding | 4.36E-03 |
| 60 | GO:0005262: calcium channel activity | 4.36E-03 |
| 61 | GO:0008266: poly(U) RNA binding | 4.74E-03 |
| 62 | GO:0051082: unfolded protein binding | 5.09E-03 |
| 63 | GO:0005509: calcium ion binding | 5.22E-03 |
| 64 | GO:0051536: iron-sulfur cluster binding | 5.93E-03 |
| 65 | GO:0005528: FK506 binding | 5.93E-03 |
| 66 | GO:0015079: potassium ion transmembrane transporter activity | 6.35E-03 |
| 67 | GO:0004176: ATP-dependent peptidase activity | 6.78E-03 |
| 68 | GO:0003756: protein disulfide isomerase activity | 8.13E-03 |
| 69 | GO:0004791: thioredoxin-disulfide reductase activity | 1.01E-02 |
| 70 | GO:0004518: nuclease activity | 1.16E-02 |
| 71 | GO:0000156: phosphorelay response regulator activity | 1.22E-02 |
| 72 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.22E-02 |
| 73 | GO:0008168: methyltransferase activity | 1.31E-02 |
| 74 | GO:0016597: amino acid binding | 1.38E-02 |
| 75 | GO:0051213: dioxygenase activity | 1.44E-02 |
| 76 | GO:0008236: serine-type peptidase activity | 1.68E-02 |
| 77 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.74E-02 |
| 78 | GO:0016787: hydrolase activity | 1.86E-02 |
| 79 | GO:0004222: metalloendopeptidase activity | 1.86E-02 |
| 80 | GO:0050897: cobalt ion binding | 1.93E-02 |
| 81 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 2.06E-02 |
| 82 | GO:0003746: translation elongation factor activity | 2.06E-02 |
| 83 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.25E-02 |
| 84 | GO:0043621: protein self-association | 2.60E-02 |
| 85 | GO:0003824: catalytic activity | 2.68E-02 |
| 86 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.75E-02 |
| 87 | GO:0051287: NAD binding | 2.82E-02 |
| 88 | GO:0019843: rRNA binding | 4.59E-02 |
| 89 | GO:0004252: serine-type endopeptidase activity | 4.94E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009571: proplastid stroma | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 6.23E-44 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 2.12E-19 |
| 4 | GO:0009941: chloroplast envelope | 1.07E-18 |
| 5 | GO:0009570: chloroplast stroma | 2.30E-18 |
| 6 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 9.43E-09 |
| 7 | GO:0009579: thylakoid | 9.19E-07 |
| 8 | GO:0009534: chloroplast thylakoid | 9.54E-07 |
| 9 | GO:0010287: plastoglobule | 4.95E-06 |
| 10 | GO:0009543: chloroplast thylakoid lumen | 5.68E-06 |
| 11 | GO:0009654: photosystem II oxygen evolving complex | 1.47E-05 |
| 12 | GO:0019898: extrinsic component of membrane | 4.90E-05 |
| 13 | GO:0031969: chloroplast membrane | 5.78E-05 |
| 14 | GO:0010319: stromule | 8.03E-05 |
| 15 | GO:0009782: photosystem I antenna complex | 1.12E-04 |
| 16 | GO:0017101: aminoacyl-tRNA synthetase multienzyme complex | 1.12E-04 |
| 17 | GO:0009344: nitrite reductase complex [NAD(P)H] | 1.12E-04 |
| 18 | GO:0031977: thylakoid lumen | 2.50E-04 |
| 19 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 2.61E-04 |
| 20 | GO:0030095: chloroplast photosystem II | 2.68E-04 |
| 21 | GO:0030076: light-harvesting complex | 3.01E-04 |
| 22 | GO:0048046: apoplast | 3.45E-04 |
| 23 | GO:0009536: plastid | 4.78E-04 |
| 24 | GO:0009706: chloroplast inner membrane | 6.44E-04 |
| 25 | GO:0009517: PSII associated light-harvesting complex II | 8.23E-04 |
| 26 | GO:0009523: photosystem II | 8.42E-04 |
| 27 | GO:0005811: lipid particle | 2.35E-03 |
| 28 | GO:0009508: plastid chromosome | 4.36E-03 |
| 29 | GO:0005759: mitochondrial matrix | 8.01E-03 |
| 30 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 8.13E-03 |
| 31 | GO:0009522: photosystem I | 1.01E-02 |
| 32 | GO:0009295: nucleoid | 1.33E-02 |
| 33 | GO:0005778: peroxisomal membrane | 1.33E-02 |
| 34 | GO:0030529: intracellular ribonucleoprotein complex | 1.44E-02 |
| 35 | GO:0005747: mitochondrial respiratory chain complex I | 3.51E-02 |