co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G55330

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015739: sialic acid transport	0.00E+00
2	GO:0033494: ferulate metabolic process	0.00E+00
3	GO:0045176: apical protein localization	0.00E+00
4	GO:0007638: mechanosensory behavior	0.00E+00
5	GO:0042493: response to drug	0.00E+00
6	GO:0042254: ribosome biogenesis	2.36E-07
7	GO:0015976: carbon utilization	6.54E-07
8	GO:0071555: cell wall organization	1.17E-05
9	GO:0006412: translation	6.54E-05
10	GO:0010037: response to carbon dioxide	7.72E-05
11	GO:2000122: negative regulation of stomatal complex development	7.72E-05
12	GO:0009725: response to hormone	7.84E-05
13	GO:0006869: lipid transport	1.06E-04
14	GO:0010411: xyloglucan metabolic process	1.21E-04
15	GO:0006833: water transport	1.32E-04
16	GO:0006810: transport	2.25E-04
17	GO:0042371: vitamin K biosynthetic process	3.52E-04
18	GO:0071588: hydrogen peroxide mediated signaling pathway	3.52E-04
19	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	3.52E-04
20	GO:0060627: regulation of vesicle-mediated transport	3.52E-04
21	GO:0046520: sphingoid biosynthetic process	3.52E-04
22	GO:1904966: positive regulation of vitamin E biosynthetic process	3.52E-04
23	GO:0071370: cellular response to gibberellin stimulus	3.52E-04
24	GO:1904964: positive regulation of phytol biosynthetic process	3.52E-04
25	GO:0042546: cell wall biogenesis	3.55E-04
26	GO:0000413: protein peptidyl-prolyl isomerization	3.63E-04
27	GO:0042335: cuticle development	3.63E-04
28	GO:0015979: photosynthesis	3.93E-04
29	GO:0007267: cell-cell signaling	7.28E-04
30	GO:2000123: positive regulation of stomatal complex development	7.67E-04
31	GO:0006695: cholesterol biosynthetic process	7.67E-04
32	GO:1902326: positive regulation of chlorophyll biosynthetic process	7.67E-04
33	GO:0009773: photosynthetic electron transport in photosystem I	8.95E-04
34	GO:0006696: ergosterol biosynthetic process	1.24E-03
35	GO:0006518: peptide metabolic process	1.24E-03
36	GO:0015840: urea transport	1.24E-03
37	GO:0006636: unsaturated fatty acid biosynthetic process	1.62E-03
38	GO:0009735: response to cytokinin	1.73E-03
39	GO:0007231: osmosensory signaling pathway	1.79E-03
40	GO:0051639: actin filament network formation	1.79E-03
41	GO:0006241: CTP biosynthetic process	1.79E-03
42	GO:0009650: UV protection	1.79E-03
43	GO:0006165: nucleoside diphosphate phosphorylation	1.79E-03
44	GO:0006228: UTP biosynthetic process	1.79E-03
45	GO:0045490: pectin catabolic process	2.09E-03
46	GO:0061077: chaperone-mediated protein folding	2.18E-03
47	GO:0051764: actin crosslink formation	2.40E-03
48	GO:0009765: photosynthesis, light harvesting	2.40E-03
49	GO:0006183: GTP biosynthetic process	2.40E-03
50	GO:0033500: carbohydrate homeostasis	2.40E-03
51	GO:2000038: regulation of stomatal complex development	2.40E-03
52	GO:0019722: calcium-mediated signaling	2.82E-03
53	GO:0016123: xanthophyll biosynthetic process	3.07E-03
54	GO:0010375: stomatal complex patterning	3.07E-03
55	GO:0046785: microtubule polymerization	3.07E-03
56	GO:0016120: carotene biosynthetic process	3.07E-03
57	GO:0034220: ion transmembrane transport	3.31E-03
58	GO:0048827: phyllome development	3.79E-03
59	GO:0042549: photosystem II stabilization	3.79E-03
60	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.79E-03
61	GO:0016554: cytidine to uridine editing	3.79E-03
62	GO:0010190: cytochrome b6f complex assembly	3.79E-03
63	GO:0071554: cell wall organization or biogenesis	4.40E-03
64	GO:0010019: chloroplast-nucleus signaling pathway	4.57E-03
65	GO:0010555: response to mannitol	4.57E-03
66	GO:0009955: adaxial/abaxial pattern specification	4.57E-03
67	GO:0042372: phylloquinone biosynthetic process	4.57E-03
68	GO:0009612: response to mechanical stimulus	4.57E-03
69	GO:1901259: chloroplast rRNA processing	4.57E-03
70	GO:0006694: steroid biosynthetic process	4.57E-03
71	GO:0010583: response to cyclopentenone	4.70E-03
72	GO:0009409: response to cold	5.23E-03
73	GO:0030497: fatty acid elongation	5.40E-03
74	GO:0009645: response to low light intensity stimulus	5.40E-03
75	GO:0030091: protein repair	6.27E-03
76	GO:0009642: response to light intensity	6.27E-03
77	GO:0046620: regulation of organ growth	6.27E-03
78	GO:0042128: nitrate assimilation	7.12E-03
79	GO:0009808: lignin metabolic process	7.19E-03
80	GO:0009932: cell tip growth	7.19E-03
81	GO:0032544: plastid translation	7.19E-03
82	GO:0009416: response to light stimulus	7.24E-03
83	GO:0045454: cell redox homeostasis	7.44E-03
84	GO:0015780: nucleotide-sugar transport	8.16E-03
85	GO:0045337: farnesyl diphosphate biosynthetic process	8.16E-03
86	GO:0010206: photosystem II repair	8.16E-03
87	GO:0033384: geranyl diphosphate biosynthetic process	8.16E-03
88	GO:0042742: defense response to bacterium	8.30E-03
89	GO:0018298: protein-chromophore linkage	8.33E-03
90	GO:0000160: phosphorelay signal transduction system	8.75E-03
91	GO:0006633: fatty acid biosynthetic process	8.91E-03
92	GO:0010205: photoinhibition	9.17E-03
93	GO:1900865: chloroplast RNA modification	9.17E-03
94	GO:0010119: regulation of stomatal movement	9.64E-03
95	GO:0043069: negative regulation of programmed cell death	1.02E-02
96	GO:0006949: syncytium formation	1.02E-02
97	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.02E-02
98	GO:0055085: transmembrane transport	1.10E-02
99	GO:0034599: cellular response to oxidative stress	1.11E-02
100	GO:0000038: very long-chain fatty acid metabolic process	1.13E-02
101	GO:0006816: calcium ion transport	1.13E-02
102	GO:0019684: photosynthesis, light reaction	1.13E-02
103	GO:0009089: lysine biosynthetic process via diaminopimelate	1.13E-02
104	GO:0043085: positive regulation of catalytic activity	1.13E-02
105	GO:1903507: negative regulation of nucleic acid-templated transcription	1.13E-02
106	GO:0006790: sulfur compound metabolic process	1.25E-02
107	GO:0006631: fatty acid metabolic process	1.26E-02
108	GO:0010229: inflorescence development	1.37E-02
109	GO:0050826: response to freezing	1.37E-02
110	GO:0009744: response to sucrose	1.37E-02
111	GO:0006006: glucose metabolic process	1.37E-02
112	GO:0008643: carbohydrate transport	1.48E-02
113	GO:0010540: basipetal auxin transport	1.49E-02
114	GO:0010143: cutin biosynthetic process	1.49E-02
115	GO:0010207: photosystem II assembly	1.49E-02
116	GO:0019253: reductive pentose-phosphate cycle	1.49E-02
117	GO:0070588: calcium ion transmembrane transport	1.61E-02
118	GO:0046854: phosphatidylinositol phosphorylation	1.61E-02
119	GO:0010167: response to nitrate	1.61E-02
120	GO:0005985: sucrose metabolic process	1.61E-02
121	GO:0009826: unidimensional cell growth	1.67E-02
122	GO:0042538: hyperosmotic salinity response	1.72E-02
123	GO:0019762: glucosinolate catabolic process	1.74E-02
124	GO:0010025: wax biosynthetic process	1.74E-02
125	GO:0009736: cytokinin-activated signaling pathway	1.85E-02
126	GO:0019344: cysteine biosynthetic process	1.88E-02
127	GO:0000027: ribosomal large subunit assembly	1.88E-02
128	GO:0051017: actin filament bundle assembly	1.88E-02
129	GO:0006857: oligopeptide transport	1.98E-02
130	GO:0007017: microtubule-based process	2.01E-02
131	GO:0009768: photosynthesis, light harvesting in photosystem I	2.01E-02
132	GO:0031408: oxylipin biosynthetic process	2.15E-02
133	GO:0080092: regulation of pollen tube growth	2.29E-02
134	GO:0019748: secondary metabolic process	2.29E-02
135	GO:0030245: cellulose catabolic process	2.29E-02
136	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.29E-02
137	GO:0055114: oxidation-reduction process	2.36E-02
138	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.44E-02
139	GO:0009294: DNA mediated transformation	2.44E-02
140	GO:0009411: response to UV	2.44E-02
141	GO:0042545: cell wall modification	2.55E-02
142	GO:0006284: base-excision repair	2.59E-02
143	GO:0016117: carotenoid biosynthetic process	2.74E-02
144	GO:0000271: polysaccharide biosynthetic process	2.90E-02
145	GO:0080022: primary root development	2.90E-02
146	GO:0045489: pectin biosynthetic process	3.06E-02
147	GO:0006662: glycerol ether metabolic process	3.06E-02
148	GO:0048825: cotyledon development	3.39E-02
149	GO:0016132: brassinosteroid biosynthetic process	3.55E-02
150	GO:0002229: defense response to oomycetes	3.55E-02
151	GO:0000302: response to reactive oxygen species	3.55E-02
152	GO:1901657: glycosyl compound metabolic process	3.90E-02
153	GO:0010090: trichome morphogenesis	3.90E-02
154	GO:0009828: plant-type cell wall loosening	4.07E-02
155	GO:0016126: sterol biosynthetic process	4.62E-02
156	GO:0009911: positive regulation of flower development	4.62E-02
157	GO:0010027: thylakoid membrane organization	4.62E-02
158	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
2	GO:0047889: ferredoxin-nitrate reductase activity	0.00E+00
3	GO:0050614: delta24-sterol reductase activity	0.00E+00
4	GO:0005456: CMP-N-acetylneuraminate transmembrane transporter activity	0.00E+00
5	GO:0048307: ferredoxin-nitrite reductase activity	0.00E+00
6	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
7	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
8	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
9	GO:0015136: sialic acid transmembrane transporter activity	0.00E+00
10	GO:0050421: nitrite reductase (NO-forming) activity	0.00E+00
11	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
12	GO:0019843: rRNA binding	1.43E-11
13	GO:0003735: structural constituent of ribosome	2.91E-07
14	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.52E-06
15	GO:0051920: peroxiredoxin activity	4.90E-06
16	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.17E-05
17	GO:0016209: antioxidant activity	1.18E-05
18	GO:0016762: xyloglucan:xyloglucosyl transferase activity	4.41E-05
19	GO:0008289: lipid binding	6.71E-05
20	GO:0004089: carbonate dehydratase activity	7.84E-05
21	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.21E-04
22	GO:0005528: FK506 binding	1.54E-04
23	GO:0051753: mannan synthase activity	2.36E-04
24	GO:0000170: sphingosine hydroxylase activity	3.52E-04
25	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	3.52E-04
26	GO:0080132: fatty acid alpha-hydroxylase activity	3.52E-04
27	GO:0003838: sterol 24-C-methyltransferase activity	3.52E-04
28	GO:0015200: methylammonium transmembrane transporter activity	3.52E-04
29	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	4.70E-04
30	GO:0042389: omega-3 fatty acid desaturase activity	7.67E-04
31	GO:0042284: sphingolipid delta-4 desaturase activity	7.67E-04
32	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	7.67E-04
33	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	7.67E-04
34	GO:0015250: water channel activity	8.42E-04
35	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.24E-03
36	GO:0050734: hydroxycinnamoyltransferase activity	1.24E-03
37	GO:0005504: fatty acid binding	1.24E-03
38	GO:0030267: glyoxylate reductase (NADP) activity	1.24E-03
39	GO:0001872: (1->3)-beta-D-glucan binding	1.79E-03
40	GO:0004550: nucleoside diphosphate kinase activity	1.79E-03
41	GO:0015204: urea transmembrane transporter activity	2.40E-03
42	GO:0045430: chalcone isomerase activity	2.40E-03
43	GO:0043495: protein anchor	2.40E-03
44	GO:0030570: pectate lyase activity	2.60E-03
45	GO:0008725: DNA-3-methyladenine glycosylase activity	3.07E-03
46	GO:0009922: fatty acid elongase activity	3.07E-03
47	GO:0008200: ion channel inhibitor activity	3.79E-03
48	GO:0008519: ammonium transmembrane transporter activity	3.79E-03
49	GO:0004130: cytochrome-c peroxidase activity	3.79E-03
50	GO:0016208: AMP binding	3.79E-03
51	GO:0016688: L-ascorbate peroxidase activity	3.79E-03
52	GO:0004872: receptor activity	4.11E-03
53	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	4.57E-03
54	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.57E-03
55	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	4.57E-03
56	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	4.57E-03
57	GO:0030599: pectinesterase activity	4.63E-03
58	GO:0000156: phosphorelay response regulator activity	5.01E-03
59	GO:0005338: nucleotide-sugar transmembrane transporter activity	5.40E-03
60	GO:0019899: enzyme binding	5.40E-03
61	GO:0016722: oxidoreductase activity, oxidizing metal ions	5.67E-03
62	GO:0016413: O-acetyltransferase activity	6.02E-03
63	GO:0004564: beta-fructofuranosidase activity	6.27E-03
64	GO:0030674: protein binding, bridging	6.27E-03
65	GO:0052689: carboxylic ester hydrolase activity	6.59E-03
66	GO:0016168: chlorophyll binding	6.74E-03
67	GO:0102483: scopolin beta-glucosidase activity	7.51E-03
68	GO:0004871: signal transducer activity	7.99E-03
69	GO:0004337: geranyltranstransferase activity	8.16E-03
70	GO:0004575: sucrose alpha-glucosidase activity	9.17E-03
71	GO:0008047: enzyme activator activity	1.02E-02
72	GO:0004161: dimethylallyltranstransferase activity	1.13E-02
73	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.13E-02
74	GO:0008422: beta-glucosidase activity	1.16E-02
75	GO:0042802: identical protein binding	1.36E-02
76	GO:0031072: heat shock protein binding	1.37E-02
77	GO:0004185: serine-type carboxypeptidase activity	1.37E-02
78	GO:0005262: calcium channel activity	1.37E-02
79	GO:0031409: pigment binding	1.74E-02
80	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.74E-02
81	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.74E-02
82	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.74E-02
83	GO:0004601: peroxidase activity	1.75E-02
84	GO:0004857: enzyme inhibitor activity	1.88E-02
85	GO:0003714: transcription corepressor activity	1.88E-02
86	GO:0043424: protein histidine kinase binding	2.01E-02
87	GO:0008324: cation transmembrane transporter activity	2.01E-02
88	GO:0045330: aspartyl esterase activity	2.05E-02
89	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.29E-02
90	GO:0004650: polygalacturonase activity	2.40E-02
91	GO:0022891: substrate-specific transmembrane transporter activity	2.44E-02
92	GO:0008810: cellulase activity	2.44E-02
93	GO:0008514: organic anion transmembrane transporter activity	2.59E-02
94	GO:0047134: protein-disulfide reductase activity	2.74E-02
95	GO:0004791: thioredoxin-disulfide reductase activity	3.22E-02
96	GO:0019901: protein kinase binding	3.39E-02
97	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.90E-02
98	GO:0051015: actin filament binding	3.90E-02
99	GO:0016759: cellulose synthase activity	4.07E-02
100	GO:0005200: structural constituent of cytoskeleton	4.25E-02
101	GO:0005516: calmodulin binding	4.39E-02
102	GO:0008017: microtubule binding	4.74E-02
103	GO:0009931: calcium-dependent protein serine/threonine kinase activity	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009507: chloroplast	3.62E-19
3	GO:0009535: chloroplast thylakoid membrane	3.44E-15
4	GO:0009543: chloroplast thylakoid lumen	1.80E-14
5	GO:0048046: apoplast	6.51E-14
6	GO:0009570: chloroplast stroma	4.82E-12
7	GO:0009579: thylakoid	7.44E-12
8	GO:0009941: chloroplast envelope	5.41E-11
9	GO:0031977: thylakoid lumen	8.49E-11
10	GO:0046658: anchored component of plasma membrane	7.03E-09
11	GO:0009505: plant-type cell wall	1.50E-08
12	GO:0005840: ribosome	4.01E-08
13	GO:0031225: anchored component of membrane	5.53E-08
14	GO:0005618: cell wall	7.34E-07
15	GO:0005576: extracellular region	3.14E-05
16	GO:0009534: chloroplast thylakoid	4.94E-05
17	GO:0009654: photosystem II oxygen evolving complex	1.78E-04
18	GO:0019898: extrinsic component of membrane	4.83E-04
19	GO:0016020: membrane	5.02E-04
20	GO:0005886: plasma membrane	5.47E-04
21	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.65E-04
22	GO:0010319: stromule	7.28E-04
23	GO:0042170: plastid membrane	7.67E-04
24	GO:0000311: plastid large ribosomal subunit	1.02E-03
25	GO:0030095: chloroplast photosystem II	1.30E-03
26	GO:0015934: large ribosomal subunit	1.40E-03
27	GO:0005775: vacuolar lumen	1.79E-03
28	GO:0032432: actin filament bundle	1.79E-03
29	GO:0009506: plasmodesma	2.54E-03
30	GO:0009533: chloroplast stromal thylakoid	5.40E-03
31	GO:0042807: central vacuole	5.40E-03
32	GO:0031969: chloroplast membrane	5.66E-03
33	GO:0000326: protein storage vacuole	7.19E-03
34	GO:0005763: mitochondrial small ribosomal subunit	8.16E-03
35	GO:0045298: tubulin complex	8.16E-03
36	GO:0055028: cortical microtubule	1.02E-02
37	GO:0016324: apical plasma membrane	1.02E-02
38	GO:0005884: actin filament	1.13E-02
39	GO:0031012: extracellular matrix	1.37E-02
40	GO:0000139: Golgi membrane	1.49E-02
41	GO:0030076: light-harvesting complex	1.61E-02
42	GO:0005887: integral component of plasma membrane	1.62E-02
43	GO:0005875: microtubule associated complex	1.74E-02
44	GO:0005758: mitochondrial intermembrane space	1.88E-02
45	GO:0042651: thylakoid membrane	2.01E-02
46	GO:0005874: microtubule	2.20E-02
47	GO:0022626: cytosolic ribosome	2.27E-02
48	GO:0005770: late endosome	3.06E-02
49	GO:0010287: plastoglobule	3.12E-02
50	GO:0009522: photosystem I	3.22E-02
51	GO:0016021: integral component of membrane	3.22E-02
52	GO:0009523: photosystem II	3.39E-02
53	GO:0005773: vacuole	4.10E-02
54	GO:0005778: peroxisomal membrane	4.25E-02
55	GO:0005789: endoplasmic reticulum membrane	4.90E-02