co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G54820

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
2	GO:0090470: shoot organ boundary specification	0.00E+00
3	GO:0016553: base conversion or substitution editing	0.00E+00
4	GO:0090627: plant epidermal cell differentiation	0.00E+00
5	GO:0042493: response to drug	0.00E+00
6	GO:0034337: RNA folding	0.00E+00
7	GO:2000505: regulation of energy homeostasis	0.00E+00
8	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
9	GO:0015979: photosynthesis	4.25E-08
10	GO:0009773: photosynthetic electron transport in photosystem I	4.97E-08
11	GO:0010207: photosystem II assembly	7.00E-06
12	GO:0010027: thylakoid membrane organization	1.35E-05
13	GO:0010196: nonphotochemical quenching	1.48E-05
14	GO:0009772: photosynthetic electron transport in photosystem II	1.48E-05
15	GO:0015995: chlorophyll biosynthetic process	2.02E-05
16	GO:0090391: granum assembly	3.12E-05
17	GO:0010206: photosystem II repair	4.26E-05
18	GO:0010205: photoinhibition	5.62E-05
19	GO:0009735: response to cytokinin	6.99E-05
20	GO:0016024: CDP-diacylglycerol biosynthetic process	1.12E-04
21	GO:0009913: epidermal cell differentiation	2.58E-04
22	GO:0006655: phosphatidylglycerol biosynthetic process	2.58E-04
23	GO:0042549: photosystem II stabilization	2.58E-04
24	GO:1901259: chloroplast rRNA processing	3.46E-04
25	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	4.29E-04
26	GO:0042254: ribosome biogenesis	4.36E-04
27	GO:0043489: RNA stabilization	4.53E-04
28	GO:0000481: maturation of 5S rRNA	4.53E-04
29	GO:0042371: vitamin K biosynthetic process	4.53E-04
30	GO:0006106: fumarate metabolic process	4.53E-04
31	GO:0071588: hydrogen peroxide mediated signaling pathway	4.53E-04
32	GO:0042335: cuticle development	5.88E-04
33	GO:0032544: plastid translation	6.77E-04
34	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	6.97E-04
35	GO:0009664: plant-type cell wall organization	8.51E-04
36	GO:0035304: regulation of protein dephosphorylation	9.79E-04
37	GO:0043255: regulation of carbohydrate biosynthetic process	9.79E-04
38	GO:0010115: regulation of abscisic acid biosynthetic process	9.79E-04
39	GO:0006898: receptor-mediated endocytosis	9.79E-04
40	GO:0010541: acropetal auxin transport	9.79E-04
41	GO:0034755: iron ion transmembrane transport	9.79E-04
42	GO:0001736: establishment of planar polarity	9.79E-04
43	GO:0010024: phytochromobilin biosynthetic process	9.79E-04
44	GO:0009828: plant-type cell wall loosening	1.08E-03
45	GO:0016042: lipid catabolic process	1.33E-03
46	GO:0015714: phosphoenolpyruvate transport	1.59E-03
47	GO:0006518: peptide metabolic process	1.59E-03
48	GO:0016045: detection of bacterium	1.59E-03
49	GO:0006788: heme oxidation	1.59E-03
50	GO:0010359: regulation of anion channel activity	1.59E-03
51	GO:0010160: formation of animal organ boundary	1.59E-03
52	GO:0080055: low-affinity nitrate transport	1.59E-03
53	GO:0010167: response to nitrate	2.11E-03
54	GO:0009631: cold acclimation	2.27E-03
55	GO:0009800: cinnamic acid biosynthetic process	2.31E-03
56	GO:0080170: hydrogen peroxide transmembrane transport	2.31E-03
57	GO:0009650: UV protection	2.31E-03
58	GO:0043481: anthocyanin accumulation in tissues in response to UV light	2.31E-03
59	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.31E-03
60	GO:1901332: negative regulation of lateral root development	2.31E-03
61	GO:0010371: regulation of gibberellin biosynthetic process	2.31E-03
62	GO:0051513: regulation of monopolar cell growth	2.31E-03
63	GO:0071484: cellular response to light intensity	2.31E-03
64	GO:0051639: actin filament network formation	2.31E-03
65	GO:0010239: chloroplast mRNA processing	2.31E-03
66	GO:0006636: unsaturated fatty acid biosynthetic process	2.35E-03
67	GO:0080167: response to karrikin	2.60E-03
68	GO:0051017: actin filament bundle assembly	2.61E-03
69	GO:0030104: water homeostasis	3.10E-03
70	GO:0015713: phosphoglycerate transport	3.10E-03
71	GO:0010109: regulation of photosynthesis	3.10E-03
72	GO:0051764: actin crosslink formation	3.10E-03
73	GO:0045727: positive regulation of translation	3.10E-03
74	GO:0015994: chlorophyll metabolic process	3.10E-03
75	GO:0016998: cell wall macromolecule catabolic process	3.17E-03
76	GO:0045490: pectin catabolic process	3.73E-03
77	GO:0006564: L-serine biosynthetic process	3.98E-03
78	GO:0010236: plastoquinone biosynthetic process	3.98E-03
79	GO:0010438: cellular response to sulfur starvation	3.98E-03
80	GO:0009306: protein secretion	4.12E-03
81	GO:0006869: lipid transport	4.20E-03
82	GO:0009416: response to light stimulus	4.40E-03
83	GO:0009409: response to cold	4.41E-03
84	GO:0080022: primary root development	4.82E-03
85	GO:0034220: ion transmembrane transport	4.82E-03
86	GO:0060918: auxin transport	4.92E-03
87	GO:0006559: L-phenylalanine catabolic process	4.92E-03
88	GO:0010337: regulation of salicylic acid metabolic process	4.92E-03
89	GO:0009759: indole glucosinolate biosynthetic process	4.92E-03
90	GO:0006561: proline biosynthetic process	4.92E-03
91	GO:0006751: glutathione catabolic process	4.92E-03
92	GO:0000470: maturation of LSU-rRNA	4.92E-03
93	GO:0009958: positive gravitropism	5.20E-03
94	GO:0010305: leaf vascular tissue pattern formation	5.20E-03
95	GO:0042372: phylloquinone biosynthetic process	5.94E-03
96	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	5.94E-03
97	GO:0017148: negative regulation of translation	5.94E-03
98	GO:0010019: chloroplast-nucleus signaling pathway	5.94E-03
99	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	5.94E-03
100	GO:0000302: response to reactive oxygen species	6.43E-03
101	GO:1900057: positive regulation of leaf senescence	7.03E-03
102	GO:0010444: guard mother cell differentiation	7.03E-03
103	GO:0009395: phospholipid catabolic process	7.03E-03
104	GO:1900056: negative regulation of leaf senescence	7.03E-03
105	GO:0009733: response to auxin	7.97E-03
106	GO:0009624: response to nematode	8.11E-03
107	GO:0008610: lipid biosynthetic process	8.18E-03
108	GO:0006605: protein targeting	8.18E-03
109	GO:0006353: DNA-templated transcription, termination	8.18E-03
110	GO:0032508: DNA duplex unwinding	8.18E-03
111	GO:0010492: maintenance of shoot apical meristem identity	8.18E-03
112	GO:0031540: regulation of anthocyanin biosynthetic process	8.18E-03
113	GO:0055075: potassium ion homeostasis	8.18E-03
114	GO:0009734: auxin-activated signaling pathway	9.40E-03
115	GO:0006412: translation	9.96E-03
116	GO:0009627: systemic acquired resistance	1.04E-02
117	GO:0034765: regulation of ion transmembrane transport	1.07E-02
118	GO:0048507: meristem development	1.07E-02
119	GO:0009245: lipid A biosynthetic process	1.07E-02
120	GO:0009638: phototropism	1.20E-02
121	GO:0010311: lateral root formation	1.28E-02
122	GO:0042744: hydrogen peroxide catabolic process	1.28E-02
123	GO:0006032: chitin catabolic process	1.34E-02
124	GO:0009688: abscisic acid biosynthetic process	1.34E-02
125	GO:0048829: root cap development	1.34E-02
126	GO:0006949: syncytium formation	1.34E-02
127	GO:0006633: fatty acid biosynthetic process	1.45E-02
128	GO:0019684: photosynthesis, light reaction	1.48E-02
129	GO:0052544: defense response by callose deposition in cell wall	1.48E-02
130	GO:0008285: negative regulation of cell proliferation	1.48E-02
131	GO:1903507: negative regulation of nucleic acid-templated transcription	1.48E-02
132	GO:0006879: cellular iron ion homeostasis	1.48E-02
133	GO:0009750: response to fructose	1.48E-02
134	GO:0018119: peptidyl-cysteine S-nitrosylation	1.48E-02
135	GO:0048765: root hair cell differentiation	1.48E-02
136	GO:0046856: phosphatidylinositol dephosphorylation	1.48E-02
137	GO:0010015: root morphogenesis	1.48E-02
138	GO:0000038: very long-chain fatty acid metabolic process	1.48E-02
139	GO:0005975: carbohydrate metabolic process	1.51E-02
140	GO:0034599: cellular response to oxidative stress	1.62E-02
141	GO:0015706: nitrate transport	1.63E-02
142	GO:0007623: circadian rhythm	1.63E-02
143	GO:0002213: defense response to insect	1.63E-02
144	GO:0008361: regulation of cell size	1.63E-02
145	GO:0030001: metal ion transport	1.77E-02
146	GO:0010588: cotyledon vascular tissue pattern formation	1.79E-02
147	GO:0010102: lateral root morphogenesis	1.79E-02
148	GO:0010628: positive regulation of gene expression	1.79E-02
149	GO:0009785: blue light signaling pathway	1.79E-02
150	GO:0006108: malate metabolic process	1.79E-02
151	GO:0006006: glucose metabolic process	1.79E-02
152	GO:0010229: inflorescence development	1.79E-02
153	GO:0009718: anthocyanin-containing compound biosynthetic process	1.79E-02
154	GO:0019253: reductive pentose-phosphate cycle	1.95E-02
155	GO:0010540: basipetal auxin transport	1.95E-02
156	GO:0048467: gynoecium development	1.95E-02
157	GO:0010143: cutin biosynthetic process	1.95E-02
158	GO:0009640: photomorphogenesis	2.00E-02
159	GO:0009926: auxin polar transport	2.00E-02
160	GO:0009825: multidimensional cell growth	2.12E-02
161	GO:0071732: cellular response to nitric oxide	2.12E-02
162	GO:0010030: positive regulation of seed germination	2.12E-02
163	GO:0010053: root epidermal cell differentiation	2.12E-02
164	GO:0010025: wax biosynthetic process	2.29E-02
165	GO:0042023: DNA endoreduplication	2.29E-02
166	GO:0006833: water transport	2.29E-02
167	GO:0000162: tryptophan biosynthetic process	2.29E-02
168	GO:0000027: ribosomal large subunit assembly	2.46E-02
169	GO:2000377: regulation of reactive oxygen species metabolic process	2.46E-02
170	GO:0007017: microtubule-based process	2.64E-02
171	GO:0010073: meristem maintenance	2.64E-02
172	GO:0019953: sexual reproduction	2.64E-02
173	GO:0009826: unidimensional cell growth	2.70E-02
174	GO:0006364: rRNA processing	2.70E-02
175	GO:0031408: oxylipin biosynthetic process	2.82E-02
176	GO:0003333: amino acid transmembrane transport	2.82E-02
177	GO:0048511: rhythmic process	2.82E-02
178	GO:0009658: chloroplast organization	2.83E-02
179	GO:0006857: oligopeptide transport	2.90E-02
180	GO:2000022: regulation of jasmonic acid mediated signaling pathway	3.01E-02
181	GO:0035428: hexose transmembrane transport	3.01E-02
182	GO:0009411: response to UV	3.20E-02
183	GO:0071369: cellular response to ethylene stimulus	3.20E-02
184	GO:0010227: floral organ abscission	3.20E-02
185	GO:0048443: stamen development	3.40E-02
186	GO:0006284: base-excision repair	3.40E-02
187	GO:0042127: regulation of cell proliferation	3.40E-02
188	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	3.60E-02
189	GO:0042391: regulation of membrane potential	3.81E-02
190	GO:0010087: phloem or xylem histogenesis	3.81E-02
191	GO:0042631: cellular response to water deprivation	3.81E-02
192	GO:0071472: cellular response to salt stress	4.01E-02
193	GO:0010182: sugar mediated signaling pathway	4.01E-02
194	GO:0046323: glucose import	4.01E-02
195	GO:0051726: regulation of cell cycle	4.07E-02
196	GO:0015986: ATP synthesis coupled proton transport	4.23E-02
197	GO:0042752: regulation of circadian rhythm	4.23E-02
198	GO:0048825: cotyledon development	4.44E-02
199	GO:0016032: viral process	4.88E-02
200	GO:0009630: gravitropism	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
2	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
3	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
4	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
5	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
6	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
7	GO:0005528: FK506 binding	8.73E-09
8	GO:0019843: rRNA binding	3.97E-08
9	GO:0016851: magnesium chelatase activity	4.48E-07
10	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.05E-05
11	GO:0008266: poly(U) RNA binding	1.63E-04
12	GO:0004130: cytochrome-c peroxidase activity	2.58E-04
13	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.58E-04
14	GO:0030570: pectate lyase activity	4.29E-04
15	GO:0016788: hydrolase activity, acting on ester bonds	4.36E-04
16	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	4.53E-04
17	GO:0010242: oxygen evolving activity	4.53E-04
18	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	4.53E-04
19	GO:0045485: omega-6 fatty acid desaturase activity	4.53E-04
20	GO:0004333: fumarate hydratase activity	4.53E-04
21	GO:0030794: (S)-coclaurine-N-methyltransferase activity	4.53E-04
22	GO:0003735: structural constituent of ribosome	6.06E-04
23	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	9.79E-04
24	GO:0047746: chlorophyllase activity	9.79E-04
25	GO:0003839: gamma-glutamylcyclotransferase activity	9.79E-04
26	GO:0004617: phosphoglycerate dehydrogenase activity	9.79E-04
27	GO:0090729: toxin activity	1.59E-03
28	GO:0045548: phenylalanine ammonia-lyase activity	1.59E-03
29	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.59E-03
30	GO:0080054: low-affinity nitrate transmembrane transporter activity	1.59E-03
31	GO:0004565: beta-galactosidase activity	1.67E-03
32	GO:0016746: transferase activity, transferring acyl groups	1.69E-03
33	GO:0043023: ribosomal large subunit binding	2.31E-03
34	GO:0001872: (1->3)-beta-D-glucan binding	2.31E-03
35	GO:0016829: lyase activity	2.57E-03
36	GO:0010328: auxin influx transmembrane transporter activity	3.10E-03
37	GO:0004392: heme oxygenase (decyclizing) activity	3.10E-03
38	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	3.10E-03
39	GO:0015120: phosphoglycerate transmembrane transporter activity	3.10E-03
40	GO:0004659: prenyltransferase activity	3.10E-03
41	GO:0052689: carboxylic ester hydrolase activity	3.10E-03
42	GO:0010011: auxin binding	3.10E-03
43	GO:0008725: DNA-3-methyladenine glycosylase activity	3.98E-03
44	GO:0004629: phospholipase C activity	4.92E-03
45	GO:0031177: phosphopantetheine binding	4.92E-03
46	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	4.92E-03
47	GO:0042578: phosphoric ester hydrolase activity	4.92E-03
48	GO:0016688: L-ascorbate peroxidase activity	4.92E-03
49	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	4.92E-03
50	GO:0004017: adenylate kinase activity	5.94E-03
51	GO:0016832: aldehyde-lyase activity	5.94E-03
52	GO:0000035: acyl binding	5.94E-03
53	GO:0004435: phosphatidylinositol phospholipase C activity	5.94E-03
54	GO:0005242: inward rectifier potassium channel activity	5.94E-03
55	GO:0051015: actin filament binding	7.33E-03
56	GO:0005515: protein binding	7.64E-03
57	GO:0016791: phosphatase activity	7.80E-03
58	GO:0043022: ribosome binding	8.18E-03
59	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	8.18E-03
60	GO:0016597: amino acid binding	8.80E-03
61	GO:0008289: lipid binding	9.20E-03
62	GO:0015250: water channel activity	9.33E-03
63	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	9.38E-03
64	GO:0030247: polysaccharide binding	1.10E-02
65	GO:0005381: iron ion transmembrane transporter activity	1.20E-02
66	GO:0015112: nitrate transmembrane transporter activity	1.20E-02
67	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.22E-02
68	GO:0004568: chitinase activity	1.34E-02
69	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	1.35E-02
70	GO:0004871: signal transducer activity	1.42E-02
71	GO:0008794: arsenate reductase (glutaredoxin) activity	1.48E-02
72	GO:0047372: acylglycerol lipase activity	1.48E-02
73	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.49E-02
74	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	1.63E-02
75	GO:0010329: auxin efflux transmembrane transporter activity	1.79E-02
76	GO:0004022: alcohol dehydrogenase (NAD) activity	1.79E-02
77	GO:0031072: heat shock protein binding	1.79E-02
78	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.21E-02
79	GO:0015293: symporter activity	2.25E-02
80	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	2.29E-02
81	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	2.29E-02
82	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	2.29E-02
83	GO:0051287: NAD binding	2.43E-02
84	GO:0003714: transcription corepressor activity	2.46E-02
85	GO:0004176: ATP-dependent peptidase activity	2.82E-02
86	GO:0016491: oxidoreductase activity	2.91E-02
87	GO:0003756: protein disulfide isomerase activity	3.40E-02
88	GO:0004650: polygalacturonase activity	3.51E-02
89	GO:0003729: mRNA binding	3.65E-02
90	GO:0030551: cyclic nucleotide binding	3.81E-02
91	GO:0005249: voltage-gated potassium channel activity	3.81E-02
92	GO:0005509: calcium ion binding	4.01E-02
93	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	4.01E-02
94	GO:0008080: N-acetyltransferase activity	4.01E-02
95	GO:0005355: glucose transmembrane transporter activity	4.23E-02
96	GO:0050662: coenzyme binding	4.23E-02
97	GO:0019901: protein kinase binding	4.44E-02
98	GO:0016762: xyloglucan:xyloglucosyl transferase activity	4.66E-02
99	GO:0004518: nuclease activity	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0044391: ribosomal subunit	0.00E+00
3	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
4	GO:0009507: chloroplast	2.37E-31
5	GO:0009534: chloroplast thylakoid	9.30E-25
6	GO:0009535: chloroplast thylakoid membrane	1.64E-21
7	GO:0009579: thylakoid	5.73E-21
8	GO:0009570: chloroplast stroma	2.03E-20
9	GO:0009543: chloroplast thylakoid lumen	2.39E-19
10	GO:0009941: chloroplast envelope	7.33E-19
11	GO:0031977: thylakoid lumen	4.59E-13
12	GO:0010007: magnesium chelatase complex	9.33E-08
13	GO:0009654: photosystem II oxygen evolving complex	5.66E-07
14	GO:0019898: extrinsic component of membrane	4.34E-06
15	GO:0030095: chloroplast photosystem II	7.00E-06
16	GO:0005840: ribosome	1.47E-05
17	GO:0016020: membrane	8.77E-05
18	GO:0005618: cell wall	1.11E-04
19	GO:0048046: apoplast	2.27E-04
20	GO:0045239: tricarboxylic acid cycle enzyme complex	4.53E-04
21	GO:0043674: columella	4.53E-04
22	GO:0031969: chloroplast membrane	6.51E-04
23	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	8.12E-04
24	GO:0008180: COP9 signalosome	8.12E-04
25	GO:0030093: chloroplast photosystem I	9.79E-04
26	GO:0009295: nucleoid	1.16E-03
27	GO:0032040: small-subunit processome	1.47E-03
28	GO:0009508: plastid chromosome	1.67E-03
29	GO:0005886: plasma membrane	1.68E-03
30	GO:0010287: plastoglobule	2.10E-03
31	GO:0005576: extracellular region	2.24E-03
32	GO:0032432: actin filament bundle	2.31E-03
33	GO:0015630: microtubule cytoskeleton	2.31E-03
34	GO:0009531: secondary cell wall	2.31E-03
35	GO:0009505: plant-type cell wall	3.67E-03
36	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	4.92E-03
37	GO:0042807: central vacuole	7.03E-03
38	GO:0009986: cell surface	7.03E-03
39	GO:0009533: chloroplast stromal thylakoid	7.03E-03
40	GO:0009706: chloroplast inner membrane	8.11E-03
41	GO:0042644: chloroplast nucleoid	1.07E-02
42	GO:0019005: SCF ubiquitin ligase complex	1.22E-02
43	GO:0005884: actin filament	1.48E-02
44	GO:0005578: proteinaceous extracellular matrix	1.79E-02
45	GO:0000312: plastid small ribosomal subunit	1.95E-02
46	GO:0000502: proteasome complex	2.70E-02
47	GO:0031225: anchored component of membrane	2.98E-02
48	GO:0015629: actin cytoskeleton	3.20E-02
49	GO:0009522: photosystem I	4.23E-02
50	GO:0009523: photosystem II	4.44E-02