co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G54740

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901485: positive regulation of transcription factor catabolic process	0.00E+00
2	GO:0090393: sepal giant cell development	0.00E+00
3	GO:0071555: cell wall organization	2.62E-05
4	GO:0042546: cell wall biogenesis	4.08E-05
5	GO:0009741: response to brassinosteroid	7.22E-05
6	GO:0045489: pectin biosynthetic process	7.22E-05
7	GO:0006723: cuticle hydrocarbon biosynthetic process	1.50E-04
8	GO:0033481: galacturonate biosynthetic process	1.50E-04
9	GO:0010411: xyloglucan metabolic process	2.14E-04
10	GO:0000038: very long-chain fatty acid metabolic process	2.70E-04
11	GO:0007154: cell communication	3.42E-04
12	GO:0071497: cellular response to freezing	3.42E-04
13	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	3.42E-04
14	GO:0043447: alkane biosynthetic process	5.61E-04
15	GO:0032877: positive regulation of DNA endoreduplication	8.03E-04
16	GO:1902476: chloride transmembrane transport	8.03E-04
17	GO:0015749: monosaccharide transport	8.03E-04
18	GO:0019722: calcium-mediated signaling	8.59E-04
19	GO:0042335: cuticle development	9.99E-04
20	GO:0000271: polysaccharide biosynthetic process	9.99E-04
21	GO:2000762: regulation of phenylpropanoid metabolic process	1.35E-03
22	GO:0010583: response to cyclopentenone	1.40E-03
23	GO:0060918: auxin transport	1.65E-03
24	GO:1900425: negative regulation of defense response to bacterium	1.65E-03
25	GO:0007267: cell-cell signaling	1.68E-03
26	GO:0009753: response to jasmonic acid	1.74E-03
27	GO:0045926: negative regulation of growth	1.98E-03
28	GO:0009612: response to mechanical stimulus	1.98E-03
29	GO:0050829: defense response to Gram-negative bacterium	2.33E-03
30	GO:0006821: chloride transport	2.33E-03
31	GO:0051510: regulation of unidimensional cell growth	2.33E-03
32	GO:0006402: mRNA catabolic process	2.70E-03
33	GO:0009850: auxin metabolic process	2.70E-03
34	GO:0008610: lipid biosynthetic process	2.70E-03
35	GO:0010099: regulation of photomorphogenesis	3.08E-03
36	GO:0016051: carbohydrate biosynthetic process	3.09E-03
37	GO:0009733: response to auxin	3.48E-03
38	GO:0051865: protein autoubiquitination	3.49E-03
39	GO:0000902: cell morphogenesis	3.49E-03
40	GO:0042761: very long-chain fatty acid biosynthetic process	3.91E-03
41	GO:0009638: phototropism	3.91E-03
42	GO:0043069: negative regulation of programmed cell death	4.35E-03
43	GO:0080167: response to karrikin	4.79E-03
44	GO:1903507: negative regulation of nucleic acid-templated transcription	4.80E-03
45	GO:0031347: regulation of defense response	4.81E-03
46	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	5.00E-03
47	GO:0016024: CDP-diacylglycerol biosynthetic process	5.27E-03
48	GO:0015706: nitrate transport	5.27E-03
49	GO:0009585: red, far-red light phototransduction	5.35E-03
50	GO:0006468: protein phosphorylation	5.68E-03
51	GO:2000028: regulation of photoperiodism, flowering	5.75E-03
52	GO:0018107: peptidyl-threonine phosphorylation	5.75E-03
53	GO:0034605: cellular response to heat	6.25E-03
54	GO:0010143: cutin biosynthetic process	6.25E-03
55	GO:0009626: plant-type hypersensitive response	6.74E-03
56	GO:0010167: response to nitrate	6.77E-03
57	GO:0009225: nucleotide-sugar metabolic process	6.77E-03
58	GO:0010025: wax biosynthetic process	7.30E-03
59	GO:0006833: water transport	7.30E-03
60	GO:0009751: response to salicylic acid	7.72E-03
61	GO:0005992: trehalose biosynthetic process	7.84E-03
62	GO:0009742: brassinosteroid mediated signaling pathway	8.07E-03
63	GO:0035428: hexose transmembrane transport	9.56E-03
64	GO:2000022: regulation of jasmonic acid mediated signaling pathway	9.56E-03
65	GO:0010017: red or far-red light signaling pathway	9.56E-03
66	GO:0006357: regulation of transcription from RNA polymerase II promoter	1.12E-02
67	GO:0034220: ion transmembrane transport	1.20E-02
68	GO:0010087: phloem or xylem histogenesis	1.20E-02
69	GO:0006633: fatty acid biosynthetic process	1.20E-02
70	GO:0000226: microtubule cytoskeleton organization	1.20E-02
71	GO:0030154: cell differentiation	1.24E-02
72	GO:0040008: regulation of growth	1.26E-02
73	GO:0009958: positive gravitropism	1.27E-02
74	GO:0046323: glucose import	1.27E-02
75	GO:0009791: post-embryonic development	1.41E-02
76	GO:0071554: cell wall organization or biogenesis	1.47E-02
77	GO:0002229: defense response to oomycetes	1.47E-02
78	GO:0048235: pollen sperm cell differentiation	1.55E-02
79	GO:0007264: small GTPase mediated signal transduction	1.55E-02
80	GO:0009828: plant-type cell wall loosening	1.69E-02
81	GO:0019760: glucosinolate metabolic process	1.69E-02
82	GO:0001666: response to hypoxia	1.92E-02
83	GO:0016126: sterol biosynthetic process	1.92E-02
84	GO:0009826: unidimensional cell growth	1.97E-02
85	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.99E-02
86	GO:0048573: photoperiodism, flowering	2.15E-02
87	GO:0009860: pollen tube growth	2.20E-02
88	GO:0016311: dephosphorylation	2.23E-02
89	GO:0007049: cell cycle	2.29E-02
90	GO:0009723: response to ethylene	2.37E-02
91	GO:0010218: response to far red light	2.48E-02
92	GO:0010119: regulation of stomatal movement	2.56E-02
93	GO:0007568: aging	2.56E-02
94	GO:0010200: response to chitin	2.63E-02
95	GO:0010114: response to red light	3.28E-02
96	GO:0006629: lipid metabolic process	3.74E-02
97	GO:0009664: plant-type cell wall organization	3.85E-02
98	GO:0009809: lignin biosynthetic process	4.05E-02
99	GO:0051603: proteolysis involved in cellular protein catabolic process	4.15E-02
100	GO:0009873: ethylene-activated signaling pathway	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0016762: xyloglucan:xyloglucosyl transferase activity	9.94E-05
2	GO:0009671: nitrate:proton symporter activity	1.50E-04
3	GO:0052638: indole-3-butyrate beta-glucosyltransferase activity	1.50E-04
4	GO:0003838: sterol 24-C-methyltransferase activity	1.50E-04
5	GO:0080132: fatty acid alpha-hydroxylase activity	1.50E-04
6	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.14E-04
7	GO:0048531: beta-1,3-galactosyltransferase activity	3.42E-04
8	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	7.29E-04
9	GO:0050378: UDP-glucuronate 4-epimerase activity	1.06E-03
10	GO:0005253: anion channel activity	1.06E-03
11	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.34E-03
12	GO:0016758: transferase activity, transferring hexosyl groups	1.35E-03
13	GO:0002020: protease binding	1.35E-03
14	GO:0015145: monosaccharide transmembrane transporter activity	1.35E-03
15	GO:0016759: cellulose synthase activity	1.58E-03
16	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.65E-03
17	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.65E-03
18	GO:0005247: voltage-gated chloride channel activity	1.65E-03
19	GO:0016621: cinnamoyl-CoA reductase activity	2.33E-03
20	GO:0016757: transferase activity, transferring glycosyl groups	2.57E-03
21	GO:0044212: transcription regulatory region DNA binding	2.84E-03
22	GO:0015112: nitrate transmembrane transporter activity	3.91E-03
23	GO:0004805: trehalose-phosphatase activity	4.35E-03
24	GO:0004864: protein phosphatase inhibitor activity	4.35E-03
25	GO:0004860: protein kinase inhibitor activity	4.80E-03
26	GO:0004674: protein serine/threonine kinase activity	5.74E-03
27	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	6.03E-03
28	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	6.25E-03
29	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	6.90E-03
30	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	7.30E-03
31	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	7.30E-03
32	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	7.30E-03
33	GO:0003714: transcription corepressor activity	7.84E-03
34	GO:0008134: transcription factor binding	7.84E-03
35	GO:0005355: glucose transmembrane transporter activity	1.34E-02
36	GO:0004872: receptor activity	1.41E-02
37	GO:0016791: phosphatase activity	1.69E-02
38	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.76E-02
39	GO:0004842: ubiquitin-protein transferase activity	1.77E-02
40	GO:0016413: O-acetyltransferase activity	1.84E-02
41	GO:0015250: water channel activity	1.92E-02
42	GO:0004672: protein kinase activity	1.94E-02
43	GO:0046982: protein heterodimerization activity	2.01E-02
44	GO:0030247: polysaccharide binding	2.15E-02
45	GO:0004871: signal transducer activity	3.18E-02
46	GO:0004185: serine-type carboxypeptidase activity	3.28E-02
47	GO:0016298: lipase activity	4.15E-02
48	GO:0003824: catalytic activity	4.41E-02
49	GO:0043565: sequence-specific DNA binding	4.63E-02
50	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.88E-02
51	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0031225: anchored component of membrane	8.00E-05
2	GO:0009506: plasmodesma	1.60E-04
3	GO:0005794: Golgi apparatus	1.73E-04
4	GO:0009505: plant-type cell wall	2.79E-04
5	GO:0046658: anchored component of plasma membrane	4.97E-04
6	GO:0005886: plasma membrane	8.13E-04
7	GO:0016021: integral component of membrane	9.27E-04
8	GO:0034707: chloride channel complex	1.65E-03
9	GO:0000786: nucleosome	2.96E-03
10	GO:0005618: cell wall	3.59E-03
11	GO:0048471: perinuclear region of cytoplasm	4.80E-03
12	GO:0000139: Golgi membrane	4.83E-03
13	GO:0048046: apoplast	9.08E-03
14	GO:0032580: Golgi cisterna membrane	1.69E-02
15	GO:0005773: vacuole	1.88E-02
16	GO:0030529: intracellular ribonucleoprotein complex	1.92E-02
17	GO:0005576: extracellular region	2.02E-02