Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G54500

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006429: leucyl-tRNA aminoacylation0.00E+00
2GO:0002184: cytoplasmic translational termination0.00E+00
3GO:0061635: regulation of protein complex stability0.00E+00
4GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
5GO:0007638: mechanosensory behavior0.00E+00
6GO:1905499: trichome papilla formation0.00E+00
7GO:0009773: photosynthetic electron transport in photosystem I1.25E-10
8GO:0015979: photosynthesis3.10E-09
9GO:0032544: plastid translation1.84E-07
10GO:0009735: response to cytokinin1.40E-06
11GO:0042254: ribosome biogenesis1.83E-06
12GO:0009658: chloroplast organization1.82E-05
13GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.75E-05
14GO:0009767: photosynthetic electron transport chain6.51E-05
15GO:0015976: carbon utilization6.70E-05
16GO:2000122: negative regulation of stomatal complex development6.70E-05
17GO:0006546: glycine catabolic process6.70E-05
18GO:0010037: response to carbon dioxide6.70E-05
19GO:0009817: defense response to fungus, incompatible interaction1.17E-04
20GO:0006412: translation1.21E-04
21GO:0006810: transport1.50E-04
22GO:0010196: nonphotochemical quenching2.70E-04
23GO:0016117: carotenoid biosynthetic process2.78E-04
24GO:0042335: cuticle development3.09E-04
25GO:0071588: hydrogen peroxide mediated signaling pathway3.24E-04
26GO:0010729: positive regulation of hydrogen peroxide biosynthetic process3.24E-04
27GO:1904966: positive regulation of vitamin E biosynthetic process3.24E-04
28GO:0071277: cellular response to calcium ion3.24E-04
29GO:1904964: positive regulation of phytol biosynthetic process3.24E-04
30GO:0045454: cell redox homeostasis3.35E-04
31GO:0055114: oxidation-reduction process5.36E-04
32GO:0042742: defense response to bacterium6.37E-04
33GO:0030388: fructose 1,6-bisphosphate metabolic process7.07E-04
34GO:1902326: positive regulation of chlorophyll biosynthetic process7.07E-04
35GO:0006729: tetrahydrobiopterin biosynthetic process7.07E-04
36GO:0006415: translational termination7.96E-04
37GO:0018298: protein-chromophore linkage1.01E-03
38GO:0090506: axillary shoot meristem initiation1.15E-03
39GO:0006000: fructose metabolic process1.15E-03
40GO:0006954: inflammatory response1.15E-03
41GO:0090391: granum assembly1.15E-03
42GO:0071492: cellular response to UV-A1.15E-03
43GO:0006696: ergosterol biosynthetic process1.15E-03
44GO:0010207: photosystem II assembly1.16E-03
45GO:0010020: chloroplast fission1.16E-03
46GO:0019253: reductive pentose-phosphate cycle1.16E-03
47GO:0007231: osmosensory signaling pathway1.65E-03
48GO:0043572: plastid fission1.65E-03
49GO:0006869: lipid transport1.73E-03
50GO:0006418: tRNA aminoacylation for protein translation1.76E-03
51GO:0009768: photosynthesis, light harvesting in photosystem I1.76E-03
52GO:0061077: chaperone-mediated protein folding1.93E-03
53GO:0071486: cellular response to high light intensity2.21E-03
54GO:0019464: glycine decarboxylation via glycine cleavage system2.21E-03
55GO:0009765: photosynthesis, light harvesting2.21E-03
56GO:0045727: positive regulation of translation2.21E-03
57GO:0033500: carbohydrate homeostasis2.21E-03
58GO:0016123: xanthophyll biosynthetic process2.82E-03
59GO:0006665: sphingolipid metabolic process2.82E-03
60GO:0016120: carotene biosynthetic process2.82E-03
61GO:0032543: mitochondrial translation2.82E-03
62GO:0006564: L-serine biosynthetic process2.82E-03
63GO:0010236: plastoquinone biosynthetic process2.82E-03
64GO:0031365: N-terminal protein amino acid modification2.82E-03
65GO:0000413: protein peptidyl-prolyl isomerization2.93E-03
66GO:0042549: photosystem II stabilization3.49E-03
67GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.49E-03
68GO:0016554: cytidine to uridine editing3.49E-03
69GO:0010190: cytochrome b6f complex assembly3.49E-03
70GO:0018258: protein O-linked glycosylation via hydroxyproline3.49E-03
71GO:0009643: photosynthetic acclimation3.49E-03
72GO:0010405: arabinogalactan protein metabolic process3.49E-03
73GO:0009409: response to cold4.00E-03
74GO:0009955: adaxial/abaxial pattern specification4.20E-03
75GO:0010067: procambium histogenesis4.20E-03
76GO:0042372: phylloquinone biosynthetic process4.20E-03
77GO:1901259: chloroplast rRNA processing4.20E-03
78GO:0010189: vitamin E biosynthetic process4.20E-03
79GO:0010019: chloroplast-nucleus signaling pathway4.20E-03
80GO:0010555: response to mannitol4.20E-03
81GO:0009645: response to low light intensity stimulus4.95E-03
82GO:0006400: tRNA modification4.95E-03
83GO:0010027: thylakoid membrane organization5.63E-03
84GO:0009642: response to light intensity5.76E-03
85GO:0006875: cellular metal ion homeostasis5.76E-03
86GO:0009704: de-etiolation5.76E-03
87GO:0071555: cell wall organization6.51E-03
88GO:0006002: fructose 6-phosphate metabolic process6.60E-03
89GO:0009657: plastid organization6.60E-03
90GO:0017004: cytochrome complex assembly6.60E-03
91GO:0015995: chlorophyll biosynthetic process6.63E-03
92GO:0010411: xyloglucan metabolic process6.63E-03
93GO:0090305: nucleic acid phosphodiester bond hydrolysis7.48E-03
94GO:0010206: photosystem II repair7.48E-03
95GO:0090333: regulation of stomatal closure7.48E-03
96GO:0006633: fatty acid biosynthetic process7.61E-03
97GO:0042761: very long-chain fatty acid biosynthetic process8.41E-03
98GO:1900865: chloroplast RNA modification8.41E-03
99GO:0010119: regulation of stomatal movement8.51E-03
100GO:0043069: negative regulation of programmed cell death9.37E-03
101GO:0034599: cellular response to oxidative stress9.76E-03
102GO:0006816: calcium ion transport1.04E-02
103GO:0043085: positive regulation of catalytic activity1.04E-02
104GO:0018119: peptidyl-cysteine S-nitrosylation1.04E-02
105GO:0006820: anion transport1.14E-02
106GO:0045037: protein import into chloroplast stroma1.14E-02
107GO:0006094: gluconeogenesis1.25E-02
108GO:0005986: sucrose biosynthetic process1.25E-02
109GO:0006006: glucose metabolic process1.25E-02
110GO:0042546: cell wall biogenesis1.26E-02
111GO:0009644: response to high light intensity1.31E-02
112GO:0010223: secondary shoot formation1.36E-02
113GO:0005985: sucrose metabolic process1.48E-02
114GO:0070588: calcium ion transmembrane transport1.48E-02
115GO:0019762: glucosinolate catabolic process1.60E-02
116GO:0010025: wax biosynthetic process1.60E-02
117GO:0006636: unsaturated fatty acid biosynthetic process1.60E-02
118GO:0019344: cysteine biosynthetic process1.72E-02
119GO:0000027: ribosomal large subunit assembly1.72E-02
120GO:0016998: cell wall macromolecule catabolic process1.97E-02
121GO:0009416: response to light stimulus2.01E-02
122GO:0030245: cellulose catabolic process2.10E-02
123GO:0016226: iron-sulfur cluster assembly2.10E-02
124GO:0080092: regulation of pollen tube growth2.10E-02
125GO:0009294: DNA mediated transformation2.23E-02
126GO:0001944: vasculature development2.23E-02
127GO:0010091: trichome branching2.37E-02
128GO:0019722: calcium-mediated signaling2.37E-02
129GO:0010089: xylem development2.37E-02
130GO:0010087: phloem or xylem histogenesis2.65E-02
131GO:0006662: glycerol ether metabolic process2.80E-02
132GO:0002229: defense response to oomycetes3.25E-02
133GO:0000302: response to reactive oxygen species3.25E-02
134GO:0042744: hydrogen peroxide catabolic process3.31E-02
135GO:0007264: small GTPase mediated signal transduction3.41E-02
136GO:1901657: glycosyl compound metabolic process3.57E-02
137GO:0019760: glucosinolate metabolic process3.73E-02
138GO:0006413: translational initiation3.74E-02
139GO:0007267: cell-cell signaling3.89E-02
140GO:0005975: carbohydrate metabolic process3.96E-02
141GO:0045490: pectin catabolic process4.01E-02
142GO:0042128: nitrate assimilation4.57E-02
RankGO TermAdjusted P value
1GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
2GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
3GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
4GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
5GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
6GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
7GO:0045435: lycopene epsilon cyclase activity0.00E+00
8GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
9GO:0004822: isoleucine-tRNA ligase activity0.00E+00
10GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity0.00E+00
11GO:0046905: phytoene synthase activity0.00E+00
12GO:0004823: leucine-tRNA ligase activity0.00E+00
13GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
14GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
15GO:0019843: rRNA binding7.30E-12
16GO:0051920: peroxiredoxin activity3.07E-08
17GO:0016209: antioxidant activity1.09E-07
18GO:0002161: aminoacyl-tRNA editing activity1.69E-05
19GO:0003735: structural constituent of ribosome2.66E-05
20GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.74E-05
21GO:0016149: translation release factor activity, codon specific3.75E-05
22GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor6.70E-05
23GO:0016168: chlorophyll binding7.92E-05
24GO:0005528: FK506 binding1.30E-04
25GO:0004723: calcium-dependent protein serine/threonine phosphatase activity2.07E-04
26GO:0051537: 2 iron, 2 sulfur cluster binding3.10E-04
27GO:0047259: glucomannan 4-beta-mannosyltransferase activity3.24E-04
28GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.24E-04
29GO:0080132: fatty acid alpha-hydroxylase activity3.24E-04
30GO:0009496: plastoquinol--plastocyanin reductase activity3.24E-04
31GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity3.24E-04
32GO:0070006: metalloaminopeptidase activity3.24E-04
33GO:0051996: squalene synthase activity3.24E-04
34GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity3.24E-04
35GO:0015088: copper uptake transmembrane transporter activity3.24E-04
36GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.24E-04
37GO:0003747: translation release factor activity5.01E-04
38GO:0004617: phosphoglycerate dehydrogenase activity7.07E-04
39GO:0004047: aminomethyltransferase activity7.07E-04
40GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity7.07E-04
41GO:0016630: protochlorophyllide reductase activity7.07E-04
42GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity7.07E-04
43GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity7.07E-04
44GO:0008967: phosphoglycolate phosphatase activity7.07E-04
45GO:0004310: farnesyl-diphosphate farnesyltransferase activity7.07E-04
46GO:0042389: omega-3 fatty acid desaturase activity7.07E-04
47GO:0004601: peroxidase activity7.38E-04
48GO:0004177: aminopeptidase activity7.96E-04
49GO:0004565: beta-galactosidase activity1.03E-03
50GO:0004089: carbonate dehydratase activity1.03E-03
51GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.15E-03
52GO:0004148: dihydrolipoyl dehydrogenase activity1.15E-03
53GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.15E-03
54GO:0031409: pigment binding1.44E-03
55GO:0004375: glycine dehydrogenase (decarboxylating) activity1.65E-03
56GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.65E-03
57GO:0043023: ribosomal large subunit binding1.65E-03
58GO:0043495: protein anchor2.21E-03
59GO:0004659: prenyltransferase activity2.21E-03
60GO:0022891: substrate-specific transmembrane transporter activity2.30E-03
61GO:0046872: metal ion binding2.32E-03
62GO:0004812: aminoacyl-tRNA ligase activity2.71E-03
63GO:0008381: mechanically-gated ion channel activity2.82E-03
64GO:0009922: fatty acid elongase activity2.82E-03
65GO:0003959: NADPH dehydrogenase activity2.82E-03
66GO:0016773: phosphotransferase activity, alcohol group as acceptor2.82E-03
67GO:0004040: amidase activity2.82E-03
68GO:1990714: hydroxyproline O-galactosyltransferase activity3.49E-03
69GO:0004130: cytochrome-c peroxidase activity3.49E-03
70GO:0016208: AMP binding3.49E-03
71GO:0016688: L-ascorbate peroxidase activity3.49E-03
72GO:0008289: lipid binding3.81E-03
73GO:0048038: quinone binding3.89E-03
74GO:0016762: xyloglucan:xyloglucosyl transferase activity3.89E-03
75GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.20E-03
76GO:0051753: mannan synthase activity4.20E-03
77GO:0008235: metalloexopeptidase activity4.95E-03
78GO:0019899: enzyme binding4.95E-03
79GO:0008237: metallopeptidase activity5.01E-03
80GO:0052747: sinapyl alcohol dehydrogenase activity5.76E-03
81GO:0004033: aldo-keto reductase (NADP) activity5.76E-03
82GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water6.60E-03
83GO:0016798: hydrolase activity, acting on glycosyl bonds6.63E-03
84GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors7.48E-03
85GO:0004222: metalloendopeptidase activity8.11E-03
86GO:0005381: iron ion transmembrane transporter activity8.41E-03
87GO:0008047: enzyme activator activity9.37E-03
88GO:0030234: enzyme regulator activity9.37E-03
89GO:0009055: electron carrier activity9.43E-03
90GO:0047372: acylglycerol lipase activity1.04E-02
91GO:0005089: Rho guanyl-nucleotide exchange factor activity1.04E-02
92GO:0016491: oxidoreductase activity1.11E-02
93GO:0000049: tRNA binding1.14E-02
94GO:0045551: cinnamyl-alcohol dehydrogenase activity1.14E-02
95GO:0005262: calcium channel activity1.25E-02
96GO:0031072: heat shock protein binding1.25E-02
97GO:0008266: poly(U) RNA binding1.36E-02
98GO:0051287: NAD binding1.46E-02
99GO:0004857: enzyme inhibitor activity1.72E-02
100GO:0051536: iron-sulfur cluster binding1.72E-02
101GO:0008324: cation transmembrane transporter activity1.84E-02
102GO:0004176: ATP-dependent peptidase activity1.97E-02
103GO:0033612: receptor serine/threonine kinase binding1.97E-02
104GO:0030599: pectinesterase activity2.19E-02
105GO:0030570: pectate lyase activity2.23E-02
106GO:0008810: cellulase activity2.23E-02
107GO:0003824: catalytic activity2.31E-02
108GO:0005102: receptor binding2.51E-02
109GO:0047134: protein-disulfide reductase activity2.51E-02
110GO:0004791: thioredoxin-disulfide reductase activity2.95E-02
111GO:0050662: coenzyme binding2.95E-02
112GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.03E-02
113GO:0030246: carbohydrate binding3.12E-02
114GO:0004518: nuclease activity3.41E-02
115GO:0000156: phosphorelay response regulator activity3.57E-02
116GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.57E-02
117GO:0016759: cellulose synthase activity3.73E-02
118GO:0008483: transaminase activity3.89E-02
119GO:0016722: oxidoreductase activity, oxidizing metal ions3.89E-02
120GO:0016597: amino acid binding4.06E-02
121GO:0009931: calcium-dependent protein serine/threonine kinase activity4.57E-02
122GO:0003743: translation initiation factor activity4.67E-02
123GO:0102483: scopolin beta-glucosidase activity4.75E-02
124GO:0004683: calmodulin-dependent protein kinase activity4.75E-02
125GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.92E-02
126GO:0008236: serine-type peptidase activity4.92E-02
127GO:0005509: calcium ion binding5.00E-02
RankGO TermAdjusted P value
1GO:0009571: proplastid stroma0.00E+00
2GO:0009575: chromoplast stroma0.00E+00
3GO:0009507: chloroplast2.99E-63
4GO:0009535: chloroplast thylakoid membrane5.64E-35
5GO:0009941: chloroplast envelope3.38E-30
6GO:0009570: chloroplast stroma1.97E-26
7GO:0009534: chloroplast thylakoid7.23E-21
8GO:0009579: thylakoid4.74E-17
9GO:0048046: apoplast1.69E-15
10GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.93E-11
11GO:0009543: chloroplast thylakoid lumen4.30E-09
12GO:0005840: ribosome8.24E-06
13GO:0031977: thylakoid lumen2.14E-05
14GO:0031969: chloroplast membrane3.48E-05
15GO:0010319: stromule5.72E-05
16GO:0009706: chloroplast inner membrane1.12E-04
17GO:0009654: photosystem II oxygen evolving complex1.50E-04
18GO:0042651: thylakoid membrane1.50E-04
19GO:0010287: plastoglobule1.60E-04
20GO:0009536: plastid3.18E-04
21GO:0009782: photosystem I antenna complex3.24E-04
22GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex3.24E-04
23GO:0009515: granal stacked thylakoid3.24E-04
24GO:0009923: fatty acid elongase complex3.24E-04
25GO:0009344: nitrite reductase complex [NAD(P)H]3.24E-04
26GO:0009505: plant-type cell wall3.38E-04
27GO:0009523: photosystem II4.13E-04
28GO:0046658: anchored component of plasma membrane5.59E-04
29GO:0042170: plastid membrane7.07E-04
30GO:0000311: plastid large ribosomal subunit9.08E-04
31GO:0030095: chloroplast photosystem II1.16E-03
32GO:0030076: light-harvesting complex1.29E-03
33GO:0005960: glycine cleavage complex1.65E-03
34GO:0031897: Tic complex2.21E-03
35GO:0005618: cell wall2.66E-03
36GO:0009512: cytochrome b6f complex2.82E-03
37GO:0016020: membrane3.33E-03
38GO:0019898: extrinsic component of membrane3.64E-03
39GO:0031225: anchored component of membrane3.90E-03
40GO:0009533: chloroplast stromal thylakoid4.95E-03
41GO:0005778: peroxisomal membrane5.01E-03
42GO:0009539: photosystem II reaction center6.60E-03
43GO:0005763: mitochondrial small ribosomal subunit7.48E-03
44GO:0015934: large ribosomal subunit8.51E-03
45GO:0016324: apical plasma membrane9.37E-03
46GO:0005875: microtubule associated complex1.60E-02
47GO:0022626: cytosolic ribosome1.88E-02
48GO:0015935: small ribosomal subunit1.97E-02
49GO:0009532: plastid stroma1.97E-02
50GO:0009522: photosystem I2.95E-02
51GO:0016021: integral component of membrane3.11E-02
Gene type



Gene DE type