co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G54410

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046473: phosphatidic acid metabolic process	0.00E+00
2	GO:0009409: response to cold	5.43E-06
3	GO:0010353: response to trehalose	1.27E-04
4	GO:0009660: amyloplast organization	1.27E-04
5	GO:0042344: indole glucosinolate catabolic process	2.17E-04
6	GO:0033523: histone H2B ubiquitination	2.17E-04
7	GO:0030029: actin filament-based process	2.17E-04
8	GO:0009650: UV protection	3.17E-04
9	GO:0015749: monosaccharide transport	3.17E-04
10	GO:0007623: circadian rhythm	3.52E-04
11	GO:0006646: phosphatidylethanolamine biosynthetic process	4.24E-04
12	GO:0015743: malate transport	4.24E-04
13	GO:0033320: UDP-D-xylose biosynthetic process	4.24E-04
14	GO:1901409: positive regulation of phosphorylation of RNA polymerase II C-terminal domain	4.24E-04
15	GO:0005513: detection of calcium ion	5.39E-04
16	GO:0097428: protein maturation by iron-sulfur cluster transfer	5.39E-04
17	GO:0043097: pyrimidine nucleoside salvage	5.39E-04
18	GO:0045040: protein import into mitochondrial outer membrane	6.60E-04
19	GO:0009959: negative gravitropism	6.60E-04
20	GO:0042732: D-xylose metabolic process	6.60E-04
21	GO:0006206: pyrimidine nucleobase metabolic process	6.60E-04
22	GO:0009631: cold acclimation	7.17E-04
23	GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity	7.87E-04
24	GO:0045926: negative regulation of growth	7.87E-04
25	GO:0009612: response to mechanical stimulus	7.87E-04
26	GO:0009737: response to abscisic acid	8.54E-04
27	GO:0009610: response to symbiotic fungus	9.18E-04
28	GO:0045995: regulation of embryonic development	9.18E-04
29	GO:0098869: cellular oxidant detoxification	9.18E-04
30	GO:0046470: phosphatidylcholine metabolic process	9.18E-04
31	GO:0009415: response to water	1.06E-03
32	GO:0009819: drought recovery	1.06E-03
33	GO:0006972: hyperosmotic response	1.20E-03
34	GO:0006979: response to oxidative stress	1.25E-03
35	GO:0090333: regulation of stomatal closure	1.35E-03
36	GO:0046916: cellular transition metal ion homeostasis	1.35E-03
37	GO:0009051: pentose-phosphate shunt, oxidative branch	1.35E-03
38	GO:0019432: triglyceride biosynthetic process	1.35E-03
39	GO:0009682: induced systemic resistance	1.84E-03
40	GO:0052544: defense response by callose deposition in cell wall	1.84E-03
41	GO:0012501: programmed cell death	2.01E-03
42	GO:0005983: starch catabolic process	2.01E-03
43	GO:0006626: protein targeting to mitochondrion	2.19E-03
44	GO:0006006: glucose metabolic process	2.19E-03
45	GO:0007034: vacuolar transport	2.38E-03
46	GO:0010030: positive regulation of seed germination	2.56E-03
47	GO:0007033: vacuole organization	2.56E-03
48	GO:0009225: nucleotide-sugar metabolic process	2.56E-03
49	GO:0006071: glycerol metabolic process	2.76E-03
50	GO:0009269: response to desiccation	3.37E-03
51	GO:0048278: vesicle docking	3.37E-03
52	GO:0010468: regulation of gene expression	3.79E-03
53	GO:0006511: ubiquitin-dependent protein catabolic process	3.91E-03
54	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	4.26E-03
55	GO:0010118: stomatal movement	4.49E-03
56	GO:0015991: ATP hydrolysis coupled proton transport	4.49E-03
57	GO:0000226: microtubule cytoskeleton organization	4.49E-03
58	GO:0046323: glucose import	4.72E-03
59	GO:0016310: phosphorylation	4.80E-03
60	GO:0061025: membrane fusion	4.96E-03
61	GO:0009749: response to glucose	5.21E-03
62	GO:0008654: phospholipid biosynthetic process	5.21E-03
63	GO:0009567: double fertilization forming a zygote and endosperm	6.23E-03
64	GO:0019760: glucosinolate metabolic process	6.23E-03
65	GO:0009414: response to water deprivation	6.29E-03
66	GO:0010286: heat acclimation	6.49E-03
67	GO:0009911: positive regulation of flower development	7.04E-03
68	GO:0010029: regulation of seed germination	7.31E-03
69	GO:0006906: vesicle fusion	7.59E-03
70	GO:0009651: response to salt stress	7.71E-03
71	GO:0006950: response to stress	7.88E-03
72	GO:0018298: protein-chromophore linkage	8.46E-03
73	GO:0009817: defense response to fungus, incompatible interaction	8.46E-03
74	GO:0006811: ion transport	9.06E-03
75	GO:0007568: aging	9.36E-03
76	GO:0009637: response to blue light	9.99E-03
77	GO:0030001: metal ion transport	1.09E-02
78	GO:0042542: response to hydrogen peroxide	1.16E-02
79	GO:0000209: protein polyubiquitination	1.23E-02
80	GO:0009644: response to high light intensity	1.26E-02
81	GO:0000165: MAPK cascade	1.37E-02
82	GO:0007165: signal transduction	1.65E-02
83	GO:0016569: covalent chromatin modification	1.81E-02
84	GO:0051726: regulation of cell cycle	1.97E-02
85	GO:0009058: biosynthetic process	2.31E-02
86	GO:0010228: vegetative to reproductive phase transition of meristem	2.88E-02
87	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.03E-02
88	GO:0006470: protein dephosphorylation	3.07E-02
89	GO:0009617: response to bacterium	3.17E-02
90	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	3.61E-02
91	GO:0007049: cell cycle	4.12E-02
92	GO:0016192: vesicle-mediated transport	4.60E-02
93	GO:0005975: carbohydrate metabolic process	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0005358: high-affinity hydrogen:glucose symporter activity	0.00E+00
2	GO:0004491: methylmalonate-semialdehyde dehydrogenase (acylating) activity	0.00E+00
3	GO:0004869: cysteine-type endopeptidase inhibitor activity	2.02E-05
4	GO:0005509: calcium ion binding	2.05E-05
5	GO:0016274: protein-arginine N-methyltransferase activity	5.18E-05
6	GO:0009679: hexose:proton symporter activity	5.18E-05
7	GO:0050521: alpha-glucan, water dikinase activity	5.18E-05
8	GO:0046870: cadmium ion binding	5.18E-05
9	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	5.18E-05
10	GO:0001047: core promoter binding	1.27E-04
11	GO:0032791: lead ion binding	1.27E-04
12	GO:0004609: phosphatidylserine decarboxylase activity	1.27E-04
13	GO:0004839: ubiquitin activating enzyme activity	1.27E-04
14	GO:0005253: anion channel activity	4.24E-04
15	GO:0004345: glucose-6-phosphate dehydrogenase activity	4.24E-04
16	GO:0015145: monosaccharide transmembrane transporter activity	5.39E-04
17	GO:0008641: small protein activating enzyme activity	5.39E-04
18	GO:0019137: thioglucosidase activity	6.60E-04
19	GO:0048040: UDP-glucuronate decarboxylase activity	6.60E-04
20	GO:0000293: ferric-chelate reductase activity	6.60E-04
21	GO:0004849: uridine kinase activity	7.87E-04
22	GO:0004602: glutathione peroxidase activity	7.87E-04
23	GO:0004144: diacylglycerol O-acyltransferase activity	7.87E-04
24	GO:0070403: NAD+ binding	7.87E-04
25	GO:0009881: photoreceptor activity	9.18E-04
26	GO:0015140: malate transmembrane transporter activity	9.18E-04
27	GO:0004630: phospholipase D activity	1.20E-03
28	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	1.20E-03
29	GO:0005515: protein binding	1.35E-03
30	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	1.50E-03
31	GO:0004867: serine-type endopeptidase inhibitor activity	2.56E-03
32	GO:0015144: carbohydrate transmembrane transporter activity	2.77E-03
33	GO:0051536: iron-sulfur cluster binding	2.96E-03
34	GO:0005351: sugar:proton symporter activity	3.11E-03
35	GO:0004707: MAP kinase activity	3.37E-03
36	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	4.72E-03
37	GO:0005200: structural constituent of cytoskeleton	6.49E-03
38	GO:0102483: scopolin beta-glucosidase activity	7.88E-03
39	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	8.46E-03
40	GO:0005096: GTPase activator activity	8.76E-03
41	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	9.06E-03
42	GO:0050897: cobalt ion binding	9.36E-03
43	GO:0004842: ubiquitin-protein transferase activity	9.78E-03
44	GO:0008422: beta-glucosidase activity	1.06E-02
45	GO:0000149: SNARE binding	1.06E-02
46	GO:0050661: NADP binding	1.09E-02
47	GO:0005484: SNAP receptor activity	1.19E-02
48	GO:0005198: structural molecule activity	1.30E-02
49	GO:0031625: ubiquitin protein ligase binding	1.58E-02
50	GO:0005507: copper ion binding	2.28E-02
51	GO:0003824: catalytic activity	3.55E-02
52	GO:0061630: ubiquitin protein ligase activity	4.60E-02

Rank	GO Term	Adjusted P value
1	GO:0015630: microtubule cytoskeleton	3.17E-04
2	GO:0033179: proton-transporting V-type ATPase, V0 domain	4.24E-04
3	GO:0030140: trans-Golgi network transport vesicle	6.60E-04
4	GO:0000815: ESCRT III complex	7.87E-04
5	GO:0005811: lipid particle	1.20E-03
6	GO:0000307: cyclin-dependent protein kinase holoenzyme complex	1.20E-03
7	GO:0005742: mitochondrial outer membrane translocase complex	1.20E-03
8	GO:0005886: plasma membrane	1.21E-03
9	GO:0005737: cytoplasm	1.53E-03
10	GO:0009705: plant-type vacuole membrane	3.19E-03
11	GO:0005829: cytosol	3.24E-03
12	GO:0005741: mitochondrial outer membrane	3.37E-03
13	GO:0005744: mitochondrial inner membrane presequence translocase complex	4.03E-03
14	GO:0005770: late endosome	4.72E-03
15	GO:0031965: nuclear membrane	5.21E-03
16	GO:0000325: plant-type vacuole	9.36E-03
17	GO:0031902: late endosome membrane	1.13E-02
18	GO:0031201: SNARE complex	1.13E-02
19	GO:0031966: mitochondrial membrane	1.40E-02
20	GO:0005777: peroxisome	1.83E-02
21	GO:0005623: cell	2.26E-02
22	GO:0005615: extracellular space	3.03E-02
23	GO:0016021: integral component of membrane	3.75E-02
24	GO:0031969: chloroplast membrane	4.44E-02
25	GO:0009941: chloroplast envelope	4.53E-02
26	GO:0005789: endoplasmic reticulum membrane	4.92E-02