GO Enrichment Analysis of Co-expressed Genes with
AT1G54350
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 2 | GO:0006780: uroporphyrinogen III biosynthetic process | 0.00E+00 |
| 3 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 4 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 5 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 6 | GO:0071482: cellular response to light stimulus | 2.16E-05 |
| 7 | GO:0000481: maturation of 5S rRNA | 4.60E-05 |
| 8 | GO:0034337: RNA folding | 4.60E-05 |
| 9 | GO:0000023: maltose metabolic process | 4.60E-05 |
| 10 | GO:0006415: translational termination | 4.81E-05 |
| 11 | GO:0005983: starch catabolic process | 5.65E-05 |
| 12 | GO:0015979: photosynthesis | 8.08E-05 |
| 13 | GO:0009629: response to gravity | 1.13E-04 |
| 14 | GO:0007154: cell communication | 1.13E-04 |
| 15 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 1.13E-04 |
| 16 | GO:0010270: photosystem II oxygen evolving complex assembly | 1.13E-04 |
| 17 | GO:0034755: iron ion transmembrane transport | 1.13E-04 |
| 18 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.23E-04 |
| 19 | GO:0006518: peptide metabolic process | 1.95E-04 |
| 20 | GO:0006000: fructose metabolic process | 1.95E-04 |
| 21 | GO:2001141: regulation of RNA biosynthetic process | 2.85E-04 |
| 22 | GO:0006020: inositol metabolic process | 2.85E-04 |
| 23 | GO:0009152: purine ribonucleotide biosynthetic process | 2.85E-04 |
| 24 | GO:0046653: tetrahydrofolate metabolic process | 2.85E-04 |
| 25 | GO:0016556: mRNA modification | 2.85E-04 |
| 26 | GO:0006021: inositol biosynthetic process | 3.84E-04 |
| 27 | GO:0010021: amylopectin biosynthetic process | 3.84E-04 |
| 28 | GO:0015994: chlorophyll metabolic process | 3.84E-04 |
| 29 | GO:0010027: thylakoid membrane organization | 4.15E-04 |
| 30 | GO:0080110: sporopollenin biosynthetic process | 4.88E-04 |
| 31 | GO:0018298: protein-chromophore linkage | 5.38E-04 |
| 32 | GO:0042549: photosystem II stabilization | 5.98E-04 |
| 33 | GO:0016554: cytidine to uridine editing | 5.98E-04 |
| 34 | GO:0006828: manganese ion transport | 5.98E-04 |
| 35 | GO:0046855: inositol phosphate dephosphorylation | 5.98E-04 |
| 36 | GO:0009637: response to blue light | 6.76E-04 |
| 37 | GO:0009082: branched-chain amino acid biosynthetic process | 7.13E-04 |
| 38 | GO:0009099: valine biosynthetic process | 7.13E-04 |
| 39 | GO:0009645: response to low light intensity stimulus | 8.33E-04 |
| 40 | GO:0010196: nonphotochemical quenching | 8.33E-04 |
| 41 | GO:0010114: response to red light | 8.61E-04 |
| 42 | GO:0032508: DNA duplex unwinding | 9.57E-04 |
| 43 | GO:0009097: isoleucine biosynthetic process | 1.09E-03 |
| 44 | GO:0032544: plastid translation | 1.09E-03 |
| 45 | GO:0017004: cytochrome complex assembly | 1.09E-03 |
| 46 | GO:0006002: fructose 6-phosphate metabolic process | 1.09E-03 |
| 47 | GO:0009657: plastid organization | 1.09E-03 |
| 48 | GO:0008152: metabolic process | 1.20E-03 |
| 49 | GO:0034765: regulation of ion transmembrane transport | 1.22E-03 |
| 50 | GO:0000373: Group II intron splicing | 1.22E-03 |
| 51 | GO:0006779: porphyrin-containing compound biosynthetic process | 1.36E-03 |
| 52 | GO:0009098: leucine biosynthetic process | 1.36E-03 |
| 53 | GO:1900865: chloroplast RNA modification | 1.36E-03 |
| 54 | GO:0006782: protoporphyrinogen IX biosynthetic process | 1.51E-03 |
| 55 | GO:0006879: cellular iron ion homeostasis | 1.66E-03 |
| 56 | GO:0006352: DNA-templated transcription, initiation | 1.66E-03 |
| 57 | GO:0009750: response to fructose | 1.66E-03 |
| 58 | GO:0006816: calcium ion transport | 1.66E-03 |
| 59 | GO:0006790: sulfur compound metabolic process | 1.81E-03 |
| 60 | GO:0006094: gluconeogenesis | 1.98E-03 |
| 61 | GO:0005986: sucrose biosynthetic process | 1.98E-03 |
| 62 | GO:0010207: photosystem II assembly | 2.14E-03 |
| 63 | GO:0046854: phosphatidylinositol phosphorylation | 2.31E-03 |
| 64 | GO:0009451: RNA modification | 2.80E-03 |
| 65 | GO:0016575: histone deacetylation | 2.85E-03 |
| 66 | GO:0061077: chaperone-mediated protein folding | 3.04E-03 |
| 67 | GO:0010584: pollen exine formation | 3.63E-03 |
| 68 | GO:0042391: regulation of membrane potential | 4.04E-03 |
| 69 | GO:0009658: chloroplast organization | 4.21E-03 |
| 70 | GO:0006814: sodium ion transport | 4.47E-03 |
| 71 | GO:0019252: starch biosynthetic process | 4.68E-03 |
| 72 | GO:0071805: potassium ion transmembrane transport | 5.84E-03 |
| 73 | GO:0042128: nitrate assimilation | 6.82E-03 |
| 74 | GO:0015995: chlorophyll biosynthetic process | 7.08E-03 |
| 75 | GO:0016311: dephosphorylation | 7.34E-03 |
| 76 | GO:0032259: methylation | 7.36E-03 |
| 77 | GO:0010218: response to far red light | 8.14E-03 |
| 78 | GO:0009853: photorespiration | 8.96E-03 |
| 79 | GO:0009644: response to high light intensity | 1.13E-02 |
| 80 | GO:0006813: potassium ion transport | 1.32E-02 |
| 81 | GO:0009793: embryo development ending in seed dormancy | 1.54E-02 |
| 82 | GO:0009624: response to nematode | 1.70E-02 |
| 83 | GO:0006396: RNA processing | 1.73E-02 |
| 84 | GO:0009058: biosynthetic process | 2.07E-02 |
| 85 | GO:0040008: regulation of growth | 2.42E-02 |
| 86 | GO:0009409: response to cold | 3.75E-02 |
| 87 | GO:0006810: transport | 4.06E-02 |
| 88 | GO:0045454: cell redox homeostasis | 4.52E-02 |
| 89 | GO:0006869: lipid transport | 4.83E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 2 | GO:0004852: uroporphyrinogen-III synthase activity | 0.00E+00 |
| 3 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 4 | GO:0005363: maltose transmembrane transporter activity | 0.00E+00 |
| 5 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 6 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 7 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 8 | GO:0016149: translation release factor activity, codon specific | 1.23E-06 |
| 9 | GO:0004033: aldo-keto reductase (NADP) activity | 1.67E-05 |
| 10 | GO:0003747: translation release factor activity | 2.71E-05 |
| 11 | GO:0031409: pigment binding | 9.77E-05 |
| 12 | GO:0047746: chlorophyllase activity | 1.13E-04 |
| 13 | GO:0052832: inositol monophosphate 3-phosphatase activity | 1.13E-04 |
| 14 | GO:0033201: alpha-1,4-glucan synthase activity | 1.13E-04 |
| 15 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 1.13E-04 |
| 16 | GO:0008934: inositol monophosphate 1-phosphatase activity | 1.13E-04 |
| 17 | GO:0052833: inositol monophosphate 4-phosphatase activity | 1.13E-04 |
| 18 | GO:0004519: endonuclease activity | 1.48E-04 |
| 19 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 1.95E-04 |
| 20 | GO:0008864: formyltetrahydrofolate deformylase activity | 1.95E-04 |
| 21 | GO:0004373: glycogen (starch) synthase activity | 1.95E-04 |
| 22 | GO:0048487: beta-tubulin binding | 2.85E-04 |
| 23 | GO:0052656: L-isoleucine transaminase activity | 2.85E-04 |
| 24 | GO:0052654: L-leucine transaminase activity | 2.85E-04 |
| 25 | GO:0008508: bile acid:sodium symporter activity | 2.85E-04 |
| 26 | GO:0052655: L-valine transaminase activity | 2.85E-04 |
| 27 | GO:0009011: starch synthase activity | 3.84E-04 |
| 28 | GO:0004659: prenyltransferase activity | 3.84E-04 |
| 29 | GO:0001053: plastid sigma factor activity | 3.84E-04 |
| 30 | GO:0005319: lipid transporter activity | 3.84E-04 |
| 31 | GO:0016987: sigma factor activity | 3.84E-04 |
| 32 | GO:0004084: branched-chain-amino-acid transaminase activity | 3.84E-04 |
| 33 | GO:0016168: chlorophyll binding | 4.38E-04 |
| 34 | GO:0003723: RNA binding | 4.51E-04 |
| 35 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 4.88E-04 |
| 36 | GO:0004222: metalloendopeptidase activity | 5.92E-04 |
| 37 | GO:0005242: inward rectifier potassium channel activity | 7.13E-04 |
| 38 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 7.13E-04 |
| 39 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 1.09E-03 |
| 40 | GO:0005381: iron ion transmembrane transporter activity | 1.36E-03 |
| 41 | GO:0005384: manganese ion transmembrane transporter activity | 1.36E-03 |
| 42 | GO:0015386: potassium:proton antiporter activity | 1.66E-03 |
| 43 | GO:0015095: magnesium ion transmembrane transporter activity | 1.98E-03 |
| 44 | GO:0004407: histone deacetylase activity | 2.67E-03 |
| 45 | GO:0005528: FK506 binding | 2.67E-03 |
| 46 | GO:0015079: potassium ion transmembrane transporter activity | 2.85E-03 |
| 47 | GO:0016787: hydrolase activity | 3.08E-03 |
| 48 | GO:0030551: cyclic nucleotide binding | 4.04E-03 |
| 49 | GO:0008168: methyltransferase activity | 4.05E-03 |
| 50 | GO:0050662: coenzyme binding | 4.47E-03 |
| 51 | GO:0008237: metallopeptidase activity | 5.84E-03 |
| 52 | GO:0003824: catalytic activity | 5.99E-03 |
| 53 | GO:0004721: phosphoprotein phosphatase activity | 7.08E-03 |
| 54 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.13E-02 |
| 55 | GO:0043621: protein self-association | 1.13E-02 |
| 56 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.19E-02 |
| 57 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.32E-02 |
| 58 | GO:0042802: identical protein binding | 2.97E-02 |
| 59 | GO:0005215: transporter activity | 3.07E-02 |
| 60 | GO:0046872: metal ion binding | 3.38E-02 |
| 61 | GO:0042803: protein homodimerization activity | 4.68E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.62E-29 |
| 2 | GO:0009941: chloroplast envelope | 3.53E-12 |
| 3 | GO:0009570: chloroplast stroma | 4.74E-10 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 9.92E-08 |
| 5 | GO:0043190: ATP-binding cassette (ABC) transporter complex | 4.60E-05 |
| 6 | GO:0009782: photosystem I antenna complex | 4.60E-05 |
| 7 | GO:0031969: chloroplast membrane | 6.32E-05 |
| 8 | GO:0030076: light-harvesting complex | 8.62E-05 |
| 9 | GO:0009534: chloroplast thylakoid | 4.48E-04 |
| 10 | GO:0009501: amyloplast | 9.57E-04 |
| 11 | GO:0043231: intracellular membrane-bounded organelle | 1.20E-03 |
| 12 | GO:0009706: chloroplast inner membrane | 1.60E-03 |
| 13 | GO:0032040: small-subunit processome | 1.81E-03 |
| 14 | GO:0010287: plastoglobule | 1.89E-03 |
| 15 | GO:0042651: thylakoid membrane | 2.85E-03 |
| 16 | GO:0009522: photosystem I | 4.47E-03 |
| 17 | GO:0009523: photosystem II | 4.68E-03 |
| 18 | GO:0030529: intracellular ribonucleoprotein complex | 6.32E-03 |
| 19 | GO:0009707: chloroplast outer membrane | 7.60E-03 |
| 20 | GO:0009579: thylakoid | 1.64E-02 |
| 21 | GO:0009543: chloroplast thylakoid lumen | 1.99E-02 |