co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G54320

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010111: glyoxysome organization	0.00E+00
2	GO:0017186: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase	0.00E+00
3	GO:0070482: response to oxygen levels	0.00E+00
4	GO:2001253: regulation of histone H3-K36 trimethylation	0.00E+00
5	GO:0006987: activation of signaling protein activity involved in unfolded protein response	0.00E+00
6	GO:0060213: positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	0.00E+00
7	GO:0000390: spliceosomal complex disassembly	0.00E+00
8	GO:0010793: regulation of mRNA export from nucleus	0.00E+00
9	GO:0016236: macroautophagy	0.00E+00
10	GO:0033539: fatty acid beta-oxidation using acyl-CoA dehydrogenase	0.00E+00
11	GO:0071816: tail-anchored membrane protein insertion into ER membrane	0.00E+00
12	GO:0033320: UDP-D-xylose biosynthetic process	1.36E-05
13	GO:0042732: D-xylose metabolic process	3.36E-05
14	GO:0006891: intra-Golgi vesicle-mediated transport	7.14E-05
15	GO:0030242: pexophagy	1.27E-04
16	GO:0043687: post-translational protein modification	1.27E-04
17	GO:0019673: GDP-mannose metabolic process	1.27E-04
18	GO:0032469: endoplasmic reticulum calcium ion homeostasis	1.27E-04
19	GO:0000291: nuclear-transcribed mRNA catabolic process, exonucleolytic	1.27E-04
20	GO:0050684: regulation of mRNA processing	2.94E-04
21	GO:0007584: response to nutrient	2.94E-04
22	GO:0045948: positive regulation of translational initiation	2.94E-04
23	GO:0034398: telomere tethering at nuclear periphery	2.94E-04
24	GO:0019395: fatty acid oxidation	2.94E-04
25	GO:0009225: nucleotide-sugar metabolic process	3.60E-04
26	GO:0006406: mRNA export from nucleus	4.45E-04
27	GO:0032012: regulation of ARF protein signal transduction	4.86E-04
28	GO:0032784: regulation of DNA-templated transcription, elongation	4.86E-04
29	GO:0042351: 'de novo' GDP-L-fucose biosynthetic process	4.86E-04
30	GO:0019048: modulation by virus of host morphology or physiology	6.95E-04
31	GO:0051601: exocyst localization	6.95E-04
32	GO:0000973: posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery	6.95E-04
33	GO:0051028: mRNA transport	7.51E-04
34	GO:0042273: ribosomal large subunit biogenesis	9.21E-04
35	GO:0010107: potassium ion import	9.21E-04
36	GO:0045324: late endosome to vacuole transport	9.21E-04
37	GO:0006542: glutamine biosynthetic process	9.21E-04
38	GO:0006623: protein targeting to vacuole	9.96E-04
39	GO:0007029: endoplasmic reticulum organization	1.16E-03
40	GO:0018279: protein N-linked glycosylation via asparagine	1.16E-03
41	GO:0006397: mRNA processing	1.19E-03
42	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.43E-03
43	GO:0006574: valine catabolic process	1.43E-03
44	GO:0006014: D-ribose metabolic process	1.43E-03
45	GO:0006751: glutathione catabolic process	1.43E-03
46	GO:0033962: cytoplasmic mRNA processing body assembly	1.71E-03
47	GO:0048280: vesicle fusion with Golgi apparatus	1.71E-03
48	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.01E-03
49	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	2.01E-03
50	GO:0006605: protein targeting	2.32E-03
51	GO:0006102: isocitrate metabolic process	2.32E-03
52	GO:0016051: carbohydrate biosynthetic process	2.48E-03
53	GO:0006972: hyperosmotic response	2.65E-03
54	GO:0060321: acceptance of pollen	2.65E-03
55	GO:0048193: Golgi vesicle transport	2.65E-03
56	GO:0006367: transcription initiation from RNA polymerase II promoter	2.65E-03
57	GO:0030968: endoplasmic reticulum unfolded protein response	2.65E-03
58	GO:0006098: pentose-phosphate shunt	3.00E-03
59	GO:0010629: negative regulation of gene expression	3.73E-03
60	GO:0006896: Golgi to vacuole transport	3.73E-03
61	GO:0009870: defense response signaling pathway, resistance gene-dependent	3.73E-03
62	GO:0046777: protein autophosphorylation	3.93E-03
63	GO:0009846: pollen germination	3.99E-03
64	GO:0030148: sphingolipid biosynthetic process	4.12E-03
65	GO:0045037: protein import into chloroplast stroma	4.52E-03
66	GO:0010105: negative regulation of ethylene-activated signaling pathway	4.52E-03
67	GO:0006886: intracellular protein transport	4.71E-03
68	GO:0006829: zinc II ion transport	4.93E-03
69	GO:2000012: regulation of auxin polar transport	4.93E-03
70	GO:0010102: lateral root morphogenesis	4.93E-03
71	GO:0055046: microgametogenesis	4.93E-03
72	GO:0034976: response to endoplasmic reticulum stress	6.25E-03
73	GO:0018105: peptidyl-serine phosphorylation	6.27E-03
74	GO:0051726: regulation of cell cycle	6.45E-03
75	GO:0009742: brassinosteroid mediated signaling pathway	6.45E-03
76	GO:0000398: mRNA splicing, via spliceosome	7.02E-03
77	GO:0009695: jasmonic acid biosynthetic process	7.19E-03
78	GO:0031408: oxylipin biosynthetic process	7.68E-03
79	GO:0009561: megagametogenesis	9.21E-03
80	GO:0009306: protein secretion	9.21E-03
81	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	9.75E-03
82	GO:0042147: retrograde transport, endosome to Golgi	9.75E-03
83	GO:0010118: stomatal movement	1.03E-02
84	GO:0006606: protein import into nucleus	1.03E-02
85	GO:0010501: RNA secondary structure unwinding	1.03E-02
86	GO:0000413: protein peptidyl-prolyl isomerization	1.03E-02
87	GO:0015031: protein transport	1.11E-02
88	GO:0048544: recognition of pollen	1.14E-02
89	GO:0042752: regulation of circadian rhythm	1.14E-02
90	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.18E-02
91	GO:0010183: pollen tube guidance	1.20E-02
92	GO:0019252: starch biosynthetic process	1.20E-02
93	GO:0008380: RNA splicing	1.26E-02
94	GO:0006635: fatty acid beta-oxidation	1.26E-02
95	GO:0035556: intracellular signal transduction	1.31E-02
96	GO:0010583: response to cyclopentenone	1.32E-02
97	GO:0016032: viral process	1.32E-02
98	GO:0032502: developmental process	1.32E-02
99	GO:0009630: gravitropism	1.32E-02
100	GO:0006904: vesicle docking involved in exocytosis	1.50E-02
101	GO:0009816: defense response to bacterium, incompatible interaction	1.70E-02
102	GO:0006970: response to osmotic stress	1.76E-02
103	GO:0042128: nitrate assimilation	1.77E-02
104	GO:0006888: ER to Golgi vesicle-mediated transport	1.83E-02
105	GO:0048573: photoperiodism, flowering	1.83E-02
106	GO:0016049: cell growth	1.90E-02
107	GO:0048767: root hair elongation	2.04E-02
108	GO:0006499: N-terminal protein myristoylation	2.11E-02
109	GO:0009910: negative regulation of flower development	2.19E-02
110	GO:0006099: tricarboxylic acid cycle	2.41E-02
111	GO:0045454: cell redox homeostasis	2.43E-02
112	GO:0006468: protein phosphorylation	2.49E-02
113	GO:0030001: metal ion transport	2.56E-02
114	GO:0006897: endocytosis	2.64E-02
115	GO:0006887: exocytosis	2.64E-02
116	GO:0009744: response to sucrose	2.80E-02
117	GO:0000209: protein polyubiquitination	2.88E-02
118	GO:0016310: phosphorylation	2.97E-02
119	GO:0006979: response to oxidative stress	3.01E-02
120	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	3.20E-02
121	GO:0051603: proteolysis involved in cellular protein catabolic process	3.54E-02
122	GO:0006417: regulation of translation	3.72E-02
123	GO:0006508: proteolysis	4.11E-02

Rank	GO Term	Adjusted P value
1	GO:1990446: U1 snRNP binding	0.00E+00
2	GO:0017168: 5-oxoprolinase (ATP-hydrolyzing) activity	0.00E+00
3	GO:0051766: inositol trisphosphate kinase activity	0.00E+00
4	GO:0008901: ferredoxin hydrogenase activity	0.00E+00
5	GO:0051765: inositol tetrakisphosphate kinase activity	0.00E+00
6	GO:0000384: first spliceosomal transesterification activity	0.00E+00
7	GO:0016603: glutaminyl-peptide cyclotransferase activity	0.00E+00
8	GO:0048040: UDP-glucuronate decarboxylase activity	3.36E-05
9	GO:0070403: NAD+ binding	4.74E-05
10	GO:0000824: inositol tetrakisphosphate 3-kinase activity	1.27E-04
11	GO:0008446: GDP-mannose 4,6-dehydratase activity	1.27E-04
12	GO:0047326: inositol tetrakisphosphate 5-kinase activity	1.27E-04
13	GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity	1.27E-04
14	GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity	1.27E-04
15	GO:0003729: mRNA binding	2.44E-04
16	GO:0003988: acetyl-CoA C-acyltransferase activity	2.94E-04
17	GO:0045140: inositol phosphoceramide synthase activity	2.94E-04
18	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	4.86E-04
19	GO:0004180: carboxypeptidase activity	4.86E-04
20	GO:0005047: signal recognition particle binding	4.86E-04
21	GO:0004449: isocitrate dehydrogenase (NAD+) activity	6.95E-04
22	GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity	6.95E-04
23	GO:0005086: ARF guanyl-nucleotide exchange factor activity	9.21E-04
24	GO:0004576: oligosaccharyl transferase activity	9.21E-04
25	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.16E-03
26	GO:0004356: glutamate-ammonia ligase activity	1.16E-03
27	GO:0008565: protein transporter activity	1.32E-03
28	GO:0031369: translation initiation factor binding	1.43E-03
29	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.69E-03
30	GO:0003950: NAD+ ADP-ribosyltransferase activity	1.71E-03
31	GO:0004747: ribokinase activity	1.71E-03
32	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.71E-03
33	GO:0003730: mRNA 3'-UTR binding	1.71E-03
34	GO:0004004: ATP-dependent RNA helicase activity	1.78E-03
35	GO:0004683: calmodulin-dependent protein kinase activity	1.78E-03
36	GO:0005085: guanyl-nucleotide exchange factor activity	2.01E-03
37	GO:0015288: porin activity	2.32E-03
38	GO:0004869: cysteine-type endopeptidase inhibitor activity	2.32E-03
39	GO:0008865: fructokinase activity	2.32E-03
40	GO:0017056: structural constituent of nuclear pore	2.32E-03
41	GO:0005267: potassium channel activity	2.65E-03
42	GO:0000149: SNARE binding	2.71E-03
43	GO:0045309: protein phosphorylated amino acid binding	3.36E-03
44	GO:0005487: nucleocytoplasmic transporter activity	3.36E-03
45	GO:0015020: glucuronosyltransferase activity	3.73E-03
46	GO:0004713: protein tyrosine kinase activity	3.73E-03
47	GO:0005524: ATP binding	3.87E-03
48	GO:0019904: protein domain specific binding	4.12E-03
49	GO:0004521: endoribonuclease activity	4.52E-03
50	GO:0005262: calcium channel activity	4.93E-03
51	GO:0008139: nuclear localization sequence binding	4.93E-03
52	GO:0009055: electron carrier activity	6.46E-03
53	GO:0003676: nucleic acid binding	7.43E-03
54	GO:0004176: ATP-dependent peptidase activity	7.68E-03
55	GO:0016301: kinase activity	8.25E-03
56	GO:0003756: protein disulfide isomerase activity	9.21E-03
57	GO:0003727: single-stranded RNA binding	9.21E-03
58	GO:0003723: RNA binding	9.46E-03
59	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	1.09E-02
60	GO:0001085: RNA polymerase II transcription factor binding	1.09E-02
61	GO:0046873: metal ion transmembrane transporter activity	1.09E-02
62	GO:0016853: isomerase activity	1.14E-02
63	GO:0004872: receptor activity	1.20E-02
64	GO:0008237: metallopeptidase activity	1.50E-02
65	GO:0008375: acetylglucosaminyltransferase activity	1.77E-02
66	GO:0050660: flavin adenine dinucleotide binding	1.89E-02
67	GO:0008236: serine-type peptidase activity	1.90E-02
68	GO:0005507: copper ion binding	1.92E-02
69	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.97E-02
70	GO:0005515: protein binding	2.08E-02
71	GO:0004222: metalloendopeptidase activity	2.11E-02
72	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	2.19E-02
73	GO:0050897: cobalt ion binding	2.19E-02
74	GO:0005525: GTP binding	2.30E-02
75	GO:0003697: single-stranded DNA binding	2.33E-02
76	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.48E-02
77	GO:0051539: 4 iron, 4 sulfur cluster binding	2.56E-02
78	GO:0005484: SNAP receptor activity	2.80E-02
79	GO:0043621: protein self-association	2.96E-02
80	GO:0003924: GTPase activity	2.99E-02
81	GO:0004674: protein serine/threonine kinase activity	3.01E-02
82	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.12E-02
83	GO:0051287: NAD binding	3.20E-02
84	GO:0003824: catalytic activity	3.34E-02
85	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.46E-02
86	GO:0045735: nutrient reservoir activity	3.89E-02
87	GO:0015035: protein disulfide oxidoreductase activity	4.53E-02
88	GO:0016746: transferase activity, transferring acyl groups	4.53E-02
89	GO:0008026: ATP-dependent helicase activity	4.63E-02
90	GO:0004672: protein kinase activity	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0005785: signal recognition particle receptor complex	0.00E+00
2	GO:0071561: nucleus-vacuole junction	0.00E+00
3	GO:0070274: RES complex	0.00E+00
4	GO:0031981: nuclear lumen	0.00E+00
5	GO:0071008: U2-type post-mRNA release spliceosomal complex	0.00E+00
6	GO:0005783: endoplasmic reticulum	7.39E-05
7	GO:0034272: phosphatidylinositol 3-kinase complex, class III, type II	1.27E-04
8	GO:0034271: phosphatidylinositol 3-kinase complex, class III, type I	1.27E-04
9	GO:0005829: cytosol	1.87E-04
10	GO:0042406: extrinsic component of endoplasmic reticulum membrane	4.86E-04
11	GO:0044614: nuclear pore cytoplasmic filaments	4.86E-04
12	GO:0005886: plasma membrane	7.86E-04
13	GO:0005770: late endosome	8.70E-04
14	GO:0008250: oligosaccharyltransferase complex	1.16E-03
15	GO:0030140: trans-Golgi network transport vesicle	1.43E-03
16	GO:0000932: P-body	1.51E-03
17	GO:0005794: Golgi apparatus	1.54E-03
18	GO:0030173: integral component of Golgi membrane	1.71E-03
19	GO:0016363: nuclear matrix	1.71E-03
20	GO:0030687: preribosome, large subunit precursor	2.01E-03
21	GO:0030131: clathrin adaptor complex	2.32E-03
22	GO:0012507: ER to Golgi transport vesicle membrane	2.32E-03
23	GO:0009514: glyoxysome	2.65E-03
24	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	2.65E-03
25	GO:0010494: cytoplasmic stress granule	3.00E-03
26	GO:0016604: nuclear body	3.36E-03
27	GO:0071011: precatalytic spliceosome	3.36E-03
28	GO:0030125: clathrin vesicle coat	3.73E-03
29	GO:0005686: U2 snRNP	3.73E-03
30	GO:0005789: endoplasmic reticulum membrane	4.02E-03
31	GO:0071013: catalytic step 2 spliceosome	4.12E-03
32	GO:0005665: DNA-directed RNA polymerase II, core complex	4.52E-03
33	GO:0005802: trans-Golgi network	5.43E-03
34	GO:0030176: integral component of endoplasmic reticulum membrane	5.80E-03
35	GO:0005795: Golgi stack	5.80E-03
36	GO:0005622: intracellular	6.35E-03
37	GO:0005905: clathrin-coated pit	7.68E-03
38	GO:0005744: mitochondrial inner membrane presequence translocase complex	9.21E-03
39	GO:0031965: nuclear membrane	1.20E-02
40	GO:0000145: exocyst	1.32E-02
41	GO:0032580: Golgi cisterna membrane	1.44E-02
42	GO:0005774: vacuolar membrane	1.66E-02
43	GO:0005788: endoplasmic reticulum lumen	1.70E-02
44	GO:0005667: transcription factor complex	1.77E-02
45	GO:0005643: nuclear pore	1.97E-02
46	GO:0000325: plant-type vacuole	2.19E-02
47	GO:0015934: large ribosomal subunit	2.19E-02
48	GO:0031201: SNARE complex	2.64E-02
49	GO:0031902: late endosome membrane	2.64E-02
50	GO:0090406: pollen tube	2.80E-02
51	GO:0005856: cytoskeleton	3.04E-02
52	GO:0016021: integral component of membrane	3.40E-02
53	GO:0005635: nuclear envelope	3.63E-02
54	GO:0005681: spliceosomal complex	3.89E-02
55	GO:0005747: mitochondrial respiratory chain complex I	3.98E-02
56	GO:0016607: nuclear speck	3.98E-02
57	GO:0009706: chloroplast inner membrane	4.44E-02