Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G53840

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042493: response to drug0.00E+00
2GO:0090627: plant epidermal cell differentiation0.00E+00
3GO:0009831: plant-type cell wall modification involved in multidimensional cell growth5.39E-06
4GO:0009958: positive gravitropism9.36E-06
5GO:0009772: photosynthetic electron transport in photosystem II1.82E-05
6GO:0009828: plant-type cell wall loosening1.85E-05
7GO:0015995: chlorophyll biosynthetic process3.23E-05
8GO:2000012: regulation of auxin polar transport9.21E-05
9GO:0009664: plant-type cell wall organization1.13E-04
10GO:0015979: photosynthesis1.38E-04
11GO:0001736: establishment of planar polarity1.41E-04
12GO:0043255: regulation of carbohydrate biosynthetic process1.41E-04
13GO:0010541: acropetal auxin transport1.41E-04
14GO:0009624: response to nematode2.06E-04
15GO:0010160: formation of animal organ boundary2.40E-04
16GO:0090391: granum assembly2.40E-04
17GO:0080055: low-affinity nitrate transport2.40E-04
18GO:0051513: regulation of monopolar cell growth3.49E-04
19GO:0043481: anthocyanin accumulation in tissues in response to UV light3.49E-04
20GO:0009650: UV protection3.49E-04
21GO:1901332: negative regulation of lateral root development3.49E-04
22GO:0045490: pectin catabolic process4.24E-04
23GO:0009735: response to cytokinin4.65E-04
24GO:0045727: positive regulation of translation4.66E-04
25GO:0022622: root system development4.66E-04
26GO:0007166: cell surface receptor signaling pathway5.03E-04
27GO:0010438: cellular response to sulfur starvation5.92E-04
28GO:0030308: negative regulation of cell growth5.92E-04
29GO:0045893: positive regulation of transcription, DNA-templated6.58E-04
30GO:0009826: unidimensional cell growth7.00E-04
31GO:0009913: epidermal cell differentiation7.24E-04
32GO:0060918: auxin transport7.24E-04
33GO:0010337: regulation of salicylic acid metabolic process7.24E-04
34GO:0009759: indole glucosinolate biosynthetic process7.24E-04
35GO:0010311: lateral root formation7.51E-04
36GO:0048527: lateral root development8.23E-04
37GO:0009637: response to blue light8.97E-04
38GO:0032880: regulation of protein localization1.01E-03
39GO:0010196: nonphotochemical quenching1.01E-03
40GO:0009926: auxin polar transport1.14E-03
41GO:0032544: plastid translation1.32E-03
42GO:0048829: root cap development1.83E-03
43GO:0006949: syncytium formation1.83E-03
44GO:0009733: response to auxin1.83E-03
45GO:0006032: chitin catabolic process1.83E-03
46GO:0018119: peptidyl-cysteine S-nitrosylation2.02E-03
47GO:0048765: root hair cell differentiation2.02E-03
48GO:0009773: photosynthetic electron transport in photosystem I2.02E-03
49GO:0008361: regulation of cell size2.21E-03
50GO:0002213: defense response to insect2.21E-03
51GO:0016024: CDP-diacylglycerol biosynthetic process2.21E-03
52GO:0009742: brassinosteroid mediated signaling pathway2.27E-03
53GO:0009734: auxin-activated signaling pathway2.38E-03
54GO:0009718: anthocyanin-containing compound biosynthetic process2.41E-03
55GO:0010102: lateral root morphogenesis2.41E-03
56GO:0010540: basipetal auxin transport2.62E-03
57GO:0010143: cutin biosynthetic process2.62E-03
58GO:0010030: positive regulation of seed germination2.82E-03
59GO:0010053: root epidermal cell differentiation2.82E-03
60GO:0009825: multidimensional cell growth2.82E-03
61GO:0010167: response to nitrate2.82E-03
62GO:0006833: water transport3.04E-03
63GO:0000162: tryptophan biosynthetic process3.04E-03
64GO:0007017: microtubule-based process3.49E-03
65GO:0016998: cell wall macromolecule catabolic process3.72E-03
66GO:0003333: amino acid transmembrane transport3.72E-03
67GO:0030245: cellulose catabolic process3.95E-03
68GO:0009411: response to UV4.20E-03
69GO:0048443: stamen development4.44E-03
70GO:0006284: base-excision repair4.44E-03
71GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.69E-03
72GO:0008284: positive regulation of cell proliferation4.69E-03
73GO:0042631: cellular response to water deprivation4.95E-03
74GO:0042335: cuticle development4.95E-03
75GO:0080022: primary root development4.95E-03
76GO:0034220: ion transmembrane transport4.95E-03
77GO:0015986: ATP synthesis coupled proton transport5.48E-03
78GO:0048825: cotyledon development5.75E-03
79GO:0048510: regulation of timing of transition from vegetative to reproductive phase6.02E-03
80GO:0016032: viral process6.31E-03
81GO:0009639: response to red or far red light6.88E-03
82GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway7.26E-03
83GO:0051607: defense response to virus7.47E-03
84GO:0010027: thylakoid membrane organization7.78E-03
85GO:0009627: systemic acquired resistance8.40E-03
86GO:0048573: photoperiodism, flowering8.71E-03
87GO:0030244: cellulose biosynthetic process9.36E-03
88GO:0010218: response to far red light1.00E-02
89GO:0016042: lipid catabolic process1.01E-02
90GO:0006468: protein phosphorylation1.04E-02
91GO:0006281: DNA repair1.04E-02
92GO:0006865: amino acid transport1.07E-02
93GO:0010114: response to red light1.32E-02
94GO:0009640: photomorphogenesis1.32E-02
95GO:0006855: drug transmembrane transport1.47E-02
96GO:0009809: lignin biosynthetic process1.63E-02
97GO:0006364: rRNA processing1.63E-02
98GO:0006857: oligopeptide transport1.71E-02
99GO:0055085: transmembrane transport2.34E-02
100GO:0009845: seed germination2.60E-02
101GO:0040008: regulation of growth2.99E-02
102GO:0009451: RNA modification3.15E-02
103GO:0009739: response to gibberellin3.35E-02
104GO:0042742: defense response to bacterium3.73E-02
105GO:0030154: cell differentiation4.06E-02
106GO:0042254: ribosome biogenesis4.28E-02
107GO:0009723: response to ethylene4.68E-02
RankGO TermAdjusted P value
1GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
2GO:0030570: pectate lyase activity5.39E-06
3GO:0080054: low-affinity nitrate transmembrane transporter activity2.40E-04
4GO:0016829: lyase activity3.09E-04
5GO:0016851: magnesium chelatase activity3.49E-04
6GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.88E-04
7GO:0010011: auxin binding4.66E-04
8GO:0010328: auxin influx transmembrane transporter activity4.66E-04
9GO:0008725: DNA-3-methyladenine glycosylase activity5.92E-04
10GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity7.24E-04
11GO:0004366: glycerol-3-phosphate O-acyltransferase activity7.24E-04
12GO:0016832: aldehyde-lyase activity8.63E-04
13GO:0004568: chitinase activity1.83E-03
14GO:0010329: auxin efflux transmembrane transporter activity2.41E-03
15GO:0008266: poly(U) RNA binding2.62E-03
16GO:0008083: growth factor activity2.62E-03
17GO:0005528: FK506 binding3.26E-03
18GO:0008810: cellulase activity4.20E-03
19GO:0042626: ATPase activity, coupled to transmembrane movement of substances4.66E-03
20GO:0046933: proton-transporting ATP synthase activity, rotational mechanism5.21E-03
21GO:0050662: coenzyme binding5.48E-03
22GO:0016788: hydrolase activity, acting on ester bonds5.77E-03
23GO:0004518: nuclease activity6.31E-03
24GO:0016791: phosphatase activity6.88E-03
25GO:0005200: structural constituent of cytoskeleton7.18E-03
26GO:0052689: carboxylic ester hydrolase activity7.75E-03
27GO:0015250: water channel activity7.78E-03
28GO:0030247: polysaccharide binding8.71E-03
29GO:0008236: serine-type peptidase activity9.03E-03
30GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.04E-02
31GO:0016301: kinase activity1.40E-02
32GO:0015293: symporter activity1.44E-02
33GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.47E-02
34GO:0015171: amino acid transmembrane transporter activity1.75E-02
35GO:0000166: nucleotide binding1.85E-02
36GO:0016746: transferase activity, transferring acyl groups2.14E-02
37GO:0019843: rRNA binding2.46E-02
38GO:0004252: serine-type endopeptidase activity2.65E-02
39GO:0005524: ATP binding2.83E-02
40GO:0005215: transporter activity4.12E-02
41GO:0043531: ADP binding4.51E-02
42GO:0050660: flavin adenine dinucleotide binding4.68E-02
RankGO TermAdjusted P value
1GO:0009534: chloroplast thylakoid5.75E-07
2GO:0005576: extracellular region5.30E-05
3GO:0009515: granal stacked thylakoid5.79E-05
4GO:0030095: chloroplast photosystem II1.06E-04
5GO:0005618: cell wall1.88E-04
6GO:0010007: magnesium chelatase complex2.40E-04
7GO:0009535: chloroplast thylakoid membrane2.57E-04
8GO:0009543: chloroplast thylakoid lumen2.79E-04
9GO:0015630: microtubule cytoskeleton3.49E-04
10GO:0009579: thylakoid6.99E-04
11GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)7.24E-04
12GO:0009986: cell surface1.01E-03
13GO:0031977: thylakoid lumen1.06E-03
14GO:0009941: chloroplast envelope1.15E-03
15GO:0090404: pollen tube tip2.02E-03
16GO:0009570: chloroplast stroma2.23E-03
17GO:0010287: plastoglobule2.54E-03
18GO:0009654: photosystem II oxygen evolving complex3.49E-03
19GO:0016020: membrane3.77E-03
20GO:0005886: plasma membrane4.91E-03
21GO:0009523: photosystem II5.75E-03
22GO:0019898: extrinsic component of membrane5.75E-03
23GO:0010319: stromule7.18E-03
24GO:0009295: nucleoid7.18E-03
25GO:0009507: chloroplast2.00E-02
26GO:0005615: extracellular space3.35E-02
27GO:0048046: apoplast3.96E-02
28GO:0009505: plant-type cell wall4.67E-02
29GO:0005874: microtubule4.80E-02
30GO:0031969: chloroplast membrane4.92E-02
Gene type



Gene DE type