co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G53730

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0060416: response to growth hormone	0.00E+00
2	GO:0010442: guard cell morphogenesis	0.00E+00
3	GO:0052541: plant-type cell wall cellulose metabolic process	9.95E-07
4	GO:0015976: carbon utilization	1.63E-05
5	GO:0032876: negative regulation of DNA endoreduplication	2.66E-05
6	GO:0042335: cuticle development	5.71E-05
7	GO:0010583: response to cyclopentenone	9.78E-05
8	GO:0009932: cell tip growth	1.22E-04
9	GO:0071370: cellular response to gibberellin stimulus	1.42E-04
10	GO:0006723: cuticle hydrocarbon biosynthetic process	1.42E-04
11	GO:0042547: cell wall modification involved in multidimensional cell growth	1.42E-04
12	GO:0016126: sterol biosynthetic process	1.52E-04
13	GO:0048829: root cap development	2.13E-04
14	GO:0000038: very long-chain fatty acid metabolic process	2.49E-04
15	GO:0060919: auxin influx	3.25E-04
16	GO:0080148: negative regulation of response to water deprivation	3.25E-04
17	GO:0006695: cholesterol biosynthetic process	3.25E-04
18	GO:0010025: wax biosynthetic process	4.63E-04
19	GO:0006071: glycerol metabolic process	4.63E-04
20	GO:0043447: alkane biosynthetic process	5.33E-04
21	GO:0010581: regulation of starch biosynthetic process	5.33E-04
22	GO:0010026: trichome differentiation	5.65E-04
23	GO:0003333: amino acid transmembrane transport	6.19E-04
24	GO:0009855: determination of bilateral symmetry	7.63E-04
25	GO:0006168: adenine salvage	7.63E-04
26	GO:0010371: regulation of gibberellin biosynthetic process	7.63E-04
27	GO:0006166: purine ribonucleoside salvage	7.63E-04
28	GO:0051016: barbed-end actin filament capping	7.63E-04
29	GO:0019722: calcium-mediated signaling	7.98E-04
30	GO:0006749: glutathione metabolic process	1.01E-03
31	GO:2000122: negative regulation of stomatal complex development	1.01E-03
32	GO:0031122: cytoplasmic microtubule organization	1.01E-03
33	GO:2000038: regulation of stomatal complex development	1.01E-03
34	GO:0006546: glycine catabolic process	1.01E-03
35	GO:0010037: response to carbon dioxide	1.01E-03
36	GO:0006085: acetyl-CoA biosynthetic process	1.01E-03
37	GO:0071554: cell wall organization or biogenesis	1.22E-03
38	GO:0044209: AMP salvage	1.28E-03
39	GO:0030308: negative regulation of cell growth	1.28E-03
40	GO:0006629: lipid metabolic process	1.39E-03
41	GO:0007267: cell-cell signaling	1.56E-03
42	GO:0010190: cytochrome b6f complex assembly	1.57E-03
43	GO:0006596: polyamine biosynthetic process	1.57E-03
44	GO:0048759: xylem vessel member cell differentiation	1.57E-03
45	GO:0006633: fatty acid biosynthetic process	1.69E-03
46	GO:0010014: meristem initiation	1.88E-03
47	GO:0045926: negative regulation of growth	1.88E-03
48	GO:2000037: regulation of stomatal complex patterning	1.88E-03
49	GO:0009955: adaxial/abaxial pattern specification	1.88E-03
50	GO:0080060: integument development	1.88E-03
51	GO:0045490: pectin catabolic process	1.90E-03
52	GO:0010411: xyloglucan metabolic process	2.05E-03
53	GO:0009645: response to low light intensity stimulus	2.21E-03
54	GO:0009610: response to symbiotic fungus	2.21E-03
55	GO:0030497: fatty acid elongation	2.21E-03
56	GO:0009690: cytokinin metabolic process	2.56E-03
57	GO:0009704: de-etiolation	2.56E-03
58	GO:0045010: actin nucleation	2.56E-03
59	GO:0007155: cell adhesion	2.56E-03
60	GO:0008610: lipid biosynthetic process	2.56E-03
61	GO:0010119: regulation of stomatal movement	2.61E-03
62	GO:0006865: amino acid transport	2.74E-03
63	GO:0009657: plastid organization	2.93E-03
64	GO:0019430: removal of superoxide radicals	2.93E-03
65	GO:0007389: pattern specification process	2.93E-03
66	GO:0033384: geranyl diphosphate biosynthetic process	3.31E-03
67	GO:0006754: ATP biosynthetic process	3.31E-03
68	GO:0000902: cell morphogenesis	3.31E-03
69	GO:0009416: response to light stimulus	3.31E-03
70	GO:0045337: farnesyl diphosphate biosynthetic process	3.31E-03
71	GO:0006631: fatty acid metabolic process	3.40E-03
72	GO:0009926: auxin polar transport	3.68E-03
73	GO:0016573: histone acetylation	3.71E-03
74	GO:0010380: regulation of chlorophyll biosynthetic process	3.71E-03
75	GO:0019538: protein metabolic process	4.12E-03
76	GO:0009870: defense response signaling pathway, resistance gene-dependent	4.12E-03
77	GO:0006535: cysteine biosynthetic process from serine	4.12E-03
78	GO:0043069: negative regulation of programmed cell death	4.12E-03
79	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.53E-03
80	GO:0006415: translational termination	4.55E-03
81	GO:0019684: photosynthesis, light reaction	4.55E-03
82	GO:0010072: primary shoot apical meristem specification	4.55E-03
83	GO:0009089: lysine biosynthetic process via diaminopimelate	4.55E-03
84	GO:0043085: positive regulation of catalytic activity	4.55E-03
85	GO:1903507: negative regulation of nucleic acid-templated transcription	4.55E-03
86	GO:0048765: root hair cell differentiation	4.55E-03
87	GO:0009773: photosynthetic electron transport in photosystem I	4.55E-03
88	GO:0008361: regulation of cell size	4.99E-03
89	GO:0006790: sulfur compound metabolic process	4.99E-03
90	GO:0030036: actin cytoskeleton organization	5.45E-03
91	GO:0050826: response to freezing	5.45E-03
92	GO:0005985: sucrose metabolic process	6.41E-03
93	GO:0046854: phosphatidylinositol phosphorylation	6.41E-03
94	GO:0010053: root epidermal cell differentiation	6.41E-03
95	GO:0009969: xyloglucan biosynthetic process	6.41E-03
96	GO:0009825: multidimensional cell growth	6.41E-03
97	GO:0010167: response to nitrate	6.41E-03
98	GO:0006833: water transport	6.91E-03
99	GO:0006338: chromatin remodeling	7.42E-03
100	GO:0009944: polarity specification of adaxial/abaxial axis	7.42E-03
101	GO:0019344: cysteine biosynthetic process	7.42E-03
102	GO:0007017: microtubule-based process	7.95E-03
103	GO:0009768: photosynthesis, light harvesting in photosystem I	7.95E-03
104	GO:0010431: seed maturation	8.49E-03
105	GO:0009814: defense response, incompatible interaction	9.05E-03
106	GO:2000022: regulation of jasmonic acid mediated signaling pathway	9.05E-03
107	GO:0042744: hydrogen peroxide catabolic process	1.00E-02
108	GO:0006284: base-excision repair	1.02E-02
109	GO:0000271: polysaccharide biosynthetic process	1.14E-02
110	GO:0080022: primary root development	1.14E-02
111	GO:0034220: ion transmembrane transport	1.14E-02
112	GO:0010051: xylem and phloem pattern formation	1.14E-02
113	GO:0010087: phloem or xylem histogenesis	1.14E-02
114	GO:0042631: cellular response to water deprivation	1.14E-02
115	GO:0000226: microtubule cytoskeleton organization	1.14E-02
116	GO:0009741: response to brassinosteroid	1.20E-02
117	GO:0045489: pectin biosynthetic process	1.20E-02
118	GO:0048235: pollen sperm cell differentiation	1.46E-02
119	GO:0032502: developmental process	1.46E-02
120	GO:0007264: small GTPase mediated signal transduction	1.46E-02
121	GO:0010090: trichome morphogenesis	1.53E-02
122	GO:1901657: glycosyl compound metabolic process	1.53E-02
123	GO:0006810: transport	1.72E-02
124	GO:0009607: response to biotic stimulus	1.88E-02
125	GO:0042128: nitrate assimilation	1.96E-02
126	GO:0055085: transmembrane transport	1.99E-02
127	GO:0018298: protein-chromophore linkage	2.19E-02
128	GO:0008219: cell death	2.19E-02
129	GO:0010311: lateral root formation	2.26E-02
130	GO:0009407: toxin catabolic process	2.34E-02
131	GO:0080167: response to karrikin	2.35E-02
132	GO:0055114: oxidation-reduction process	2.40E-02
133	GO:0048527: lateral root development	2.42E-02
134	GO:0009867: jasmonic acid mediated signaling pathway	2.59E-02
135	GO:0016051: carbohydrate biosynthetic process	2.59E-02
136	GO:0006839: mitochondrial transport	2.84E-02
137	GO:0042546: cell wall biogenesis	3.19E-02
138	GO:0009644: response to high light intensity	3.28E-02
139	GO:0008643: carbohydrate transport	3.28E-02
140	GO:0032259: methylation	3.31E-02
141	GO:0009636: response to toxic substance	3.37E-02
142	GO:0009414: response to water deprivation	3.47E-02
143	GO:0031347: regulation of defense response	3.55E-02
144	GO:0071555: cell wall organization	3.57E-02
145	GO:0042538: hyperosmotic salinity response	3.65E-02
146	GO:0051603: proteolysis involved in cellular protein catabolic process	3.93E-02
147	GO:0006857: oligopeptide transport	4.02E-02
148	GO:0042545: cell wall modification	4.82E-02
149	GO:0009734: auxin-activated signaling pathway	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0010487: thermospermine synthase activity	0.00E+00
2	GO:0048307: ferredoxin-nitrite reductase activity	0.00E+00
3	GO:0050613: delta14-sterol reductase activity	0.00E+00
4	GO:0050421: nitrite reductase (NO-forming) activity	0.00E+00
5	GO:0047889: ferredoxin-nitrate reductase activity	0.00E+00
6	GO:0010328: auxin influx transmembrane transporter activity	1.63E-05
7	GO:0016413: O-acetyltransferase activity	1.40E-04
8	GO:0008568: microtubule-severing ATPase activity	1.42E-04
9	GO:0003838: sterol 24-C-methyltransferase activity	1.42E-04
10	GO:0016768: spermine synthase activity	1.42E-04
11	GO:0030797: 24-methylenesterol C-methyltransferase activity	1.42E-04
12	GO:0080132: fatty acid alpha-hydroxylase activity	1.42E-04
13	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.50E-04
14	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	3.25E-04
15	GO:0050017: L-3-cyanoalanine synthase activity	3.25E-04
16	GO:0004047: aminomethyltransferase activity	3.25E-04
17	GO:0004089: carbonate dehydratase activity	3.27E-04
18	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	4.63E-04
19	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	4.63E-04
20	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	4.63E-04
21	GO:0070330: aromatase activity	5.33E-04
22	GO:0030570: pectate lyase activity	7.35E-04
23	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	7.63E-04
24	GO:0003999: adenine phosphoribosyltransferase activity	7.63E-04
25	GO:0016149: translation release factor activity, codon specific	7.63E-04
26	GO:0003878: ATP citrate synthase activity	7.63E-04
27	GO:0004659: prenyltransferase activity	1.01E-03
28	GO:0018685: alkane 1-monooxygenase activity	1.28E-03
29	GO:0008725: DNA-3-methyladenine glycosylase activity	1.28E-03
30	GO:0009922: fatty acid elongase activity	1.28E-03
31	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.56E-03
32	GO:0004124: cysteine synthase activity	1.88E-03
33	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.88E-03
34	GO:0004564: beta-fructofuranosidase activity	2.56E-03
35	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	3.31E-03
36	GO:0003747: translation release factor activity	3.31E-03
37	GO:0004337: geranyltranstransferase activity	3.31E-03
38	GO:0004575: sucrose alpha-glucosidase activity	3.71E-03
39	GO:0008047: enzyme activator activity	4.12E-03
40	GO:0015293: symporter activity	4.13E-03
41	GO:0004161: dimethylallyltranstransferase activity	4.55E-03
42	GO:0008378: galactosyltransferase activity	4.99E-03
43	GO:0015171: amino acid transmembrane transporter activity	5.48E-03
44	GO:0004871: signal transducer activity	5.78E-03
45	GO:0031409: pigment binding	6.91E-03
46	GO:0003714: transcription corepressor activity	7.42E-03
47	GO:0004857: enzyme inhibitor activity	7.42E-03
48	GO:0019706: protein-cysteine S-palmitoyltransferase activity	8.49E-03
49	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	9.05E-03
50	GO:0016829: lyase activity	9.54E-03
51	GO:0008514: organic anion transmembrane transporter activity	1.02E-02
52	GO:0003824: catalytic activity	1.11E-02
53	GO:0016887: ATPase activity	1.24E-02
54	GO:0004791: thioredoxin-disulfide reductase activity	1.26E-02
55	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.39E-02
56	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.53E-02
57	GO:0051015: actin filament binding	1.53E-02
58	GO:0005200: structural constituent of cytoskeleton	1.67E-02
59	GO:0008483: transaminase activity	1.67E-02
60	GO:0015250: water channel activity	1.81E-02
61	GO:0046872: metal ion binding	1.81E-02
62	GO:0016168: chlorophyll binding	1.88E-02
63	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.03E-02
64	GO:0102483: scopolin beta-glucosidase activity	2.03E-02
65	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.09E-02
66	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.11E-02
67	GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding	2.11E-02
68	GO:0005516: calmodulin binding	2.47E-02
69	GO:0052689: carboxylic ester hydrolase activity	2.59E-02
70	GO:0000987: core promoter proximal region sequence-specific DNA binding	2.67E-02
71	GO:0008422: beta-glucosidase activity	2.76E-02
72	GO:0051539: 4 iron, 4 sulfur cluster binding	2.84E-02
73	GO:0004364: glutathione transferase activity	3.01E-02
74	GO:0004185: serine-type carboxypeptidase activity	3.10E-02
75	GO:0003924: GTPase activity	3.46E-02
76	GO:0005506: iron ion binding	3.50E-02
77	GO:0005215: transporter activity	4.04E-02
78	GO:0045330: aspartyl esterase activity	4.12E-02
79	GO:0004650: polygalacturonase activity	4.62E-02
80	GO:0030599: pectinesterase activity	4.72E-02
81	GO:0022857: transmembrane transporter activity	4.72E-02
82	GO:0003779: actin binding	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0009505: plant-type cell wall	5.65E-08
2	GO:0048046: apoplast	5.16E-05
3	GO:0046658: anchored component of plasma membrane	5.21E-05
4	GO:0009506: plasmodesma	1.15E-04
5	GO:0009782: photosystem I antenna complex	1.42E-04
6	GO:0016020: membrane	2.45E-04
7	GO:0005576: extracellular region	2.58E-04
8	GO:0005618: cell wall	2.87E-04
9	GO:0031225: anchored component of membrane	3.60E-04
10	GO:0005886: plasma membrane	5.01E-04
11	GO:0009346: citrate lyase complex	7.63E-04
12	GO:0005775: vacuolar lumen	7.63E-04
13	GO:0016021: integral component of membrane	9.80E-04
14	GO:0005773: vacuole	1.92E-03
15	GO:0000123: histone acetyltransferase complex	2.21E-03
16	GO:0045298: tubulin complex	3.31E-03
17	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.31E-03
18	GO:0000139: Golgi membrane	4.20E-03
19	GO:0005789: endoplasmic reticulum membrane	5.19E-03
20	GO:0005794: Golgi apparatus	5.89E-03
21	GO:0030659: cytoplasmic vesicle membrane	5.92E-03
22	GO:0030176: integral component of endoplasmic reticulum membrane	6.41E-03
23	GO:0030076: light-harvesting complex	6.41E-03
24	GO:0005875: microtubule associated complex	6.91E-03
25	GO:0009535: chloroplast thylakoid membrane	1.01E-02
26	GO:0009941: chloroplast envelope	1.28E-02
27	GO:0009570: chloroplast stroma	2.41E-02
28	GO:0000325: plant-type vacuole	2.42E-02
29	GO:0031902: late endosome membrane	2.93E-02