co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G53520

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070125: mitochondrial translational elongation	0.00E+00
2	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
3	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
4	GO:0007638: mechanosensory behavior	0.00E+00
5	GO:0010430: fatty acid omega-oxidation	0.00E+00
6	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
7	GO:0032544: plastid translation	6.03E-06
8	GO:0007267: cell-cell signaling	2.21E-05
9	GO:0009735: response to cytokinin	1.02E-04
10	GO:0010442: guard cell morphogenesis	2.32E-04
11	GO:0060627: regulation of vesicle-mediated transport	2.32E-04
12	GO:0010583: response to cyclopentenone	2.59E-04
13	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.79E-04
14	GO:0018119: peptidyl-cysteine S-nitrosylation	4.97E-04
15	GO:2000123: positive regulation of stomatal complex development	5.15E-04
16	GO:0010424: DNA methylation on cytosine within a CG sequence	5.15E-04
17	GO:0052541: plant-type cell wall cellulose metabolic process	5.15E-04
18	GO:0006695: cholesterol biosynthetic process	5.15E-04
19	GO:0010069: zygote asymmetric cytokinesis in embryo sac	5.15E-04
20	GO:0071555: cell wall organization	6.98E-04
21	GO:0010020: chloroplast fission	7.26E-04
22	GO:0006869: lipid transport	7.33E-04
23	GO:0006065: UDP-glucuronate biosynthetic process	8.37E-04
24	GO:0006424: glutamyl-tRNA aminoacylation	1.19E-03
25	GO:0043572: plastid fission	1.19E-03
26	GO:0007231: osmosensory signaling pathway	1.19E-03
27	GO:0006241: CTP biosynthetic process	1.19E-03
28	GO:0006165: nucleoside diphosphate phosphorylation	1.19E-03
29	GO:0006228: UTP biosynthetic process	1.19E-03
30	GO:0009294: DNA mediated transformation	1.42E-03
31	GO:0006412: translation	1.42E-03
32	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.42E-03
33	GO:0019722: calcium-mediated signaling	1.55E-03
34	GO:2000038: regulation of stomatal complex development	1.59E-03
35	GO:0006546: glycine catabolic process	1.59E-03
36	GO:0009956: radial pattern formation	1.59E-03
37	GO:0051322: anaphase	1.59E-03
38	GO:0009765: photosynthesis, light harvesting	1.59E-03
39	GO:0006085: acetyl-CoA biosynthetic process	1.59E-03
40	GO:0006183: GTP biosynthetic process	1.59E-03
41	GO:0000919: cell plate assembly	1.59E-03
42	GO:0033500: carbohydrate homeostasis	1.59E-03
43	GO:0009658: chloroplast organization	1.60E-03
44	GO:0042254: ribosome biogenesis	1.64E-03
45	GO:0042335: cuticle development	1.81E-03
46	GO:0000271: polysaccharide biosynthetic process	1.81E-03
47	GO:0016120: carotene biosynthetic process	2.03E-03
48	GO:0032543: mitochondrial translation	2.03E-03
49	GO:0016123: xanthophyll biosynthetic process	2.03E-03
50	GO:0010375: stomatal complex patterning	2.03E-03
51	GO:0048359: mucilage metabolic process involved in seed coat development	2.03E-03
52	GO:0010190: cytochrome b6f complex assembly	2.50E-03
53	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.50E-03
54	GO:0006796: phosphate-containing compound metabolic process	2.50E-03
55	GO:0009828: plant-type cell wall loosening	2.90E-03
56	GO:0045454: cell redox homeostasis	2.91E-03
57	GO:1901259: chloroplast rRNA processing	3.00E-03
58	GO:0006694: steroid biosynthetic process	3.00E-03
59	GO:0048280: vesicle fusion with Golgi apparatus	3.00E-03
60	GO:0048444: floral organ morphogenesis	3.00E-03
61	GO:0010555: response to mannitol	3.00E-03
62	GO:0009955: adaxial/abaxial pattern specification	3.00E-03
63	GO:0000910: cytokinesis	3.26E-03
64	GO:0010027: thylakoid membrane organization	3.46E-03
65	GO:0048528: post-embryonic root development	3.54E-03
66	GO:0071669: plant-type cell wall organization or biogenesis	3.54E-03
67	GO:0006875: cellular metal ion homeostasis	4.10E-03
68	GO:0009642: response to light intensity	4.10E-03
69	GO:0045490: pectin catabolic process	4.59E-03
70	GO:0006526: arginine biosynthetic process	4.70E-03
71	GO:0009808: lignin metabolic process	4.70E-03
72	GO:0009834: plant-type secondary cell wall biogenesis	4.97E-03
73	GO:0033384: geranyl diphosphate biosynthetic process	5.32E-03
74	GO:0048589: developmental growth	5.32E-03
75	GO:0015780: nucleotide-sugar transport	5.32E-03
76	GO:0045337: farnesyl diphosphate biosynthetic process	5.32E-03
77	GO:0046686: response to cadmium ion	5.89E-03
78	GO:0042761: very long-chain fatty acid biosynthetic process	5.97E-03
79	GO:0006349: regulation of gene expression by genetic imprinting	5.97E-03
80	GO:0006949: syncytium formation	6.65E-03
81	GO:0006896: Golgi to vacuole transport	6.65E-03
82	GO:0006415: translational termination	7.35E-03
83	GO:0010216: maintenance of DNA methylation	7.35E-03
84	GO:0010015: root morphogenesis	7.35E-03
85	GO:0006816: calcium ion transport	7.35E-03
86	GO:0009773: photosynthetic electron transport in photosystem I	7.35E-03
87	GO:0051707: response to other organism	7.36E-03
88	GO:0009826: unidimensional cell growth	7.63E-03
89	GO:0042546: cell wall biogenesis	7.65E-03
90	GO:0045037: protein import into chloroplast stroma	8.08E-03
91	GO:0042742: defense response to bacterium	8.43E-03
92	GO:0050826: response to freezing	8.84E-03
93	GO:0009664: plant-type cell wall organization	9.24E-03
94	GO:0009934: regulation of meristem structural organization	9.62E-03
95	GO:0010207: photosystem II assembly	9.62E-03
96	GO:0009933: meristem structural organization	9.62E-03
97	GO:0051603: proteolysis involved in cellular protein catabolic process	1.03E-02
98	GO:0070588: calcium ion transmembrane transport	1.04E-02
99	GO:0010025: wax biosynthetic process	1.13E-02
100	GO:0006071: glycerol metabolic process	1.13E-02
101	GO:0007010: cytoskeleton organization	1.21E-02
102	GO:0048367: shoot system development	1.21E-02
103	GO:0019344: cysteine biosynthetic process	1.21E-02
104	GO:0000027: ribosomal large subunit assembly	1.21E-02
105	GO:0007017: microtubule-based process	1.30E-02
106	GO:0051302: regulation of cell division	1.30E-02
107	GO:0006418: tRNA aminoacylation for protein translation	1.30E-02
108	GO:0010026: trichome differentiation	1.30E-02
109	GO:0048278: vesicle docking	1.39E-02
110	GO:0080092: regulation of pollen tube growth	1.48E-02
111	GO:0030245: cellulose catabolic process	1.48E-02
112	GO:0009411: response to UV	1.57E-02
113	GO:0016117: carotenoid biosynthetic process	1.77E-02
114	GO:0042147: retrograde transport, endosome to Golgi	1.77E-02
115	GO:0000413: protein peptidyl-prolyl isomerization	1.87E-02
116	GO:0000226: microtubule cytoskeleton organization	1.87E-02
117	GO:0010305: leaf vascular tissue pattern formation	1.97E-02
118	GO:0045489: pectin biosynthetic process	1.97E-02
119	GO:0006520: cellular amino acid metabolic process	1.97E-02
120	GO:0061025: membrane fusion	2.07E-02
121	GO:0055114: oxidation-reduction process	2.08E-02
122	GO:0006623: protein targeting to vacuole	2.18E-02
123	GO:0006633: fatty acid biosynthetic process	2.23E-02
124	GO:0006891: intra-Golgi vesicle-mediated transport	2.29E-02
125	GO:0016132: brassinosteroid biosynthetic process	2.29E-02
126	GO:0071554: cell wall organization or biogenesis	2.29E-02
127	GO:0007264: small GTPase mediated signal transduction	2.40E-02
128	GO:0006906: vesicle fusion	3.22E-02
129	GO:0010411: xyloglucan metabolic process	3.34E-02
130	GO:0006888: ER to Golgi vesicle-mediated transport	3.34E-02
131	GO:0015995: chlorophyll biosynthetic process	3.34E-02
132	GO:0016311: dephosphorylation	3.47E-02
133	GO:0030244: cellulose biosynthetic process	3.59E-02
134	GO:0009817: defense response to fungus, incompatible interaction	3.59E-02
135	GO:0048481: plant ovule development	3.59E-02
136	GO:0009832: plant-type cell wall biogenesis	3.72E-02
137	GO:0048767: root hair elongation	3.72E-02
138	GO:0007568: aging	3.98E-02
139	GO:0009910: negative regulation of flower development	3.98E-02
140	GO:0016051: carbohydrate biosynthetic process	4.25E-02
141	GO:0009409: response to cold	4.27E-02
142	GO:0006839: mitochondrial transport	4.67E-02
143	GO:0006887: exocytosis	4.81E-02
144	GO:0006631: fatty acid metabolic process	4.81E-02
145	GO:0042542: response to hydrogen peroxide	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
2	GO:0050614: delta24-sterol reductase activity	0.00E+00
3	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
4	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
5	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
6	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
7	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
8	GO:0051920: peroxiredoxin activity	9.98E-09
9	GO:0016209: antioxidant activity	3.56E-08
10	GO:0019843: rRNA binding	2.74E-07
11	GO:0051753: mannan synthase activity	1.23E-04
12	GO:0009374: biotin binding	2.32E-04
13	GO:0015088: copper uptake transmembrane transporter activity	2.32E-04
14	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	2.32E-04
15	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	2.32E-04
16	GO:0004560: alpha-L-fucosidase activity	2.32E-04
17	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.32E-04
18	GO:0003735: structural constituent of ribosome	3.06E-04
19	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	5.15E-04
20	GO:0004047: aminomethyltransferase activity	5.15E-04
21	GO:0046593: mandelonitrile lyase activity	5.15E-04
22	GO:0030267: glyoxylate reductase (NADP) activity	8.37E-04
23	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	8.37E-04
24	GO:0003979: UDP-glucose 6-dehydrogenase activity	8.37E-04
25	GO:0070330: aromatase activity	8.37E-04
26	GO:0002161: aminoacyl-tRNA editing activity	8.37E-04
27	GO:0003924: GTPase activity	8.99E-04
28	GO:0016149: translation release factor activity, codon specific	1.19E-03
29	GO:0004550: nucleoside diphosphate kinase activity	1.19E-03
30	GO:0003878: ATP citrate synthase activity	1.19E-03
31	GO:0030570: pectate lyase activity	1.42E-03
32	GO:0004045: aminoacyl-tRNA hydrolase activity	1.59E-03
33	GO:0046527: glucosyltransferase activity	1.59E-03
34	GO:0004601: peroxidase activity	1.60E-03
35	GO:0008289: lipid binding	1.60E-03
36	GO:0018685: alkane 1-monooxygenase activity	2.03E-03
37	GO:0003989: acetyl-CoA carboxylase activity	2.03E-03
38	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.03E-03
39	GO:0016462: pyrophosphatase activity	2.50E-03
40	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.00E-03
41	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	3.00E-03
42	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	3.00E-03
43	GO:0016832: aldehyde-lyase activity	3.00E-03
44	GO:0005200: structural constituent of cytoskeleton	3.08E-03
45	GO:0004427: inorganic diphosphatase activity	3.54E-03
46	GO:0052747: sinapyl alcohol dehydrogenase activity	4.10E-03
47	GO:0030145: manganese ion binding	5.21E-03
48	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	5.21E-03
49	GO:0004672: protein kinase activity	5.24E-03
50	GO:0003747: translation release factor activity	5.32E-03
51	GO:0004337: geranyltranstransferase activity	5.32E-03
52	GO:0008889: glycerophosphodiester phosphodiesterase activity	5.32E-03
53	GO:0003746: translation elongation factor activity	5.71E-03
54	GO:0005525: GTP binding	5.87E-03
55	GO:0005381: iron ion transmembrane transporter activity	5.97E-03
56	GO:0000149: SNARE binding	6.23E-03
57	GO:0005089: Rho guanyl-nucleotide exchange factor activity	7.35E-03
58	GO:0004161: dimethylallyltranstransferase activity	7.35E-03
59	GO:0005484: SNAP receptor activity	7.36E-03
60	GO:0004185: serine-type carboxypeptidase activity	7.36E-03
61	GO:0000049: tRNA binding	8.08E-03
62	GO:0045551: cinnamyl-alcohol dehydrogenase activity	8.08E-03
63	GO:0005262: calcium channel activity	8.84E-03
64	GO:0004565: beta-galactosidase activity	8.84E-03
65	GO:0051287: NAD binding	8.91E-03
66	GO:0045735: nutrient reservoir activity	1.18E-02
67	GO:0052689: carboxylic ester hydrolase activity	1.20E-02
68	GO:0004857: enzyme inhibitor activity	1.21E-02
69	GO:0008324: cation transmembrane transporter activity	1.30E-02
70	GO:0030599: pectinesterase activity	1.33E-02
71	GO:0004176: ATP-dependent peptidase activity	1.39E-02
72	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.48E-02
73	GO:0016760: cellulose synthase (UDP-forming) activity	1.57E-02
74	GO:0008810: cellulase activity	1.57E-02
75	GO:0008514: organic anion transmembrane transporter activity	1.67E-02
76	GO:0004812: aminoacyl-tRNA ligase activity	1.77E-02
77	GO:0005516: calmodulin binding	1.77E-02
78	GO:0019901: protein kinase binding	2.18E-02
79	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.29E-02
80	GO:0008237: metallopeptidase activity	2.74E-02
81	GO:0008483: transaminase activity	2.74E-02
82	GO:0016722: oxidoreductase activity, oxidizing metal ions	2.74E-02
83	GO:0016413: O-acetyltransferase activity	2.86E-02
84	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.34E-02
85	GO:0000287: magnesium ion binding	3.72E-02
86	GO:0004222: metalloendopeptidase activity	3.85E-02
87	GO:0016788: hydrolase activity, acting on ester bonds	3.86E-02
88	GO:0050660: flavin adenine dinucleotide binding	4.38E-02
89	GO:0003993: acid phosphatase activity	4.39E-02
90	GO:0016740: transferase activity	4.52E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0009570: chloroplast stroma	3.45E-18
3	GO:0009941: chloroplast envelope	8.19E-12
4	GO:0031225: anchored component of membrane	1.08E-10
5	GO:0009507: chloroplast	2.41E-10
6	GO:0048046: apoplast	5.85E-10
7	GO:0009505: plant-type cell wall	2.45E-09
8	GO:0046658: anchored component of plasma membrane	7.38E-09
9	GO:0009579: thylakoid	5.03E-07
10	GO:0005576: extracellular region	3.46E-06
11	GO:0005618: cell wall	1.33E-05
12	GO:0009534: chloroplast thylakoid	3.74E-05
13	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.32E-04
14	GO:0009536: plastid	3.06E-04
15	GO:0009535: chloroplast thylakoid membrane	4.24E-04
16	GO:0000311: plastid large ribosomal subunit	5.68E-04
17	GO:0009506: plasmodesma	6.23E-04
18	GO:0005886: plasma membrane	6.85E-04
19	GO:0005840: ribosome	7.74E-04
20	GO:0009317: acetyl-CoA carboxylase complex	8.37E-04
21	GO:0005853: eukaryotic translation elongation factor 1 complex	8.37E-04
22	GO:0031977: thylakoid lumen	9.15E-04
23	GO:0009346: citrate lyase complex	1.19E-03
24	GO:0016020: membrane	1.29E-03
25	GO:0031897: Tic complex	1.59E-03
26	GO:0072686: mitotic spindle	2.03E-03
27	GO:0009504: cell plate	2.24E-03
28	GO:0009706: chloroplast inner membrane	2.29E-03
29	GO:0010168: ER body	2.50E-03
30	GO:0000793: condensed chromosome	2.50E-03
31	GO:0009543: chloroplast thylakoid lumen	3.05E-03
32	GO:0010319: stromule	3.08E-03
33	GO:0000794: condensed nuclear chromosome	3.54E-03
34	GO:0009533: chloroplast stromal thylakoid	3.54E-03
35	GO:0012507: ER to Golgi transport vesicle membrane	4.10E-03
36	GO:0009539: photosystem II reaction center	4.70E-03
37	GO:0045298: tubulin complex	5.32E-03
38	GO:0000922: spindle pole	5.32E-03
39	GO:0005763: mitochondrial small ribosomal subunit	5.32E-03
40	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.32E-03
41	GO:0055028: cortical microtubule	6.65E-03
42	GO:0016324: apical plasma membrane	6.65E-03
43	GO:0031201: SNARE complex	6.78E-03
44	GO:0009574: preprophase band	8.84E-03
45	GO:0031012: extracellular matrix	8.84E-03
46	GO:0022626: cytosolic ribosome	8.96E-03
47	GO:0005874: microtubule	1.01E-02
48	GO:0005875: microtubule associated complex	1.13E-02
49	GO:0042651: thylakoid membrane	1.30E-02
50	GO:0009654: photosystem II oxygen evolving complex	1.30E-02
51	GO:0009532: plastid stroma	1.39E-02
52	GO:0000139: Golgi membrane	1.42E-02
53	GO:0005794: Golgi apparatus	1.83E-02
54	GO:0009524: phragmoplast	1.87E-02
55	GO:0005802: trans-Golgi network	1.95E-02
56	GO:0005768: endosome	2.36E-02
57	GO:0005773: vacuole	2.53E-02
58	GO:0000325: plant-type vacuole	3.98E-02
59	GO:0005819: spindle	4.53E-02
60	GO:0031969: chloroplast membrane	4.69E-02
61	GO:0031902: late endosome membrane	4.81E-02
62	GO:0022625: cytosolic large ribosomal subunit	4.93E-02