Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G53310

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042430: indole-containing compound metabolic process0.00E+00
2GO:0042362: fat-soluble vitamin biosynthetic process0.00E+00
3GO:0006793: phosphorus metabolic process0.00E+00
4GO:0006099: tricarboxylic acid cycle1.64E-07
5GO:0016036: cellular response to phosphate starvation5.77E-06
6GO:0006097: glyoxylate cycle1.32E-05
7GO:0009651: response to salt stress2.54E-05
8GO:0030643: cellular phosphate ion homeostasis2.87E-05
9GO:0080167: response to karrikin3.31E-05
10GO:0019375: galactolipid biosynthetic process5.09E-05
11GO:0006102: isocitrate metabolic process5.09E-05
12GO:0010421: hydrogen peroxide-mediated programmed cell death9.33E-05
13GO:0003400: regulation of COPII vesicle coating9.33E-05
14GO:0006560: proline metabolic process9.33E-05
15GO:1900424: regulation of defense response to bacterium9.33E-05
16GO:0010266: response to vitamin B19.33E-05
17GO:0080093: regulation of photorespiration9.33E-05
18GO:0031998: regulation of fatty acid beta-oxidation9.33E-05
19GO:0060627: regulation of vesicle-mediated transport9.33E-05
20GO:0015760: glucose-6-phosphate transport9.33E-05
21GO:1990641: response to iron ion starvation9.33E-05
22GO:0080173: male-female gamete recognition during double fertilization9.33E-05
23GO:0072593: reactive oxygen species metabolic process1.37E-04
24GO:0015706: nitrate transport1.59E-04
25GO:0006631: fatty acid metabolic process1.78E-04
26GO:0019374: galactolipid metabolic process2.20E-04
27GO:0006101: citrate metabolic process2.20E-04
28GO:0031349: positive regulation of defense response2.20E-04
29GO:0046475: glycerophospholipid catabolic process2.20E-04
30GO:0015712: hexose phosphate transport2.20E-04
31GO:1902000: homogentisate catabolic process2.20E-04
32GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine2.20E-04
33GO:0051592: response to calcium ion2.20E-04
34GO:0031648: protein destabilization2.20E-04
35GO:0010133: proline catabolic process to glutamate2.20E-04
36GO:0010618: aerenchyma formation2.20E-04
37GO:0051262: protein tetramerization2.20E-04
38GO:0019521: D-gluconate metabolic process2.20E-04
39GO:0009915: phloem sucrose loading2.20E-04
40GO:0034976: response to endoplasmic reticulum stress2.63E-04
41GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway3.67E-04
42GO:0016045: detection of bacterium3.67E-04
43GO:1900140: regulation of seedling development3.67E-04
44GO:0080055: low-affinity nitrate transport3.67E-04
45GO:0035436: triose phosphate transmembrane transport3.67E-04
46GO:0071836: nectar secretion3.67E-04
47GO:0010351: lithium ion transport3.67E-04
48GO:0009072: aromatic amino acid family metabolic process3.67E-04
49GO:0015714: phosphoenolpyruvate transport3.67E-04
50GO:0006817: phosphate ion transport4.62E-04
51GO:0006882: cellular zinc ion homeostasis5.28E-04
52GO:0001676: long-chain fatty acid metabolic process5.28E-04
53GO:0048194: Golgi vesicle budding5.28E-04
54GO:0009749: response to glucose6.66E-04
55GO:0015713: phosphoglycerate transport7.02E-04
56GO:0010109: regulation of photosynthesis7.02E-04
57GO:0060548: negative regulation of cell death7.02E-04
58GO:0045727: positive regulation of translation7.02E-04
59GO:1902584: positive regulation of response to water deprivation7.02E-04
60GO:0000304: response to singlet oxygen8.88E-04
61GO:0045927: positive regulation of growth8.88E-04
62GO:0009229: thiamine diphosphate biosynthetic process8.88E-04
63GO:0010225: response to UV-C8.88E-04
64GO:0009247: glycolipid biosynthetic process8.88E-04
65GO:0006979: response to oxidative stress9.16E-04
66GO:0009228: thiamine biosynthetic process1.08E-03
67GO:0009643: photosynthetic acclimation1.08E-03
68GO:0010942: positive regulation of cell death1.08E-03
69GO:0006121: mitochondrial electron transport, succinate to ubiquinone1.08E-03
70GO:0009627: systemic acquired resistance1.12E-03
71GO:0042128: nitrate assimilation1.12E-03
72GO:0009617: response to bacterium1.16E-03
73GO:0016311: dephosphorylation1.24E-03
74GO:0034389: lipid particle organization1.29E-03
75GO:0010189: vitamin E biosynthetic process1.29E-03
76GO:0010555: response to mannitol1.29E-03
77GO:0010310: regulation of hydrogen peroxide metabolic process1.29E-03
78GO:2000067: regulation of root morphogenesis1.29E-03
79GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response1.29E-03
80GO:0006499: N-terminal protein myristoylation1.43E-03
81GO:0009407: toxin catabolic process1.43E-03
82GO:0010043: response to zinc ion1.50E-03
83GO:0030026: cellular manganese ion homeostasis1.51E-03
84GO:0009395: phospholipid catabolic process1.51E-03
85GO:0043090: amino acid import1.51E-03
86GO:0080186: developmental vegetative growth1.51E-03
87GO:0009787: regulation of abscisic acid-activated signaling pathway1.75E-03
88GO:0046686: response to cadmium ion1.95E-03
89GO:0055085: transmembrane transport1.99E-03
90GO:0007186: G-protein coupled receptor signaling pathway2.00E-03
91GO:0010262: somatic embryogenesis2.00E-03
92GO:0010208: pollen wall assembly2.00E-03
93GO:0042542: response to hydrogen peroxide2.02E-03
94GO:0009744: response to sucrose2.10E-03
95GO:0006098: pentose-phosphate shunt2.25E-03
96GO:0046685: response to arsenic-containing substance2.25E-03
97GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway2.52E-03
98GO:0010205: photoinhibition2.52E-03
99GO:0043067: regulation of programmed cell death2.52E-03
100GO:0007064: mitotic sister chromatid cohesion2.80E-03
101GO:0006995: cellular response to nitrogen starvation2.80E-03
102GO:0006032: chitin catabolic process2.80E-03
103GO:0055062: phosphate ion homeostasis2.80E-03
104GO:0009073: aromatic amino acid family biosynthetic process3.09E-03
105GO:0000272: polysaccharide catabolic process3.09E-03
106GO:0009750: response to fructose3.09E-03
107GO:0006816: calcium ion transport3.09E-03
108GO:0006790: sulfur compound metabolic process3.38E-03
109GO:0012501: programmed cell death3.38E-03
110GO:0006820: anion transport3.38E-03
111GO:0009626: plant-type hypersensitive response3.54E-03
112GO:0006807: nitrogen compound metabolic process3.69E-03
113GO:0006108: malate metabolic process3.69E-03
114GO:0005986: sucrose biosynthetic process3.69E-03
115GO:0009624: response to nematode3.99E-03
116GO:0009266: response to temperature stimulus4.01E-03
117GO:0010167: response to nitrate4.33E-03
118GO:0070588: calcium ion transmembrane transport4.33E-03
119GO:0046854: phosphatidylinositol phosphorylation4.33E-03
120GO:0042343: indole glucosinolate metabolic process4.33E-03
121GO:0006636: unsaturated fatty acid biosynthetic process4.67E-03
122GO:0006071: glycerol metabolic process4.67E-03
123GO:0006874: cellular calcium ion homeostasis5.36E-03
124GO:0009695: jasmonic acid biosynthetic process5.36E-03
125GO:0031408: oxylipin biosynthetic process5.72E-03
126GO:0006952: defense response5.72E-03
127GO:0016998: cell wall macromolecule catabolic process5.72E-03
128GO:0098542: defense response to other organism5.72E-03
129GO:0031348: negative regulation of defense response6.09E-03
130GO:0009735: response to cytokinin6.36E-03
131GO:0009409: response to cold6.40E-03
132GO:0006012: galactose metabolic process6.47E-03
133GO:0040008: regulation of growth6.56E-03
134GO:0009306: protein secretion6.85E-03
135GO:0010150: leaf senescence6.88E-03
136GO:0006814: sodium ion transport8.47E-03
137GO:0010183: pollen tube guidance8.90E-03
138GO:0010193: response to ozone9.33E-03
139GO:0030163: protein catabolic process1.02E-02
140GO:0001666: response to hypoxia1.21E-02
141GO:0009737: response to abscisic acid1.27E-02
142GO:0006888: ER to Golgi vesicle-mediated transport1.36E-02
143GO:0044550: secondary metabolite biosynthetic process1.44E-02
144GO:0008219: cell death1.46E-02
145GO:0006811: ion transport1.56E-02
146GO:0045454: cell redox homeostasis1.59E-02
147GO:0006865: amino acid transport1.67E-02
148GO:0009853: photorespiration1.73E-02
149GO:0006839: mitochondrial transport1.89E-02
150GO:0006629: lipid metabolic process1.96E-02
151GO:0009408: response to heat1.96E-02
152GO:0009644: response to high light intensity2.18E-02
153GO:0009636: response to toxic substance2.24E-02
154GO:0031347: regulation of defense response2.37E-02
155GO:0006812: cation transport2.43E-02
156GO:0009846: pollen germination2.43E-02
157GO:0006486: protein glycosylation2.55E-02
158GO:0006857: oligopeptide transport2.68E-02
159GO:0006096: glycolytic process2.88E-02
160GO:0048316: seed development2.94E-02
161GO:0009742: brassinosteroid mediated signaling pathway3.42E-02
162GO:0009416: response to light stimulus3.47E-02
163GO:0009611: response to wounding3.55E-02
164GO:0009058: biosynthetic process4.00E-02
165GO:0042744: hydrogen peroxide catabolic process4.22E-02
166GO:0009790: embryo development4.30E-02
167GO:0006457: protein folding4.48E-02
168GO:0006633: fatty acid biosynthetic process4.53E-02
169GO:0006511: ubiquitin-dependent protein catabolic process4.69E-02
RankGO TermAdjusted P value
1GO:0003842: 1-pyrroline-5-carboxylate dehydrogenase activity0.00E+00
2GO:0016312: inositol bisphosphate phosphatase activity0.00E+00
3GO:0010176: homogentisate phytyltransferase activity0.00E+00
4GO:0016034: maleylacetoacetate isomerase activity0.00E+00
5GO:0102391: decanoate--CoA ligase activity2.87E-05
6GO:0004467: long-chain fatty acid-CoA ligase activity3.89E-05
7GO:0005090: Sar guanyl-nucleotide exchange factor activity9.33E-05
8GO:0004321: fatty-acyl-CoA synthase activity9.33E-05
9GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity9.33E-05
10GO:0005388: calcium-transporting ATPase activity1.83E-04
11GO:0005315: inorganic phosphate transmembrane transporter activity1.83E-04
12GO:0000287: magnesium ion binding2.19E-04
13GO:0003849: 3-deoxy-7-phosphoheptulonate synthase activity2.20E-04
14GO:0004338: glucan exo-1,3-beta-glucosidase activity2.20E-04
15GO:0048531: beta-1,3-galactosyltransferase activity2.20E-04
16GO:0004450: isocitrate dehydrogenase (NADP+) activity2.20E-04
17GO:0004634: phosphopyruvate hydratase activity2.20E-04
18GO:0080041: ADP-ribose pyrophosphohydrolase activity2.20E-04
19GO:0003994: aconitate hydratase activity2.20E-04
20GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity2.20E-04
21GO:0015152: glucose-6-phosphate transmembrane transporter activity2.20E-04
22GO:0015293: symporter activity2.34E-04
23GO:0004298: threonine-type endopeptidase activity3.56E-04
24GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity3.67E-04
25GO:0031683: G-protein beta/gamma-subunit complex binding3.67E-04
26GO:0071917: triose-phosphate transmembrane transporter activity3.67E-04
27GO:0001664: G-protein coupled receptor binding3.67E-04
28GO:0080054: low-affinity nitrate transmembrane transporter activity3.67E-04
29GO:0046524: sucrose-phosphate synthase activity3.67E-04
30GO:0003756: protein disulfide isomerase activity4.62E-04
31GO:0004108: citrate (Si)-synthase activity5.28E-04
32GO:0015120: phosphoglycerate transmembrane transporter activity7.02E-04
33GO:0004659: prenyltransferase activity7.02E-04
34GO:0015368: calcium:cation antiporter activity7.02E-04
35GO:0015369: calcium:proton antiporter activity7.02E-04
36GO:0005524: ATP binding7.09E-04
37GO:0016791: phosphatase activity8.55E-04
38GO:0000104: succinate dehydrogenase activity8.88E-04
39GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity1.08E-03
40GO:0016462: pyrophosphatase activity1.08E-03
41GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity1.08E-03
42GO:0016615: malate dehydrogenase activity1.08E-03
43GO:0004806: triglyceride lipase activity1.18E-03
44GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity1.29E-03
45GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity1.29E-03
46GO:0004012: phospholipid-translocating ATPase activity1.29E-03
47GO:0030060: L-malate dehydrogenase activity1.29E-03
48GO:0003978: UDP-glucose 4-epimerase activity1.29E-03
49GO:0004723: calcium-dependent protein serine/threonine phosphatase activity1.29E-03
50GO:0016157: sucrose synthase activity1.29E-03
51GO:0051020: GTPase binding1.29E-03
52GO:0004427: inorganic diphosphatase activity1.51E-03
53GO:0004601: peroxidase activity1.61E-03
54GO:0003993: acid phosphatase activity1.71E-03
55GO:0015491: cation:cation antiporter activity1.75E-03
56GO:0004714: transmembrane receptor protein tyrosine kinase activity1.75E-03
57GO:0015288: porin activity1.75E-03
58GO:0051539: 4 iron, 4 sulfur cluster binding1.86E-03
59GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity2.00E-03
60GO:0004630: phospholipase D activity2.00E-03
61GO:0008308: voltage-gated anion channel activity2.00E-03
62GO:0004364: glutathione transferase activity2.02E-03
63GO:0008889: glycerophosphodiester phosphodiesterase activity2.25E-03
64GO:0016207: 4-coumarate-CoA ligase activity2.25E-03
65GO:0015112: nitrate transmembrane transporter activity2.52E-03
66GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity2.52E-03
67GO:0004568: chitinase activity2.80E-03
68GO:0046872: metal ion binding3.39E-03
69GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism3.69E-03
70GO:0004022: alcohol dehydrogenase (NAD) activity3.69E-03
71GO:0005262: calcium channel activity3.69E-03
72GO:0015114: phosphate ion transmembrane transporter activity3.69E-03
73GO:0042973: glucan endo-1,3-beta-D-glucosidase activity4.01E-03
74GO:0008061: chitin binding4.33E-03
75GO:0003712: transcription cofactor activity4.33E-03
76GO:0004190: aspartic-type endopeptidase activity4.33E-03
77GO:0004725: protein tyrosine phosphatase activity4.67E-03
78GO:0005215: transporter activity4.71E-03
79GO:0051536: iron-sulfur cluster binding5.01E-03
80GO:0033612: receptor serine/threonine kinase binding5.72E-03
81GO:0008810: cellulase activity6.47E-03
82GO:0022891: substrate-specific transmembrane transporter activity6.47E-03
83GO:0050662: coenzyme binding8.47E-03
84GO:0004197: cysteine-type endopeptidase activity9.78E-03
85GO:0005507: copper ion binding1.12E-02
86GO:0005516: calmodulin binding1.20E-02
87GO:0008233: peptidase activity1.30E-02
88GO:0004721: phosphoprotein phosphatase activity1.36E-02
89GO:0030247: polysaccharide binding1.36E-02
90GO:0005096: GTPase activator activity1.51E-02
91GO:0050897: cobalt ion binding1.62E-02
92GO:0004871: signal transducer activity1.66E-02
93GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen1.71E-02
94GO:0004722: protein serine/threonine phosphatase activity1.74E-02
95GO:0005515: protein binding1.92E-02
96GO:0035091: phosphatidylinositol binding2.18E-02
97GO:0051287: NAD binding2.37E-02
98GO:0016298: lipase activity2.62E-02
99GO:0015171: amino acid transmembrane transporter activity2.75E-02
100GO:0004672: protein kinase activity2.83E-02
101GO:0016887: ATPase activity3.03E-02
102GO:0020037: heme binding3.09E-02
103GO:0016874: ligase activity3.15E-02
104GO:0016746: transferase activity, transferring acyl groups3.35E-02
105GO:0016829: lyase activity4.07E-02
106GO:0030170: pyridoxal phosphate binding4.15E-02
107GO:0004674: protein serine/threonine kinase activity4.37E-02
108GO:0015144: carbohydrate transmembrane transporter activity4.38E-02
109GO:0016787: hydrolase activity4.50E-02
110GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.61E-02
111GO:0015297: antiporter activity4.69E-02
112GO:0005351: sugar:proton symporter activity4.76E-02
113GO:0019825: oxygen binding4.92E-02
RankGO TermAdjusted P value
1GO:0019822: P4 peroxisome0.00E+00
2GO:0000327: lytic vacuole within protein storage vacuole0.00E+00
3GO:0005783: endoplasmic reticulum1.86E-06
4GO:0005886: plasma membrane4.15E-05
5GO:0005777: peroxisome4.60E-05
6GO:0019773: proteasome core complex, alpha-subunit complex6.46E-05
7GO:0045252: oxoglutarate dehydrogenase complex9.33E-05
8GO:0000015: phosphopyruvate hydratase complex2.20E-04
9GO:0005741: mitochondrial outer membrane3.56E-04
10GO:0005839: proteasome core complex3.56E-04
11GO:0005773: vacuole4.73E-04
12GO:0005788: endoplasmic reticulum lumen1.07E-03
13GO:0009507: chloroplast1.48E-03
14GO:0009986: cell surface1.51E-03
15GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)1.75E-03
16GO:0005811: lipid particle2.00E-03
17GO:0000326: protein storage vacuole2.00E-03
18GO:0046930: pore complex2.00E-03
19GO:0005774: vacuolar membrane2.26E-03
20GO:0048046: apoplast2.49E-03
21GO:0005829: cytosol2.57E-03
22GO:0005740: mitochondrial envelope2.80E-03
23GO:0000502: proteasome complex2.82E-03
24GO:0005618: cell wall2.96E-03
25GO:0005794: Golgi apparatus3.21E-03
26GO:0030176: integral component of endoplasmic reticulum membrane4.33E-03
27GO:0016020: membrane4.37E-03
28GO:0045271: respiratory chain complex I5.36E-03
29GO:0009536: plastid5.52E-03
30GO:0005759: mitochondrial matrix6.26E-03
31GO:0022626: cytosolic ribosome6.74E-03
32GO:0031969: chloroplast membrane1.32E-02
33GO:0009707: chloroplast outer membrane1.46E-02
34GO:0005819: spindle1.84E-02
35GO:0090406: pollen tube2.07E-02
36GO:0009505: plant-type cell wall2.32E-02
37GO:0031966: mitochondrial membrane2.43E-02
38GO:0005887: integral component of plasma membrane2.66E-02
39GO:0005635: nuclear envelope2.68E-02
40GO:0005747: mitochondrial respiratory chain complex I2.94E-02
41GO:0005834: heterotrimeric G-protein complex3.01E-02
42GO:0009506: plasmodesma3.02E-02
43GO:0009706: chloroplast inner membrane3.28E-02
44GO:0005623: cell3.93E-02
45GO:0009524: phragmoplast4.00E-02
46GO:0009705: plant-type vacuole membrane4.84E-02
Gene type



Gene DE type