co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G53090

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
2	GO:0015843: methylammonium transport	0.00E+00
3	GO:0009854: oxidative photosynthetic carbon pathway	5.39E-07
4	GO:0006636: unsaturated fatty acid biosynthetic process	7.42E-06
5	GO:0016119: carotene metabolic process	8.12E-06
6	GO:0043100: pyrimidine nucleobase salvage	2.19E-05
7	GO:0055114: oxidation-reduction process	3.66E-05
8	GO:0042823: pyridoxal phosphate biosynthetic process	6.14E-05
9	GO:0015696: ammonium transport	6.14E-05
10	GO:0072488: ammonium transmembrane transport	8.58E-05
11	GO:0006546: glycine catabolic process	8.58E-05
12	GO:0019464: glycine decarboxylation via glycine cleavage system	8.58E-05
13	GO:0043097: pyrimidine nucleoside salvage	1.12E-04
14	GO:0010236: plastoquinone biosynthetic process	1.12E-04
15	GO:0016123: xanthophyll biosynthetic process	1.12E-04
16	GO:0045962: positive regulation of development, heterochronic	1.41E-04
17	GO:0006206: pyrimidine nucleobase metabolic process	1.41E-04
18	GO:0050665: hydrogen peroxide biosynthetic process	1.41E-04
19	GO:0008610: lipid biosynthetic process	2.37E-04
20	GO:2000031: regulation of salicylic acid mediated signaling pathway	2.71E-04
21	GO:0071482: cellular response to light stimulus	2.71E-04
22	GO:0006098: pentose-phosphate shunt	3.07E-04
23	GO:0042742: defense response to bacterium	3.45E-04
24	GO:0043085: positive regulation of catalytic activity	4.19E-04
25	GO:0018119: peptidyl-cysteine S-nitrosylation	4.19E-04
26	GO:0002213: defense response to insect	4.58E-04
27	GO:0006094: gluconeogenesis	4.98E-04
28	GO:0019253: reductive pentose-phosphate cycle	5.39E-04
29	GO:0008299: isoprenoid biosynthetic process	7.09E-04
30	GO:0009695: jasmonic acid biosynthetic process	7.09E-04
31	GO:2000022: regulation of jasmonic acid mediated signaling pathway	7.99E-04
32	GO:0030433: ubiquitin-dependent ERAD pathway	7.99E-04
33	GO:0042631: cellular response to water deprivation	9.85E-04
34	GO:0006662: glycerol ether metabolic process	1.03E-03
35	GO:0051607: defense response to virus	1.45E-03
36	GO:0009853: photorespiration	2.10E-03
37	GO:0034599: cellular response to oxidative stress	2.16E-03
38	GO:0006631: fatty acid metabolic process	2.36E-03
39	GO:0000209: protein polyubiquitination	2.56E-03
40	GO:0009965: leaf morphogenesis	2.69E-03
41	GO:0006096: glycolytic process	3.40E-03
42	GO:0009624: response to nematode	3.86E-03
43	GO:0009058: biosynthetic process	4.67E-03
44	GO:0046686: response to cadmium ion	5.01E-03
45	GO:0006633: fatty acid biosynthetic process	5.26E-03
46	GO:0009658: chloroplast organization	7.59E-03
47	GO:0009723: response to ethylene	8.41E-03
48	GO:0048366: leaf development	8.51E-03
49	GO:0080167: response to karrikin	8.82E-03
50	GO:0010200: response to chitin	9.03E-03
51	GO:0015979: photosynthesis	9.68E-03
52	GO:0045454: cell redox homeostasis	1.00E-02
53	GO:0009735: response to cytokinin	1.63E-02
54	GO:0045893: positive regulation of transcription, DNA-templated	1.92E-02
55	GO:0055085: transmembrane transport	2.06E-02
56	GO:0030154: cell differentiation	3.06E-02
57	GO:0009409: response to cold	3.58E-02
58	GO:0006810: transport	3.79E-02

Rank	GO Term	Adjusted P value
1	GO:0015205: nucleobase transmembrane transporter activity	0.00E+00
2	GO:0008974: phosphoribulokinase activity	0.00E+00
3	GO:0008465: glycerate dehydrogenase activity	0.00E+00
4	GO:0004768: stearoyl-CoA 9-desaturase activity	0.00E+00
5	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
6	GO:0050347: trans-octaprenyltranstransferase activity	2.19E-05
7	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	2.19E-05
8	GO:0010291: carotene beta-ring hydroxylase activity	2.19E-05
9	GO:0004375: glycine dehydrogenase (decarboxylating) activity	6.14E-05
10	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	6.14E-05
11	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	6.14E-05
12	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	6.14E-05
13	GO:0008891: glycolate oxidase activity	8.58E-05
14	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	1.12E-04
15	GO:0008519: ammonium transmembrane transporter activity	1.41E-04
16	GO:0004332: fructose-bisphosphate aldolase activity	1.41E-04
17	GO:0004849: uridine kinase activity	1.71E-04
18	GO:0008047: enzyme activator activity	3.81E-04
19	GO:0008266: poly(U) RNA binding	5.39E-04
20	GO:0047134: protein-disulfide reductase activity	9.38E-04
21	GO:0010181: FMN binding	1.08E-03
22	GO:0004791: thioredoxin-disulfide reductase activity	1.08E-03
23	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.29E-03
24	GO:0051287: NAD binding	2.83E-03
25	GO:0031625: ubiquitin protein ligase binding	3.26E-03
26	GO:0015035: protein disulfide oxidoreductase activity	3.94E-03
27	GO:0016491: oxidoreductase activity	4.25E-03
28	GO:0061630: ubiquitin protein ligase activity	9.14E-03
29	GO:0005506: iron ion binding	2.85E-02
30	GO:0003824: catalytic activity	3.08E-02
31	GO:0004672: protein kinase activity	3.79E-02
32	GO:0016787: hydrolase activity	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0009570: chloroplast stroma	2.44E-07
2	GO:0009507: chloroplast	8.21E-07
3	GO:0048046: apoplast	1.91E-05
4	GO:0031969: chloroplast membrane	3.12E-05
5	GO:0005960: glycine cleavage complex	6.14E-05
6	GO:0009526: plastid envelope	8.58E-05
7	GO:0009534: chloroplast thylakoid	1.73E-04
8	GO:0009941: chloroplast envelope	3.53E-04
9	GO:0009536: plastid	4.49E-04
10	GO:0010319: stromule	1.39E-03
11	GO:0009707: chloroplast outer membrane	1.79E-03
12	GO:0005777: peroxisome	1.85E-03
13	GO:0009579: thylakoid	1.93E-03
14	GO:0031977: thylakoid lumen	2.36E-03
15	GO:0010287: plastoglobule	4.34E-03
16	GO:0046658: anchored component of plasma membrane	6.81E-03
17	GO:0009535: chloroplast thylakoid membrane	7.20E-03
18	GO:0005887: integral component of plasma membrane	1.44E-02
19	GO:0022626: cytosolic ribosome	1.69E-02
20	GO:0031225: anchored component of membrane	2.39E-02