co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G53035

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
2	GO:0071474: cellular hyperosmotic response	0.00E+00
3	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
4	GO:0070584: mitochondrion morphogenesis	0.00E+00
5	GO:0010378: temperature compensation of the circadian clock	0.00E+00
6	GO:0090279: regulation of calcium ion import	0.00E+00
7	GO:0009768: photosynthesis, light harvesting in photosystem I	1.08E-19
8	GO:0015979: photosynthesis	7.61E-13
9	GO:0018298: protein-chromophore linkage	3.19E-12
10	GO:0010218: response to far red light	4.14E-10
11	GO:0010114: response to red light	1.52E-09
12	GO:0009637: response to blue light	4.46E-08
13	GO:0009645: response to low light intensity stimulus	1.30E-07
14	GO:0009644: response to high light intensity	4.86E-06
15	GO:0009409: response to cold	1.67E-05
16	GO:0010196: nonphotochemical quenching	2.32E-05
17	GO:0009769: photosynthesis, light harvesting in photosystem II	2.32E-05
18	GO:0007623: circadian rhythm	4.78E-05
19	GO:0015812: gamma-aminobutyric acid transport	6.74E-05
20	GO:0032958: inositol phosphate biosynthetic process	6.74E-05
21	GO:0034472: snRNA 3'-end processing	6.74E-05
22	GO:0010496: intercellular transport	6.74E-05
23	GO:0080167: response to karrikin	1.56E-04
24	GO:0051262: protein tetramerization	1.62E-04
25	GO:0090057: root radial pattern formation	1.62E-04
26	GO:0051170: nuclear import	1.62E-04
27	GO:0010017: red or far-red light signaling pathway	2.53E-04
28	GO:0006598: polyamine catabolic process	2.75E-04
29	GO:0050482: arachidonic acid secretion	3.98E-04
30	GO:0006020: inositol metabolic process	3.98E-04
31	GO:0044211: CTP salvage	3.98E-04
32	GO:0031936: negative regulation of chromatin silencing	3.98E-04
33	GO:0009765: photosynthesis, light harvesting	5.32E-04
34	GO:2000306: positive regulation of photomorphogenesis	5.32E-04
35	GO:0010600: regulation of auxin biosynthetic process	5.32E-04
36	GO:0044206: UMP salvage	5.32E-04
37	GO:0030104: water homeostasis	5.32E-04
38	GO:1901657: glycosyl compound metabolic process	5.33E-04
39	GO:0048578: positive regulation of long-day photoperiodism, flowering	6.73E-04
40	GO:0043097: pyrimidine nucleoside salvage	6.73E-04
41	GO:0009416: response to light stimulus	7.25E-04
42	GO:0015995: chlorophyll biosynthetic process	7.86E-04
43	GO:0009635: response to herbicide	8.23E-04
44	GO:0045962: positive regulation of development, heterochronic	8.23E-04
45	GO:0006206: pyrimidine nucleobase metabolic process	8.23E-04
46	GO:0033365: protein localization to organelle	8.23E-04
47	GO:0000160: phosphorelay signal transduction system	9.07E-04
48	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	9.79E-04
49	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	9.79E-04
50	GO:0010119: regulation of stomatal movement	9.93E-04
51	GO:0010161: red light signaling pathway	1.14E-03
52	GO:0080111: DNA demethylation	1.14E-03
53	GO:0009704: de-etiolation	1.32E-03
54	GO:0006644: phospholipid metabolic process	1.32E-03
55	GO:0010928: regulation of auxin mediated signaling pathway	1.32E-03
56	GO:0042542: response to hydrogen peroxide	1.33E-03
57	GO:0008643: carbohydrate transport	1.49E-03
58	GO:0010099: regulation of photomorphogenesis	1.50E-03
59	GO:0007186: G-protein coupled receptor signaling pathway	1.50E-03
60	GO:0090333: regulation of stomatal closure	1.69E-03
61	GO:0009585: red, far-red light phototransduction	1.85E-03
62	GO:0009641: shade avoidance	2.10E-03
63	GO:0006949: syncytium formation	2.10E-03
64	GO:0018119: peptidyl-cysteine S-nitrosylation	2.31E-03
65	GO:0005983: starch catabolic process	2.53E-03
66	GO:0009718: anthocyanin-containing compound biosynthetic process	2.76E-03
67	GO:0009767: photosynthetic electron transport chain	2.76E-03
68	GO:0009266: response to temperature stimulus	2.99E-03
69	GO:0010207: photosystem II assembly	2.99E-03
70	GO:0006874: cellular calcium ion homeostasis	3.99E-03
71	GO:0003333: amino acid transmembrane transport	4.26E-03
72	GO:0048511: rhythmic process	4.26E-03
73	GO:0061077: chaperone-mediated protein folding	4.26E-03
74	GO:0009269: response to desiccation	4.26E-03
75	GO:0071215: cellular response to abscisic acid stimulus	4.81E-03
76	GO:0055085: transmembrane transport	5.57E-03
77	GO:0006814: sodium ion transport	6.28E-03
78	GO:0042752: regulation of circadian rhythm	6.28E-03
79	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	6.91E-03
80	GO:0000302: response to reactive oxygen species	6.91E-03
81	GO:0009828: plant-type cell wall loosening	7.90E-03
82	GO:0016579: protein deubiquitination	8.59E-03
83	GO:0016126: sterol biosynthetic process	8.93E-03
84	GO:0010029: regulation of seed germination	9.29E-03
85	GO:0006888: ER to Golgi vesicle-mediated transport	1.00E-02
86	GO:0045892: negative regulation of transcription, DNA-templated	1.04E-02
87	GO:0009817: defense response to fungus, incompatible interaction	1.08E-02
88	GO:0006811: ion transport	1.15E-02
89	GO:0009631: cold acclimation	1.19E-02
90	GO:0006839: mitochondrial transport	1.39E-02
91	GO:0051707: response to other organism	1.52E-02
92	GO:0009640: photomorphogenesis	1.52E-02
93	GO:0009965: leaf morphogenesis	1.65E-02
94	GO:0005975: carbohydrate metabolic process	1.71E-02
95	GO:0006812: cation transport	1.79E-02
96	GO:0009664: plant-type cell wall organization	1.79E-02
97	GO:0042538: hyperosmotic salinity response	1.79E-02
98	GO:0006351: transcription, DNA-templated	1.80E-02
99	GO:0009908: flower development	2.04E-02
100	GO:0043086: negative regulation of catalytic activity	2.12E-02
101	GO:0006355: regulation of transcription, DNA-templated	2.23E-02
102	GO:0009611: response to wounding	2.31E-02
103	GO:0009624: response to nematode	2.42E-02
104	GO:0009058: biosynthetic process	2.94E-02
105	GO:0009845: seed germination	3.00E-02
106	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.86E-02
107	GO:0009739: response to gibberellin	3.86E-02
108	GO:0010468: regulation of gene expression	4.04E-02
109	GO:0009414: response to water deprivation	4.44E-02
110	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	4.61E-02
111	GO:0009826: unidimensional cell growth	4.73E-02
112	GO:0009658: chloroplast organization	4.86E-02
113	GO:0030154: cell differentiation	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
2	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
3	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
4	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
5	GO:0090711: FMN hydrolase activity	0.00E+00
6	GO:0004567: beta-mannosidase activity	0.00E+00
7	GO:0080082: esculin beta-glucosidase activity	0.00E+00
8	GO:0031409: pigment binding	1.27E-17
9	GO:0016168: chlorophyll binding	1.12E-14
10	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	6.74E-05
11	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	6.74E-05
12	GO:0000829: inositol heptakisphosphate kinase activity	6.74E-05
13	GO:0005227: calcium activated cation channel activity	6.74E-05
14	GO:0080079: cellobiose glucosidase activity	6.74E-05
15	GO:0000828: inositol hexakisphosphate kinase activity	6.74E-05
16	GO:0015180: L-alanine transmembrane transporter activity	1.62E-04
17	GO:0016630: protochlorophyllide reductase activity	1.62E-04
18	GO:0046592: polyamine oxidase activity	2.75E-04
19	GO:0015189: L-lysine transmembrane transporter activity	3.98E-04
20	GO:0015181: arginine transmembrane transporter activity	3.98E-04
21	GO:0004845: uracil phosphoribosyltransferase activity	5.32E-04
22	GO:0005313: L-glutamate transmembrane transporter activity	5.32E-04
23	GO:0004506: squalene monooxygenase activity	5.32E-04
24	GO:0004930: G-protein coupled receptor activity	5.32E-04
25	GO:0000156: phosphorelay response regulator activity	5.33E-04
26	GO:0004623: phospholipase A2 activity	6.73E-04
27	GO:0102483: scopolin beta-glucosidase activity	7.86E-04
28	GO:0015562: efflux transmembrane transporter activity	8.23E-04
29	GO:0004556: alpha-amylase activity	8.23E-04
30	GO:0005261: cation channel activity	9.79E-04
31	GO:0004849: uridine kinase activity	9.79E-04
32	GO:0008422: beta-glucosidase activity	1.18E-03
33	GO:0004564: beta-fructofuranosidase activity	1.32E-03
34	GO:0000989: transcription factor activity, transcription factor binding	1.69E-03
35	GO:0004575: sucrose alpha-glucosidase activity	1.89E-03
36	GO:0044183: protein binding involved in protein folding	2.31E-03
37	GO:0047372: acylglycerol lipase activity	2.31E-03
38	GO:0005315: inorganic phosphate transmembrane transporter activity	2.76E-03
39	GO:0004565: beta-galactosidase activity	2.76E-03
40	GO:0015266: protein channel activity	2.76E-03
41	GO:0008131: primary amine oxidase activity	2.99E-03
42	GO:0004970: ionotropic glutamate receptor activity	3.23E-03
43	GO:0005217: intracellular ligand-gated ion channel activity	3.23E-03
44	GO:0005216: ion channel activity	3.99E-03
45	GO:0008324: cation transmembrane transporter activity	3.99E-03
46	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	4.26E-03
47	GO:0004707: MAP kinase activity	4.26E-03
48	GO:0015297: antiporter activity	4.28E-03
49	GO:0008514: organic anion transmembrane transporter activity	5.09E-03
50	GO:0046872: metal ion binding	6.25E-03
51	GO:0016787: hydrolase activity	6.63E-03
52	GO:0004843: thiol-dependent ubiquitin-specific protease activity	6.91E-03
53	GO:0005509: calcium ion binding	9.09E-03
54	GO:0005515: protein binding	1.02E-02
55	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.08E-02
56	GO:0003993: acid phosphatase activity	1.31E-02
57	GO:0042393: histone binding	1.39E-02
58	GO:0043621: protein self-association	1.61E-02
59	GO:0015293: symporter activity	1.65E-02
60	GO:0005198: structural molecule activity	1.65E-02
61	GO:0015171: amino acid transmembrane transporter activity	2.02E-02
62	GO:0022857: transmembrane transporter activity	2.31E-02
63	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.89E-02
64	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.98E-02
65	GO:0015144: carbohydrate transmembrane transporter activity	3.22E-02
66	GO:0046910: pectinesterase inhibitor activity	3.39E-02
67	GO:0005351: sugar:proton symporter activity	3.51E-02
68	GO:0008168: methyltransferase activity	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0009783: photosystem II antenna complex	0.00E+00
2	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
3	GO:0009534: chloroplast thylakoid	1.28E-16
4	GO:0009522: photosystem I	8.49E-16
5	GO:0009579: thylakoid	1.46E-13
6	GO:0030076: light-harvesting complex	6.56E-13
7	GO:0010287: plastoglobule	8.56E-12
8	GO:0009535: chloroplast thylakoid membrane	1.91E-11
9	GO:0009941: chloroplast envelope	2.05E-08
10	GO:0009523: photosystem II	2.77E-07
11	GO:0009517: PSII associated light-harvesting complex II	4.57E-06
12	GO:0009507: chloroplast	4.05E-05
13	GO:0042651: thylakoid membrane	2.09E-04
14	GO:0016021: integral component of membrane	3.54E-04
15	GO:0016020: membrane	4.01E-04
16	GO:0030127: COPII vesicle coat	8.23E-04
17	GO:0009533: chloroplast stromal thylakoid	1.14E-03
18	GO:0009538: photosystem I reaction center	1.32E-03
19	GO:0031966: mitochondrial membrane	1.72E-03
20	GO:0005938: cell cortex	2.76E-03
21	GO:0030095: chloroplast photosystem II	2.99E-03
22	GO:0009654: photosystem II oxygen evolving complex	3.99E-03
23	GO:0031410: cytoplasmic vesicle	4.53E-03
24	GO:0005744: mitochondrial inner membrane presequence translocase complex	5.09E-03
25	GO:0019898: extrinsic component of membrane	6.60E-03
26	GO:0009707: chloroplast outer membrane	1.08E-02
27	GO:0005743: mitochondrial inner membrane	1.18E-02
28	GO:0009505: plant-type cell wall	1.34E-02
29	GO:0031977: thylakoid lumen	1.44E-02
30	GO:0016607: nuclear speck	2.17E-02
31	GO:0005777: peroxisome	2.59E-02
32	GO:0005654: nucleoplasm	2.78E-02
33	GO:0009543: chloroplast thylakoid lumen	2.84E-02
34	GO:0005623: cell	2.89E-02