Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G52320

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0019484: beta-alanine catabolic process0.00E+00
2GO:2001253: regulation of histone H3-K36 trimethylation0.00E+00
3GO:0010793: regulation of mRNA export from nucleus0.00E+00
4GO:2000541: positive regulation of protein geranylgeranylation0.00E+00
5GO:0070291: N-acylethanolamine metabolic process0.00E+00
6GO:0000188: inactivation of MAPK activity0.00E+00
7GO:0010398: xylogalacturonan metabolic process0.00E+00
8GO:0016236: macroautophagy0.00E+00
9GO:0010606: positive regulation of cytoplasmic mRNA processing body assembly0.00E+00
10GO:0009448: gamma-aminobutyric acid metabolic process0.00E+00
11GO:0007160: cell-matrix adhesion0.00E+00
12GO:0010111: glyoxysome organization0.00E+00
13GO:0032889: regulation of vacuole fusion, non-autophagic0.00E+00
14GO:0006105: succinate metabolic process0.00E+00
15GO:0033320: UDP-D-xylose biosynthetic process3.29E-05
16GO:0042732: D-xylose metabolic process7.77E-05
17GO:0009865: pollen tube adhesion2.13E-04
18GO:1902265: abscisic acid homeostasis2.13E-04
19GO:0006540: glutamate decarboxylation to succinate2.13E-04
20GO:0010265: SCF complex assembly2.13E-04
21GO:0006144: purine nucleobase metabolic process2.13E-04
22GO:0046167: glycerol-3-phosphate biosynthetic process2.13E-04
23GO:0009966: regulation of signal transduction2.13E-04
24GO:0009450: gamma-aminobutyric acid catabolic process2.13E-04
25GO:0019628: urate catabolic process2.13E-04
26GO:0015760: glucose-6-phosphate transport2.13E-04
27GO:0030242: pexophagy2.13E-04
28GO:0000303: response to superoxide2.13E-04
29GO:0007584: response to nutrient4.76E-04
30GO:0016197: endosomal transport4.76E-04
31GO:0035542: regulation of SNARE complex assembly4.76E-04
32GO:0042325: regulation of phosphorylation4.76E-04
33GO:0051258: protein polymerization4.76E-04
34GO:0034243: regulation of transcription elongation from RNA polymerase II promoter4.76E-04
35GO:0019395: fatty acid oxidation4.76E-04
36GO:0009257: 10-formyltetrahydrofolate biosynthetic process4.76E-04
37GO:0010033: response to organic substance4.76E-04
38GO:0050684: regulation of mRNA processing4.76E-04
39GO:0006641: triglyceride metabolic process4.76E-04
40GO:0006979: response to oxidative stress5.43E-04
41GO:0010102: lateral root morphogenesis5.75E-04
42GO:0007033: vacuole organization7.24E-04
43GO:0009225: nucleotide-sugar metabolic process7.24E-04
44GO:0019563: glycerol catabolic process7.74E-04
45GO:0032784: regulation of DNA-templated transcription, elongation7.74E-04
46GO:0035436: triose phosphate transmembrane transport7.74E-04
47GO:0033523: histone H2B ubiquitination7.74E-04
48GO:0030029: actin filament-based process7.74E-04
49GO:0015714: phosphoenolpyruvate transport7.74E-04
50GO:0032786: positive regulation of DNA-templated transcription, elongation7.74E-04
51GO:0009695: jasmonic acid biosynthetic process9.78E-04
52GO:0006072: glycerol-3-phosphate metabolic process1.10E-03
53GO:0006809: nitric oxide biosynthetic process1.10E-03
54GO:0009399: nitrogen fixation1.10E-03
55GO:0006882: cellular zinc ion homeostasis1.10E-03
56GO:0048194: Golgi vesicle budding1.10E-03
57GO:0006020: inositol metabolic process1.10E-03
58GO:0009650: UV protection1.10E-03
59GO:0009113: purine nucleobase biosynthetic process1.10E-03
60GO:0006468: protein phosphorylation1.17E-03
61GO:0046686: response to cadmium ion1.41E-03
62GO:0045324: late endosome to vacuole transport1.47E-03
63GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA1.47E-03
64GO:0010188: response to microbial phytotoxin1.47E-03
65GO:0015713: phosphoglycerate transport1.47E-03
66GO:0006878: cellular copper ion homeostasis1.47E-03
67GO:0006646: phosphatidylethanolamine biosynthetic process1.47E-03
68GO:0009687: abscisic acid metabolic process1.47E-03
69GO:0015743: malate transport1.47E-03
70GO:0010107: potassium ion import1.47E-03
71GO:0006536: glutamate metabolic process1.47E-03
72GO:0009789: positive regulation of abscisic acid-activated signaling pathway1.49E-03
73GO:0006970: response to osmotic stress1.49E-03
74GO:0000413: protein peptidyl-prolyl isomerization1.61E-03
75GO:0098719: sodium ion import across plasma membrane1.87E-03
76GO:0005513: detection of calcium ion1.87E-03
77GO:0043097: pyrimidine nucleoside salvage1.87E-03
78GO:0018344: protein geranylgeranylation1.87E-03
79GO:0010225: response to UV-C1.87E-03
80GO:0010183: pollen tube guidance1.99E-03
81GO:0006623: protein targeting to vacuole1.99E-03
82GO:0006635: fatty acid beta-oxidation2.13E-03
83GO:0006206: pyrimidine nucleobase metabolic process2.31E-03
84GO:0006014: D-ribose metabolic process2.31E-03
85GO:0010264: myo-inositol hexakisphosphate biosynthetic process2.31E-03
86GO:0034314: Arp2/3 complex-mediated actin nucleation2.31E-03
87GO:0010358: leaf shaping2.31E-03
88GO:0033962: cytoplasmic mRNA processing body assembly2.77E-03
89GO:0017148: negative regulation of translation2.77E-03
90GO:0048280: vesicle fusion with Golgi apparatus2.77E-03
91GO:0034389: lipid particle organization2.77E-03
92GO:0009612: response to mechanical stimulus2.77E-03
93GO:0009816: defense response to bacterium, incompatible interaction3.25E-03
94GO:0006614: SRP-dependent cotranslational protein targeting to membrane3.26E-03
95GO:0009396: folic acid-containing compound biosynthetic process3.26E-03
96GO:0098869: cellular oxidant detoxification3.26E-03
97GO:0046470: phosphatidylcholine metabolic process3.26E-03
98GO:0009819: drought recovery3.78E-03
99GO:0006605: protein targeting3.78E-03
100GO:0009415: response to water3.78E-03
101GO:0006875: cellular metal ion homeostasis3.78E-03
102GO:0006972: hyperosmotic response4.33E-03
103GO:0010119: regulation of stomatal movement4.62E-03
104GO:0000902: cell morphogenesis4.90E-03
105GO:0009051: pentose-phosphate shunt, oxidative branch4.90E-03
106GO:0009873: ethylene-activated signaling pathway4.93E-03
107GO:0009867: jasmonic acid mediated signaling pathway5.07E-03
108GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway5.50E-03
109GO:0008202: steroid metabolic process5.50E-03
110GO:0051453: regulation of intracellular pH5.50E-03
111GO:0035999: tetrahydrofolate interconversion5.50E-03
112GO:0006535: cysteine biosynthetic process from serine6.12E-03
113GO:0006896: Golgi to vacuole transport6.12E-03
114GO:0006325: chromatin organization6.12E-03
115GO:0048829: root cap development6.12E-03
116GO:0006298: mismatch repair6.12E-03
117GO:0000209: protein polyubiquitination6.79E-03
118GO:0071365: cellular response to auxin stimulus7.44E-03
119GO:0012501: programmed cell death7.44E-03
120GO:0010152: pollen maturation7.44E-03
121GO:0006006: glucose metabolic process8.13E-03
122GO:0030036: actin cytoskeleton organization8.13E-03
123GO:0009737: response to abscisic acid8.56E-03
124GO:0035556: intracellular signal transduction8.67E-03
125GO:0006541: glutamine metabolic process8.84E-03
126GO:0002237: response to molecule of bacterial origin8.84E-03
127GO:0007015: actin filament organization8.84E-03
128GO:0048467: gynoecium development8.84E-03
129GO:0009825: multidimensional cell growth9.58E-03
130GO:0010167: response to nitrate9.58E-03
131GO:0005985: sucrose metabolic process9.58E-03
132GO:0010030: positive regulation of seed germination9.58E-03
133GO:0007031: peroxisome organization9.58E-03
134GO:0034976: response to endoplasmic reticulum stress1.03E-02
135GO:0000162: tryptophan biosynthetic process1.03E-02
136GO:0048367: shoot system development1.08E-02
137GO:0006289: nucleotide-excision repair1.11E-02
138GO:2000377: regulation of reactive oxygen species metabolic process1.11E-02
139GO:0019344: cysteine biosynthetic process1.11E-02
140GO:0006886: intracellular protein transport1.18E-02
141GO:0006825: copper ion transport1.19E-02
142GO:0009624: response to nematode1.26E-02
143GO:0009269: response to desiccation1.27E-02
144GO:0031408: oxylipin biosynthetic process1.27E-02
145GO:0030433: ubiquitin-dependent ERAD pathway1.36E-02
146GO:0035428: hexose transmembrane transport1.36E-02
147GO:0048364: root development1.57E-02
148GO:0006397: mRNA processing1.57E-02
149GO:0042147: retrograde transport, endosome to Golgi1.62E-02
150GO:0009845: seed germination1.71E-02
151GO:0080022: primary root development1.72E-02
152GO:0042391: regulation of membrane potential1.72E-02
153GO:0010051: xylem and phloem pattern formation1.72E-02
154GO:0010087: phloem or xylem histogenesis1.72E-02
155GO:0010118: stomatal movement1.72E-02
156GO:0045489: pectin biosynthetic process1.81E-02
157GO:0010154: fruit development1.81E-02
158GO:0046323: glucose import1.81E-02
159GO:0009790: embryo development1.84E-02
160GO:0048544: recognition of pollen1.91E-02
161GO:0006814: sodium ion transport1.91E-02
162GO:0042752: regulation of circadian rhythm1.91E-02
163GO:0006633: fatty acid biosynthetic process1.98E-02
164GO:0009749: response to glucose2.00E-02
165GO:0019252: starch biosynthetic process2.00E-02
166GO:0008654: phospholipid biosynthetic process2.00E-02
167GO:0009651: response to salt stress2.05E-02
168GO:0006891: intra-Golgi vesicle-mediated transport2.10E-02
169GO:0010193: response to ozone2.10E-02
170GO:0009630: gravitropism2.20E-02
171GO:0007264: small GTPase mediated signal transduction2.20E-02
172GO:0010583: response to cyclopentenone2.20E-02
173GO:0016032: viral process2.20E-02
174GO:0010090: trichome morphogenesis2.31E-02
175GO:0006914: autophagy2.41E-02
176GO:0071805: potassium ion transmembrane transport2.52E-02
177GO:0009617: response to bacterium2.60E-02
178GO:0051607: defense response to virus2.62E-02
179GO:0009911: positive regulation of flower development2.73E-02
180GO:0009738: abscisic acid-activated signaling pathway2.93E-02
181GO:0048573: photoperiodism, flowering3.07E-02
182GO:0006950: response to stress3.07E-02
183GO:0006888: ER to Golgi vesicle-mediated transport3.07E-02
184GO:0009611: response to wounding3.14E-02
185GO:0008219: cell death3.30E-02
186GO:0010311: lateral root formation3.42E-02
187GO:0006811: ion transport3.54E-02
188GO:0009409: response to cold3.60E-02
189GO:0009631: cold acclimation3.66E-02
190GO:0010043: response to zinc ion3.66E-02
191GO:0009723: response to ethylene3.89E-02
192GO:0016051: carbohydrate biosynthetic process3.91E-02
193GO:0009637: response to blue light3.91E-02
194GO:0045087: innate immune response3.91E-02
195GO:0006457: protein folding4.19E-02
196GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.31E-02
197GO:0006897: endocytosis4.41E-02
198GO:0006631: fatty acid metabolic process4.41E-02
199GO:0046777: protein autophosphorylation4.45E-02
200GO:0045454: cell redox homeostasis4.97E-02
RankGO TermAdjusted P value
1GO:0103073: anandamide amidohydrolase activity0.00E+00
2GO:0102077: oleamide hydrolase activity0.00E+00
3GO:0034387: 4-aminobutyrate:pyruvate transaminase activity0.00E+00
4GO:0004370: glycerol kinase activity0.00E+00
5GO:0004491: methylmalonate-semialdehyde dehydrogenase (acylating) activity0.00E+00
6GO:0005092: GDP-dissociation inhibitor activity0.00E+00
7GO:0004846: urate oxidase activity0.00E+00
8GO:0047412: N-(long-chain-acyl)ethanolamine deacylase activity0.00E+00
9GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity0.00E+00
10GO:0017017: MAP kinase tyrosine/serine/threonine phosphatase activity0.00E+00
11GO:0051766: inositol trisphosphate kinase activity0.00E+00
12GO:0005548: phospholipid transporter activity0.00E+00
13GO:0047787: delta4-3-oxosteroid 5beta-reductase activity0.00E+00
14GO:0051765: inositol tetrakisphosphate kinase activity0.00E+00
15GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism2.52E-05
16GO:0048040: UDP-glucuronate decarboxylase activity7.77E-05
17GO:0003950: NAD+ ADP-ribosyltransferase activity1.08E-04
18GO:0004012: phospholipid-translocating ATPase activity1.08E-04
19GO:0070403: NAD+ binding1.08E-04
20GO:0005524: ATP binding1.59E-04
21GO:0034450: ubiquitin-ubiquitin ligase activity2.13E-04
22GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity2.13E-04
23GO:0003867: 4-aminobutyrate transaminase activity2.13E-04
24GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity2.13E-04
25GO:0035671: enone reductase activity2.13E-04
26GO:0000824: inositol tetrakisphosphate 3-kinase activity2.13E-04
27GO:0008692: 3-hydroxybutyryl-CoA epimerase activity2.13E-04
28GO:0047326: inositol tetrakisphosphate 5-kinase activity2.13E-04
29GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity2.13E-04
30GO:0005509: calcium ion binding4.44E-04
31GO:0004329: formate-tetrahydrofolate ligase activity4.76E-04
32GO:0019200: carbohydrate kinase activity4.76E-04
33GO:0003988: acetyl-CoA C-acyltransferase activity4.76E-04
34GO:0004609: phosphatidylserine decarboxylase activity4.76E-04
35GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity4.76E-04
36GO:0015152: glucose-6-phosphate transmembrane transporter activity4.76E-04
37GO:0004477: methenyltetrahydrofolate cyclohydrolase activity4.76E-04
38GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity4.76E-04
39GO:0005096: GTPase activator activity5.02E-04
40GO:0019888: protein phosphatase regulator activity5.75E-04
41GO:0004383: guanylate cyclase activity7.74E-04
42GO:0071917: triose-phosphate transmembrane transporter activity7.74E-04
43GO:0005093: Rab GDP-dissociation inhibitor activity7.74E-04
44GO:0005047: signal recognition particle binding7.74E-04
45GO:0019829: cation-transporting ATPase activity7.74E-04
46GO:0004165: dodecenoyl-CoA delta-isomerase activity1.10E-03
47GO:0004300: enoyl-CoA hydratase activity1.10E-03
48GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity1.10E-03
49GO:0001653: peptide receptor activity1.10E-03
50GO:0005253: anion channel activity1.47E-03
51GO:0000993: RNA polymerase II core binding1.47E-03
52GO:0015120: phosphoglycerate transmembrane transporter activity1.47E-03
53GO:0004834: tryptophan synthase activity1.47E-03
54GO:0004345: glucose-6-phosphate dehydrogenase activity1.47E-03
55GO:0043015: gamma-tubulin binding1.47E-03
56GO:0005546: phosphatidylinositol-4,5-bisphosphate binding1.87E-03
57GO:0017137: Rab GTPase binding1.87E-03
58GO:0004040: amidase activity1.87E-03
59GO:0004356: glutamate-ammonia ligase activity1.87E-03
60GO:0010294: abscisic acid glucosyltransferase activity1.87E-03
61GO:0016301: kinase activity2.16E-03
62GO:0035252: UDP-xylosyltransferase activity2.31E-03
63GO:0003730: mRNA 3'-UTR binding2.77E-03
64GO:0070300: phosphatidic acid binding2.77E-03
65GO:0004602: glutathione peroxidase activity2.77E-03
66GO:0004747: ribokinase activity2.77E-03
67GO:0004124: cysteine synthase activity2.77E-03
68GO:0004849: uridine kinase activity2.77E-03
69GO:0015140: malate transmembrane transporter activity3.26E-03
70GO:0004620: phospholipase activity3.26E-03
71GO:0004525: ribonuclease III activity3.78E-03
72GO:0004869: cysteine-type endopeptidase inhibitor activity3.78E-03
73GO:0008865: fructokinase activity3.78E-03
74GO:0005337: nucleoside transmembrane transporter activity3.78E-03
75GO:0005516: calmodulin binding4.07E-03
76GO:0003729: mRNA binding4.25E-03
77GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity4.33E-03
78GO:0005375: copper ion transmembrane transporter activity4.33E-03
79GO:0004630: phospholipase D activity4.33E-03
80GO:0005267: potassium channel activity4.33E-03
81GO:0050897: cobalt ion binding4.62E-03
82GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity5.50E-03
83GO:0004712: protein serine/threonine/tyrosine kinase activity5.53E-03
84GO:0004713: protein tyrosine kinase activity6.12E-03
85GO:0004674: protein serine/threonine kinase activity6.47E-03
86GO:0015386: potassium:proton antiporter activity6.77E-03
87GO:0003755: peptidyl-prolyl cis-trans isomerase activity7.62E-03
88GO:0005315: inorganic phosphate transmembrane transporter activity8.13E-03
89GO:0030552: cAMP binding9.58E-03
90GO:0030553: cGMP binding9.58E-03
91GO:0031625: ubiquitin protein ligase binding9.75E-03
92GO:0004725: protein tyrosine phosphatase activity1.03E-02
93GO:0043130: ubiquitin binding1.11E-02
94GO:0005216: ion channel activity1.19E-02
95GO:0043424: protein histidine kinase binding1.19E-02
96GO:0003779: actin binding1.22E-02
97GO:0004672: protein kinase activity1.33E-02
98GO:0005507: copper ion binding1.36E-02
99GO:0003727: single-stranded RNA binding1.53E-02
100GO:0003756: protein disulfide isomerase activity1.53E-02
101GO:0005249: voltage-gated potassium channel activity1.72E-02
102GO:0030551: cyclic nucleotide binding1.72E-02
103GO:0030170: pyridoxal phosphate binding1.75E-02
104GO:0016853: isomerase activity1.91E-02
105GO:0005355: glucose transmembrane transporter activity1.91E-02
106GO:0004872: receptor activity2.00E-02
107GO:0015385: sodium:proton antiporter activity2.31E-02
108GO:0003684: damaged DNA binding2.41E-02
109GO:0005200: structural constituent of cytoskeleton2.52E-02
110GO:0042626: ATPase activity, coupled to transmembrane movement of substances2.77E-02
111GO:0009931: calcium-dependent protein serine/threonine kinase activity2.95E-02
112GO:0000166: nucleotide binding3.05E-02
113GO:0004683: calmodulin-dependent protein kinase activity3.07E-02
114GO:0000287: magnesium ion binding3.31E-02
115GO:0003746: translation elongation factor activity3.91E-02
116GO:0003697: single-stranded DNA binding3.91E-02
117GO:0000149: SNARE binding4.16E-02
118GO:0050661: NADP binding4.29E-02
119GO:0061630: ubiquitin protein ligase activity4.38E-02
120GO:0005484: SNAP receptor activity4.68E-02
121GO:0043621: protein self-association4.94E-02
RankGO TermAdjusted P value
1GO:0071942: XPC complex0.00E+00
2GO:0000111: nucleotide-excision repair factor 2 complex0.00E+00
3GO:0005785: signal recognition particle receptor complex0.00E+00
4GO:0008305: integrin complex0.00E+00
5GO:0071561: nucleus-vacuole junction0.00E+00
6GO:0005829: cytosol1.33E-06
7GO:0005794: Golgi apparatus5.12E-06
8GO:0005886: plasma membrane1.26E-05
9GO:0005768: endosome1.52E-05
10GO:0005802: trans-Golgi network6.22E-05
11GO:0031902: late endosome membrane8.23E-05
12GO:0005774: vacuolar membrane8.72E-05
13GO:0016363: nuclear matrix1.08E-04
14GO:0032044: DSIF complex2.13E-04
15GO:0034272: phosphatidylinositol 3-kinase complex, class III, type II2.13E-04
16GO:0034271: phosphatidylinositol 3-kinase complex, class III, type I2.13E-04
17GO:0030897: HOPS complex4.76E-04
18GO:0032777: Piccolo NuA4 histone acetyltransferase complex4.76E-04
19GO:0031461: cullin-RING ubiquitin ligase complex1.10E-03
20GO:0005968: Rab-protein geranylgeranyltransferase complex1.10E-03
21GO:0005737: cytoplasm1.49E-03
22GO:0005770: late endosome1.73E-03
23GO:0005783: endoplasmic reticulum2.28E-03
24GO:0030140: trans-Golgi network transport vesicle2.31E-03
25GO:0032580: Golgi cisterna membrane2.58E-03
26GO:0005885: Arp2/3 protein complex2.77E-03
27GO:0000794: condensed nuclear chromosome3.26E-03
28GO:0012507: ER to Golgi transport vesicle membrane3.78E-03
29GO:0030131: clathrin adaptor complex3.78E-03
30GO:0009705: plant-type vacuole membrane3.95E-03
31GO:0000151: ubiquitin ligase complex4.00E-03
32GO:0005786: signal recognition particle, endoplasmic reticulum targeting4.33E-03
33GO:0009514: glyoxysome4.33E-03
34GO:0005789: endoplasmic reticulum membrane4.47E-03
35GO:0030125: clathrin vesicle coat6.12E-03
36GO:0005765: lysosomal membrane6.77E-03
37GO:0043234: protein complex1.03E-02
38GO:0010008: endosome membrane1.08E-02
39GO:0000139: Golgi membrane1.16E-02
40GO:0005905: clathrin-coated pit1.27E-02
41GO:0030136: clathrin-coated vesicle1.62E-02
42GO:0005773: vacuole1.97E-02
43GO:0016021: integral component of membrane2.13E-02
44GO:0000932: P-body2.73E-02
45GO:0005788: endoplasmic reticulum lumen2.84E-02
46GO:0005643: nuclear pore3.30E-02
47GO:0005777: peroxisome3.62E-02
48GO:0000325: plant-type vacuole3.66E-02
49GO:0015934: large ribosomal subunit3.66E-02
50GO:0005819: spindle4.16E-02
51GO:0031201: SNARE complex4.41E-02
52GO:0090406: pollen tube4.68E-02
Gene type



Gene DE type