Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G52140

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:2001294: malonyl-CoA catabolic process0.00E+00
2GO:0033494: ferulate metabolic process0.00E+00
3GO:0007638: mechanosensory behavior0.00E+00
4GO:0090393: sepal giant cell development0.00E+00
5GO:2000122: negative regulation of stomatal complex development1.63E-05
6GO:0010037: response to carbon dioxide1.63E-05
7GO:0015976: carbon utilization1.63E-05
8GO:0006833: water transport1.77E-05
9GO:0006633: fatty acid biosynthetic process2.20E-05
10GO:0034220: ion transmembrane transport5.71E-05
11GO:0006810: transport6.87E-05
12GO:0071555: cell wall organization1.30E-04
13GO:0051775: response to redox state1.42E-04
14GO:0071370: cellular response to gibberellin stimulus1.42E-04
15GO:0033481: galacturonate biosynthetic process1.42E-04
16GO:0046520: sphingoid biosynthetic process1.42E-04
17GO:0010411: xyloglucan metabolic process1.92E-04
18GO:0000038: very long-chain fatty acid metabolic process2.49E-04
19GO:0009773: photosynthetic electron transport in photosystem I2.49E-04
20GO:0045490: pectin catabolic process2.82E-04
21GO:0015786: UDP-glucose transport3.25E-04
22GO:0042546: cell wall biogenesis4.47E-04
23GO:0015783: GDP-fucose transport5.33E-04
24GO:0033591: response to L-ascorbic acid5.33E-04
25GO:0006753: nucleoside phosphate metabolic process5.33E-04
26GO:0006168: adenine salvage7.63E-04
27GO:0032877: positive regulation of DNA endoreduplication7.63E-04
28GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly7.63E-04
29GO:0006166: purine ribonucleoside salvage7.63E-04
30GO:0007231: osmosensory signaling pathway7.63E-04
31GO:0006107: oxaloacetate metabolic process7.63E-04
32GO:0006241: CTP biosynthetic process7.63E-04
33GO:0072334: UDP-galactose transmembrane transport7.63E-04
34GO:0080170: hydrogen peroxide transmembrane transport7.63E-04
35GO:0006165: nucleoside diphosphate phosphorylation7.63E-04
36GO:0006228: UTP biosynthetic process7.63E-04
37GO:0019722: calcium-mediated signaling7.98E-04
38GO:0042545: cell wall modification9.26E-04
39GO:0042335: cuticle development9.27E-04
40GO:0015979: photosynthesis9.44E-04
41GO:0033500: carbohydrate homeostasis1.01E-03
42GO:0031122: cytoplasmic microtubule organization1.01E-03
43GO:0006734: NADH metabolic process1.01E-03
44GO:0006183: GTP biosynthetic process1.01E-03
45GO:0055085: transmembrane transport1.09E-03
46GO:0046785: microtubule polymerization1.28E-03
47GO:0044209: AMP salvage1.28E-03
48GO:0006656: phosphatidylcholine biosynthetic process1.28E-03
49GO:0007267: cell-cell signaling1.56E-03
50GO:0009913: epidermal cell differentiation1.57E-03
51GO:0006596: polyamine biosynthetic process1.57E-03
52GO:0048759: xylem vessel member cell differentiation1.57E-03
53GO:0010405: arabinogalactan protein metabolic process1.57E-03
54GO:0018258: protein O-linked glycosylation via hydroxyproline1.57E-03
55GO:0000741: karyogamy1.57E-03
56GO:0016126: sterol biosynthetic process1.74E-03
57GO:0045926: negative regulation of growth1.88E-03
58GO:0015937: coenzyme A biosynthetic process2.21E-03
59GO:0030497: fatty acid elongation2.21E-03
60GO:0050829: defense response to Gram-negative bacterium2.21E-03
61GO:0018298: protein-chromophore linkage2.27E-03
62GO:0009850: auxin metabolic process2.56E-03
63GO:0007155: cell adhesion2.56E-03
64GO:0008610: lipid biosynthetic process2.56E-03
65GO:0010119: regulation of stomatal movement2.61E-03
66GO:0043069: negative regulation of programmed cell death4.12E-03
67GO:0019538: protein metabolic process4.12E-03
68GO:1903507: negative regulation of nucleic acid-templated transcription4.55E-03
69GO:0006816: calcium ion transport4.55E-03
70GO:0006108: malate metabolic process5.45E-03
71GO:0009725: response to hormone5.45E-03
72GO:0010143: cutin biosynthetic process5.92E-03
73GO:0070588: calcium ion transmembrane transport6.41E-03
74GO:0009225: nucleotide-sugar metabolic process6.41E-03
75GO:0005985: sucrose metabolic process6.41E-03
76GO:0010025: wax biosynthetic process6.91E-03
77GO:0006636: unsaturated fatty acid biosynthetic process6.91E-03
78GO:0009833: plant-type primary cell wall biogenesis6.91E-03
79GO:0005992: trehalose biosynthetic process7.42E-03
80GO:0006487: protein N-linked glycosylation7.42E-03
81GO:0009742: brassinosteroid mediated signaling pathway7.46E-03
82GO:0009768: photosynthesis, light harvesting in photosystem I7.95E-03
83GO:0016998: cell wall macromolecule catabolic process8.49E-03
84GO:2000022: regulation of jasmonic acid mediated signaling pathway9.05E-03
85GO:0019748: secondary metabolic process9.05E-03
86GO:0009414: response to water deprivation9.32E-03
87GO:0009294: DNA mediated transformation9.62E-03
88GO:0080022: primary root development1.14E-02
89GO:0010087: phloem or xylem histogenesis1.14E-02
90GO:0010197: polar nucleus fusion1.20E-02
91GO:0009741: response to brassinosteroid1.20E-02
92GO:0007623: circadian rhythm1.22E-02
93GO:0016132: brassinosteroid biosynthetic process1.39E-02
94GO:0071554: cell wall organization or biogenesis1.39E-02
95GO:0010583: response to cyclopentenone1.46E-02
96GO:0009617: response to bacterium1.46E-02
97GO:0009416: response to light stimulus1.47E-02
98GO:0010090: trichome morphogenesis1.53E-02
99GO:0009409: response to cold1.53E-02
100GO:1901657: glycosyl compound metabolic process1.53E-02
101GO:0005975: carbohydrate metabolic process1.81E-02
102GO:0009826: unidimensional cell growth1.82E-02
103GO:0009788: negative regulation of abscisic acid-activated signaling pathway1.88E-02
104GO:0042128: nitrate assimilation1.96E-02
105GO:0009817: defense response to fungus, incompatible interaction2.19E-02
106GO:0000160: phosphorelay signal transduction system2.26E-02
107GO:0010218: response to far red light2.34E-02
108GO:0009867: jasmonic acid mediated signaling pathway2.59E-02
109GO:0009637: response to blue light2.59E-02
110GO:0006099: tricarboxylic acid cycle2.67E-02
111GO:0006631: fatty acid metabolic process2.93E-02
112GO:0006869: lipid transport3.08E-02
113GO:0009640: photomorphogenesis3.10E-02
114GO:0010114: response to red light3.10E-02
115GO:0009926: auxin polar transport3.10E-02
116GO:0009744: response to sucrose3.10E-02
117GO:0009644: response to high light intensity3.28E-02
118GO:0008643: carbohydrate transport3.28E-02
119GO:0006855: drug transmembrane transport3.46E-02
120GO:0031347: regulation of defense response3.55E-02
121GO:0009736: cytokinin-activated signaling pathway3.83E-02
122GO:0051603: proteolysis involved in cellular protein catabolic process3.93E-02
123GO:0006857: oligopeptide transport4.02E-02
124GO:0009624: response to nematode4.92E-02
RankGO TermAdjusted P value
1GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
2GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
3GO:0010487: thermospermine synthase activity0.00E+00
4GO:0016762: xyloglucan:xyloglucosyl transferase activity8.85E-05
5GO:0030599: pectinesterase activity9.93E-05
6GO:0010945: CoA pyrophosphatase activity1.42E-04
7GO:0052638: indole-3-butyrate beta-glucosyltransferase activity1.42E-04
8GO:0008568: microtubule-severing ATPase activity1.42E-04
9GO:0016768: spermine synthase activity1.42E-04
10GO:0008746: NAD(P)+ transhydrogenase activity1.42E-04
11GO:0004328: formamidase activity1.42E-04
12GO:0000248: C-5 sterol desaturase activity1.42E-04
13GO:0000170: sphingosine hydroxylase activity1.42E-04
14GO:0047259: glucomannan 4-beta-mannosyltransferase activity1.42E-04
15GO:0080132: fatty acid alpha-hydroxylase activity1.42E-04
16GO:0015250: water channel activity1.52E-04
17GO:0016798: hydrolase activity, acting on glycosyl bonds1.92E-04
18GO:0008967: phosphoglycolate phosphatase activity3.25E-04
19GO:0000234: phosphoethanolamine N-methyltransferase activity3.25E-04
20GO:0042389: omega-3 fatty acid desaturase activity3.25E-04
21GO:0016297: acyl-[acyl-carrier-protein] hydrolase activity3.25E-04
22GO:0042284: sphingolipid delta-4 desaturase activity3.25E-04
23GO:0004089: carbonate dehydratase activity3.27E-04
24GO:0102337: 3-oxo-cerotoyl-CoA synthase activity4.63E-04
25GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity4.63E-04
26GO:0102336: 3-oxo-arachidoyl-CoA synthase activity4.63E-04
27GO:0005457: GDP-fucose transmembrane transporter activity5.33E-04
28GO:0050734: hydroxycinnamoyltransferase activity5.33E-04
29GO:0045330: aspartyl esterase activity7.04E-04
30GO:0003999: adenine phosphoribosyltransferase activity7.63E-04
31GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity7.63E-04
32GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity7.63E-04
33GO:0005460: UDP-glucose transmembrane transporter activity7.63E-04
34GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides7.63E-04
35GO:0004550: nucleoside diphosphate kinase activity7.63E-04
36GO:0050378: UDP-glucuronate 4-epimerase activity1.01E-03
37GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.01E-03
38GO:0052793: pectin acetylesterase activity1.01E-03
39GO:0004506: squalene monooxygenase activity1.01E-03
40GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.17E-03
41GO:0009922: fatty acid elongase activity1.28E-03
42GO:0005459: UDP-galactose transmembrane transporter activity1.28E-03
43GO:0000210: NAD+ diphosphatase activity1.57E-03
44GO:0016615: malate dehydrogenase activity1.57E-03
45GO:1990714: hydroxyproline O-galactosyltransferase activity1.57E-03
46GO:0016168: chlorophyll binding1.84E-03
47GO:0051753: mannan synthase activity1.88E-03
48GO:0004723: calcium-dependent protein serine/threonine phosphatase activity1.88E-03
49GO:0030060: L-malate dehydrogenase activity1.88E-03
50GO:0004564: beta-fructofuranosidase activity2.56E-03
51GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process2.56E-03
52GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water2.93E-03
53GO:0004185: serine-type carboxypeptidase activity3.68E-03
54GO:0004575: sucrose alpha-glucosidase activity3.71E-03
55GO:0004805: trehalose-phosphatase activity4.12E-03
56GO:0004860: protein kinase inhibitor activity4.55E-03
57GO:0052689: carboxylic ester hydrolase activity4.92E-03
58GO:0008081: phosphoric diester hydrolase activity5.45E-03
59GO:0005262: calcium channel activity5.45E-03
60GO:0031625: ubiquitin protein ligase binding5.48E-03
61GO:0004650: polygalacturonase activity6.43E-03
62GO:0022857: transmembrane transporter activity6.62E-03
63GO:0031409: pigment binding6.91E-03
64GO:0016746: transferase activity, transferring acyl groups7.24E-03
65GO:0004857: enzyme inhibitor activity7.42E-03
66GO:0003714: transcription corepressor activity7.42E-03
67GO:0043424: protein histidine kinase binding7.95E-03
68GO:0016758: transferase activity, transferring hexosyl groups8.58E-03
69GO:0030570: pectate lyase activity9.62E-03
70GO:0022891: substrate-specific transmembrane transporter activity9.62E-03
71GO:0008514: organic anion transmembrane transporter activity1.02E-02
72GO:0015297: antiporter activity1.16E-02
73GO:0004872: receptor activity1.33E-02
74GO:0048038: quinone binding1.39E-02
75GO:0016491: oxidoreductase activity1.46E-02
76GO:0000156: phosphorelay response regulator activity1.53E-02
77GO:0016722: oxidoreductase activity, oxidizing metal ions1.67E-02
78GO:0016413: O-acetyltransferase activity1.74E-02
79GO:0008375: acetylglucosaminyltransferase activity1.96E-02
80GO:0009931: calcium-dependent protein serine/threonine kinase activity1.96E-02
81GO:0004683: calmodulin-dependent protein kinase activity2.03E-02
82GO:0102483: scopolin beta-glucosidase activity2.03E-02
83GO:0015238: drug transmembrane transporter activity2.26E-02
84GO:0008422: beta-glucosidase activity2.76E-02
85GO:0004871: signal transducer activity2.94E-02
86GO:0016787: hydrolase activity3.01E-02
87GO:0015293: symporter activity3.37E-02
88GO:0005506: iron ion binding3.50E-02
89GO:0003824: catalytic activity4.00E-02
90GO:0005215: transporter activity4.04E-02
91GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups4.42E-02
92GO:0080043: quercetin 3-O-glucosyltransferase activity4.62E-02
93GO:0080044: quercetin 7-O-glucosyltransferase activity4.62E-02
94GO:0008289: lipid binding4.79E-02
RankGO TermAdjusted P value
1GO:0048046: apoplast1.81E-07
2GO:0005576: extracellular region1.48E-06
3GO:0009505: plant-type cell wall4.20E-05
4GO:0005618: cell wall7.04E-05
5GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.50E-04
6GO:0009535: chloroplast thylakoid membrane2.31E-04
7GO:0042170: plastid membrane3.25E-04
8GO:0016021: integral component of membrane5.37E-04
9GO:0005775: vacuolar lumen7.63E-04
10GO:0005789: endoplasmic reticulum membrane1.41E-03
11GO:0009507: chloroplast1.48E-03
12GO:0005887: integral component of plasma membrane2.21E-03
13GO:0005886: plasma membrane3.30E-03
14GO:0055028: cortical microtubule4.12E-03
15GO:0009941: chloroplast envelope4.37E-03
16GO:0048471: perinuclear region of cytoplasm4.55E-03
17GO:0030095: chloroplast photosystem II5.92E-03
18GO:0030076: light-harvesting complex6.41E-03
19GO:0031225: anchored component of membrane6.51E-03
20GO:0005758: mitochondrial intermembrane space7.42E-03
21GO:0042651: thylakoid membrane7.95E-03
22GO:0009654: photosystem II oxygen evolving complex7.95E-03
23GO:0009543: chloroplast thylakoid lumen8.81E-03
24GO:0009522: photosystem I1.26E-02
25GO:0009523: photosystem II1.33E-02
26GO:0019898: extrinsic component of membrane1.33E-02
27GO:0000139: Golgi membrane1.53E-02
28GO:0032580: Golgi cisterna membrane1.60E-02
29GO:0005778: peroxisomal membrane1.67E-02
30GO:0010319: stromule1.67E-02
31GO:0009579: thylakoid1.85E-02
32GO:0000325: plant-type vacuole2.42E-02
33GO:0031902: late endosome membrane2.93E-02
34GO:0005794: Golgi apparatus3.19E-02
35GO:0009506: plasmodesma3.82E-02
36GO:0016020: membrane4.87E-02
37GO:0009706: chloroplast inner membrane4.92E-02
Gene type



Gene DE type