co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G51980

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0017126: nucleologenesis	0.00E+00
2	GO:0080120: CAAX-box protein maturation	2.64E-05
3	GO:0071586: CAAX-box protein processing	2.64E-05
4	GO:0006422: aspartyl-tRNA aminoacylation	2.64E-05
5	GO:0030198: extracellular matrix organization	2.64E-05
6	GO:0006096: glycolytic process	3.54E-05
7	GO:0006542: glutamine biosynthetic process	2.39E-04
8	GO:0033320: UDP-D-xylose biosynthetic process	2.39E-04
9	GO:0030041: actin filament polymerization	3.07E-04
10	GO:0018279: protein N-linked glycosylation via asparagine	3.07E-04
11	GO:0045116: protein neddylation	3.07E-04
12	GO:0006099: tricarboxylic acid cycle	3.57E-04
13	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	3.78E-04
14	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	3.78E-04
15	GO:0042732: D-xylose metabolic process	3.78E-04
16	GO:0009423: chorismate biosynthetic process	4.53E-04
17	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	5.30E-04
18	GO:0042773: ATP synthesis coupled electron transport	5.30E-04
19	GO:0006102: isocitrate metabolic process	6.10E-04
20	GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	7.80E-04
21	GO:0009060: aerobic respiration	7.80E-04
22	GO:0006098: pentose-phosphate shunt	7.80E-04
23	GO:0009073: aromatic amino acid family biosynthetic process	1.05E-03
24	GO:0016485: protein processing	1.05E-03
25	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	1.25E-03
26	GO:0006094: gluconeogenesis	1.25E-03
27	GO:0010102: lateral root morphogenesis	1.25E-03
28	GO:0006511: ubiquitin-dependent protein catabolic process	1.31E-03
29	GO:0009225: nucleotide-sugar metabolic process	1.45E-03
30	GO:0034976: response to endoplasmic reticulum stress	1.56E-03
31	GO:0051302: regulation of cell division	1.78E-03
32	GO:0007131: reciprocal meiotic recombination	2.02E-03
33	GO:0030433: ubiquitin-dependent ERAD pathway	2.02E-03
34	GO:0010501: RNA secondary structure unwinding	2.52E-03
35	GO:0042631: cellular response to water deprivation	2.52E-03
36	GO:0071472: cellular response to salt stress	2.65E-03
37	GO:0030163: protein catabolic process	3.33E-03
38	GO:0010252: auxin homeostasis	3.47E-03
39	GO:0046686: response to cadmium ion	3.79E-03
40	GO:0042128: nitrate assimilation	4.22E-03
41	GO:0048767: root hair elongation	4.85E-03
42	GO:0009734: auxin-activated signaling pathway	5.35E-03
43	GO:0009853: photorespiration	5.52E-03
44	GO:0006631: fatty acid metabolic process	6.21E-03
45	GO:0000209: protein polyubiquitination	6.75E-03
46	GO:0009965: leaf morphogenesis	7.12E-03
47	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	7.50E-03
48	GO:0009664: plant-type cell wall organization	7.69E-03
49	GO:0006364: rRNA processing	8.08E-03
50	GO:0006457: protein folding	8.72E-03
51	GO:0009790: embryo development	1.35E-02
52	GO:0006979: response to oxidative stress	1.38E-02
53	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.65E-02
54	GO:0009826: unidimensional cell growth	2.02E-02
55	GO:0006970: response to osmotic stress	2.19E-02
56	GO:0016192: vesicle-mediated transport	2.51E-02
57	GO:0015979: photosynthesis	2.66E-02
58	GO:0045454: cell redox homeostasis	2.75E-02
59	GO:0032259: methylation	3.10E-02
60	GO:0009793: embryo development ending in seed dormancy	3.17E-02
61	GO:0006281: DNA repair	3.19E-02
62	GO:0008152: metabolic process	3.42E-02
63	GO:0016567: protein ubiquitination	4.16E-02
64	GO:0006508: proteolysis	4.20E-02
65	GO:0009735: response to cytokinin	4.51E-02

Rank	GO Term	Adjusted P value
1	GO:0005201: extracellular matrix structural constituent	0.00E+00
2	GO:0003856: 3-dehydroquinate synthase activity	0.00E+00
3	GO:0004815: aspartate-tRNA ligase activity	2.64E-05
4	GO:0004450: isocitrate dehydrogenase (NADP+) activity	6.72E-05
5	GO:0019781: NEDD8 activating enzyme activity	6.72E-05
6	GO:0004324: ferredoxin-NADP+ reductase activity	1.18E-04
7	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.76E-04
8	GO:0003995: acyl-CoA dehydrogenase activity	2.39E-04
9	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	2.39E-04
10	GO:0004222: metalloendopeptidase activity	2.97E-04
11	GO:0004356: glutamate-ammonia ligase activity	3.07E-04
12	GO:0008641: small protein activating enzyme activity	3.07E-04
13	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	3.07E-04
14	GO:0036402: proteasome-activating ATPase activity	3.78E-04
15	GO:0048040: UDP-glucuronate decarboxylase activity	3.78E-04
16	GO:0004332: fructose-bisphosphate aldolase activity	3.78E-04
17	GO:0070403: NAD+ binding	4.53E-04
18	GO:0031624: ubiquitin conjugating enzyme binding	1.35E-03
19	GO:0004175: endopeptidase activity	1.35E-03
20	GO:0017025: TBP-class protein binding	1.45E-03
21	GO:0051536: iron-sulfur cluster binding	1.67E-03
22	GO:0003954: NADH dehydrogenase activity	1.67E-03
23	GO:0003756: protein disulfide isomerase activity	2.26E-03
24	GO:0008137: NADH dehydrogenase (ubiquinone) activity	3.05E-03
25	GO:0016491: oxidoreductase activity	3.06E-03
26	GO:0004004: ATP-dependent RNA helicase activity	4.37E-03
27	GO:0050897: cobalt ion binding	5.18E-03
28	GO:0051539: 4 iron, 4 sulfur cluster binding	6.04E-03
29	GO:0051537: 2 iron, 2 sulfur cluster binding	6.94E-03
30	GO:0051287: NAD binding	7.50E-03
31	GO:0046872: metal ion binding	8.40E-03
32	GO:0005507: copper ion binding	9.60E-03
33	GO:0003779: actin binding	1.01E-02
34	GO:0051082: unfolded protein binding	1.03E-02
35	GO:0016746: transferase activity, transferring acyl groups	1.06E-02
36	GO:0008026: ATP-dependent helicase activity	1.08E-02
37	GO:0008168: methyltransferase activity	2.02E-02
38	GO:0000287: magnesium ion binding	2.05E-02
39	GO:0050660: flavin adenine dinucleotide binding	2.30E-02
40	GO:0061630: ubiquitin protein ligase activity	2.51E-02
41	GO:0009055: electron carrier activity	3.36E-02
42	GO:0005524: ATP binding	4.03E-02
43	GO:0016887: ATPase activity	4.36E-02
44	GO:0000166: nucleotide binding	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0005829: cytosol	1.74E-07
2	GO:0031595: nuclear proteasome complex	5.12E-06
3	GO:0005783: endoplasmic reticulum	5.80E-06
4	GO:0008541: proteasome regulatory particle, lid subcomplex	2.07E-05
5	GO:0005911: cell-cell junction	2.64E-05
6	GO:0000502: proteasome complex	2.71E-05
7	GO:0045254: pyruvate dehydrogenase complex	6.72E-05
8	GO:0005759: mitochondrial matrix	9.36E-05
9	GO:0008250: oligosaccharyltransferase complex	3.07E-04
10	GO:0031597: cytosolic proteasome complex	4.53E-04
11	GO:0045273: respiratory chain complex II	6.10E-04
12	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	6.10E-04
13	GO:0008540: proteasome regulatory particle, base subcomplex	8.68E-04
14	GO:0005750: mitochondrial respiratory chain complex III	1.35E-03
15	GO:0030176: integral component of endoplasmic reticulum membrane	1.45E-03
16	GO:0005758: mitochondrial intermembrane space	1.67E-03
17	GO:0045271: respiratory chain complex I	1.78E-03
18	GO:0005741: mitochondrial outer membrane	1.90E-03
19	GO:0005794: Golgi apparatus	2.07E-03
20	GO:0005774: vacuolar membrane	2.14E-03
21	GO:0032580: Golgi cisterna membrane	3.47E-03
22	GO:0005788: endoplasmic reticulum lumen	4.06E-03
23	GO:0005773: vacuole	4.10E-03
24	GO:0000151: ubiquitin ligase complex	4.69E-03
25	GO:0016020: membrane	5.94E-03
26	GO:0005737: cytoplasm	6.71E-03
27	GO:0031966: mitochondrial membrane	7.69E-03
28	GO:0005777: peroxisome	7.73E-03
29	GO:0005747: mitochondrial respiratory chain complex I	9.29E-03
30	GO:0005802: trans-Golgi network	1.08E-02
31	GO:0010287: plastoglobule	1.17E-02
32	GO:0005768: endosome	1.23E-02
33	GO:0009507: chloroplast	1.32E-02
34	GO:0005886: plasma membrane	1.77E-02
35	GO:0046658: anchored component of plasma membrane	1.86E-02
36	GO:0005789: endoplasmic reticulum membrane	2.09E-02
37	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	2.22E-02
38	GO:0005730: nucleolus	2.32E-02
39	GO:0005743: mitochondrial inner membrane	3.03E-02
40	GO:0022626: cytosolic ribosome	4.65E-02