Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G50040

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1901038: cyanidin 3-O-glucoside metabolic process0.00E+00
2GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)0.00E+00
3GO:0006971: hypotonic response0.00E+00
4GO:0006792: regulation of sulfur utilization0.00E+00
5GO:0010200: response to chitin1.54E-07
6GO:0010411: xyloglucan metabolic process6.18E-07
7GO:0042546: cell wall biogenesis3.37E-06
8GO:0009718: anthocyanin-containing compound biosynthetic process1.65E-05
9GO:0009751: response to salicylic acid7.03E-05
10GO:0030154: cell differentiation7.36E-05
11GO:0010583: response to cyclopentenone1.54E-04
12GO:0006355: regulation of transcription, DNA-templated1.76E-04
13GO:0050691: regulation of defense response to virus by host1.77E-04
14GO:0033481: galacturonate biosynthetic process1.77E-04
15GO:0055063: sulfate ion homeostasis1.77E-04
16GO:0046500: S-adenosylmethionine metabolic process1.77E-04
17GO:0009962: regulation of flavonoid biosynthetic process1.77E-04
18GO:2000029: regulation of proanthocyanidin biosynthetic process1.77E-04
19GO:2000693: positive regulation of seed maturation4.01E-04
20GO:0031542: positive regulation of anthocyanin biosynthetic process4.01E-04
21GO:0071497: cellular response to freezing4.01E-04
22GO:0071395: cellular response to jasmonic acid stimulus4.01E-04
23GO:0080168: abscisic acid transport6.55E-04
24GO:0019419: sulfate reduction6.55E-04
25GO:0010581: regulation of starch biosynthetic process6.55E-04
26GO:0005992: trehalose biosynthetic process6.94E-04
27GO:0006357: regulation of transcription from RNA polymerase II promoter7.54E-04
28GO:0031347: regulation of defense response8.04E-04
29GO:0009826: unidimensional cell growth8.53E-04
30GO:2000022: regulation of jasmonic acid mediated signaling pathway9.13E-04
31GO:1902358: sulfate transmembrane transport9.34E-04
32GO:0040007: growth9.92E-04
33GO:0019722: calcium-mediated signaling1.07E-03
34GO:0009723: response to ethylene1.12E-03
35GO:0046345: abscisic acid catabolic process1.24E-03
36GO:0000271: polysaccharide biosynthetic process1.25E-03
37GO:0009741: response to brassinosteroid1.35E-03
38GO:0045489: pectin biosynthetic process1.35E-03
39GO:0016131: brassinosteroid metabolic process1.57E-03
40GO:2000762: regulation of phenylpropanoid metabolic process1.57E-03
41GO:0010438: cellular response to sulfur starvation1.57E-03
42GO:0006544: glycine metabolic process1.57E-03
43GO:0071368: cellular response to cytokinin stimulus1.57E-03
44GO:0060918: auxin transport1.94E-03
45GO:1902456: regulation of stomatal opening1.94E-03
46GO:0047484: regulation of response to osmotic stress1.94E-03
47GO:0006563: L-serine metabolic process1.94E-03
48GO:0042732: D-xylose metabolic process1.94E-03
49GO:0009267: cellular response to starvation1.94E-03
50GO:0009828: plant-type cell wall loosening2.00E-03
51GO:0019760: glucosinolate metabolic process2.00E-03
52GO:0007267: cell-cell signaling2.12E-03
53GO:1901001: negative regulation of response to salt stress2.32E-03
54GO:0009753: response to jasmonic acid2.50E-03
55GO:0009788: negative regulation of abscisic acid-activated signaling pathway2.51E-03
56GO:0006351: transcription, DNA-templated2.60E-03
57GO:0051510: regulation of unidimensional cell growth2.74E-03
58GO:0050829: defense response to Gram-negative bacterium2.74E-03
59GO:0010439: regulation of glucosinolate biosynthetic process3.17E-03
60GO:2000070: regulation of response to water deprivation3.17E-03
61GO:0030162: regulation of proteolysis3.17E-03
62GO:0070413: trehalose metabolism in response to stress3.17E-03
63GO:0009813: flavonoid biosynthetic process3.25E-03
64GO:0009739: response to gibberellin3.27E-03
65GO:0044030: regulation of DNA methylation3.63E-03
66GO:2000031: regulation of salicylic acid mediated signaling pathway3.63E-03
67GO:0010099: regulation of photomorphogenesis3.63E-03
68GO:0051865: protein autoubiquitination4.10E-03
69GO:0019432: triglyceride biosynthetic process4.10E-03
70GO:0071555: cell wall organization4.32E-03
71GO:0009638: phototropism4.60E-03
72GO:0035999: tetrahydrofolate interconversion4.60E-03
73GO:0009738: abscisic acid-activated signaling pathway5.11E-03
74GO:0000103: sulfate assimilation5.11E-03
75GO:0043069: negative regulation of programmed cell death5.11E-03
76GO:0009733: response to auxin5.29E-03
77GO:1903507: negative regulation of nucleic acid-templated transcription5.65E-03
78GO:0000272: polysaccharide catabolic process5.65E-03
79GO:0010015: root morphogenesis5.65E-03
80GO:0000038: very long-chain fatty acid metabolic process5.65E-03
81GO:2000652: regulation of secondary cell wall biogenesis5.65E-03
82GO:0016925: protein sumoylation6.20E-03
83GO:0016024: CDP-diacylglycerol biosynthetic process6.20E-03
84GO:0030036: actin cytoskeleton organization6.78E-03
85GO:0018107: peptidyl-threonine phosphorylation6.78E-03
86GO:0009585: red, far-red light phototransduction6.78E-03
87GO:0046777: protein autophosphorylation7.06E-03
88GO:0010540: basipetal auxin transport7.37E-03
89GO:0048467: gynoecium development7.37E-03
90GO:0034605: cellular response to heat7.37E-03
91GO:0010143: cutin biosynthetic process7.37E-03
92GO:0002237: response to molecule of bacterial origin7.37E-03
93GO:0009969: xyloglucan biosynthetic process7.98E-03
94GO:0009225: nucleotide-sugar metabolic process7.98E-03
95GO:0005985: sucrose metabolic process7.98E-03
96GO:0045454: cell redox homeostasis8.16E-03
97GO:0006636: unsaturated fatty acid biosynthetic process8.61E-03
98GO:2000377: regulation of reactive oxygen species metabolic process9.26E-03
99GO:0006487: protein N-linked glycosylation9.26E-03
100GO:0019344: cysteine biosynthetic process9.26E-03
101GO:0019953: sexual reproduction9.92E-03
102GO:0010026: trichome differentiation9.92E-03
103GO:0016567: protein ubiquitination1.02E-02
104GO:0016998: cell wall macromolecule catabolic process1.06E-02
105GO:0010017: red or far-red light signaling pathway1.13E-02
106GO:0009411: response to UV1.20E-02
107GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.20E-02
108GO:0010214: seed coat development1.27E-02
109GO:0010118: stomatal movement1.43E-02
110GO:0048653: anther development1.43E-02
111GO:0009873: ethylene-activated signaling pathway1.47E-02
112GO:0009958: positive gravitropism1.50E-02
113GO:0010268: brassinosteroid homeostasis1.50E-02
114GO:0009414: response to water deprivation1.51E-02
115GO:0040008: regulation of growth1.60E-02
116GO:0009737: response to abscisic acid1.61E-02
117GO:0009791: post-embryonic development1.66E-02
118GO:0016132: brassinosteroid biosynthetic process1.75E-02
119GO:0048510: regulation of timing of transition from vegetative to reproductive phase1.75E-02
120GO:0002229: defense response to oomycetes1.75E-02
121GO:0009639: response to red or far red light2.00E-02
122GO:0016125: sterol metabolic process2.00E-02
123GO:0001666: response to hypoxia2.27E-02
124GO:0035556: intracellular signal transduction2.36E-02
125GO:0048573: photoperiodism, flowering2.55E-02
126GO:0016311: dephosphorylation2.64E-02
127GO:0048481: plant ovule development2.74E-02
128GO:0006970: response to osmotic stress2.80E-02
129GO:0009860: pollen tube growth2.80E-02
130GO:0048767: root hair elongation2.84E-02
131GO:0010218: response to far red light2.94E-02
132GO:0048527: lateral root development3.04E-02
133GO:0010119: regulation of stomatal movement3.04E-02
134GO:0048366: leaf development3.06E-02
135GO:0009867: jasmonic acid mediated signaling pathway3.24E-02
136GO:0016051: carbohydrate biosynthetic process3.24E-02
137GO:0009637: response to blue light3.24E-02
138GO:0042542: response to hydrogen peroxide3.78E-02
139GO:0010114: response to red light3.88E-02
140GO:0006855: drug transmembrane transport4.33E-02
141GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process4.45E-02
142GO:0009664: plant-type cell wall organization4.56E-02
143GO:0006629: lipid metabolic process4.73E-02
144GO:0009809: lignin biosynthetic process4.80E-02
145GO:0006486: protein glycosylation4.80E-02
RankGO TermAdjusted P value
1GO:0090411: brassinosteroid binding0.00E+00
2GO:0102580: cyanidin 3-O-glucoside 2-O''-xylosyltransferase activity0.00E+00
3GO:0047890: flavanone 4-reductase activity0.00E+00
4GO:0016711: flavonoid 3'-monooxygenase activity0.00E+00
5GO:0045552: dihydrokaempferol 4-reductase activity0.00E+00
6GO:0016762: xyloglucan:xyloglucosyl transferase activity5.90E-06
7GO:0016798: hydrolase activity, acting on glycosyl bonds1.83E-05
8GO:0003700: transcription factor activity, sequence-specific DNA binding3.22E-05
9GO:0043565: sequence-specific DNA binding3.33E-05
10GO:0035252: UDP-xylosyltransferase activity5.77E-05
11GO:0080132: fatty acid alpha-hydroxylase activity1.77E-04
12GO:0090440: abscisic acid transporter activity1.77E-04
13GO:0044212: transcription regulatory region DNA binding2.90E-04
14GO:0004805: trehalose-phosphatase activity2.95E-04
15GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting3.11E-04
16GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding3.80E-04
17GO:0009973: adenylyl-sulfate reductase activity4.01E-04
18GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity4.01E-04
19GO:0033741: adenylyl-sulfate reductase (glutathione) activity4.01E-04
20GO:0050736: O-malonyltransferase activity4.01E-04
21GO:0048531: beta-1,3-galactosyltransferase activity4.01E-04
22GO:0010295: (+)-abscisic acid 8'-hydroxylase activity6.55E-04
23GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity9.34E-04
24GO:0033843: xyloglucan 6-xylosyltransferase activity9.34E-04
25GO:0050378: UDP-glucuronate 4-epimerase activity1.24E-03
26GO:0004372: glycine hydroxymethyltransferase activity1.57E-03
27GO:0031386: protein tag1.57E-03
28GO:0010427: abscisic acid binding1.94E-03
29GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity1.94E-03
30GO:0004366: glycerol-3-phosphate O-acyltransferase activity1.94E-03
31GO:0016791: phosphatase activity2.00E-03
32GO:0016161: beta-amylase activity2.32E-03
33GO:0016621: cinnamoyl-CoA reductase activity2.74E-03
34GO:0008271: secondary active sulfate transmembrane transporter activity3.63E-03
35GO:0016757: transferase activity, transferring glycosyl groups4.35E-03
36GO:0004864: protein phosphatase inhibitor activity5.11E-03
37GO:0000976: transcription regulatory region sequence-specific DNA binding6.20E-03
38GO:0015116: sulfate transmembrane transporter activity6.20E-03
39GO:0046983: protein dimerization activity7.16E-03
40GO:0031625: ubiquitin protein ligase binding7.51E-03
41GO:0004842: ubiquitin-protein transferase activity7.60E-03
42GO:0003712: transcription cofactor activity7.98E-03
43GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds8.18E-03
44GO:0004672: protein kinase activity8.45E-03
45GO:0003714: transcription corepressor activity9.26E-03
46GO:0004674: protein serine/threonine kinase activity9.64E-03
47GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.13E-02
48GO:0016758: transferase activity, transferring hexosyl groups1.18E-02
49GO:0004402: histone acetyltransferase activity1.43E-02
50GO:0001085: RNA polymerase II transcription factor binding1.50E-02
51GO:0005506: iron ion binding1.52E-02
52GO:0050662: coenzyme binding1.58E-02
53GO:0003677: DNA binding1.63E-02
54GO:0004872: receptor activity1.66E-02
55GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor1.91E-02
56GO:0005200: structural constituent of cytoskeleton2.09E-02
57GO:0008375: acetylglucosaminyltransferase activity2.45E-02
58GO:0009931: calcium-dependent protein serine/threonine kinase activity2.45E-02
59GO:0004806: triglyceride lipase activity2.55E-02
60GO:0016740: transferase activity2.82E-02
61GO:0015238: drug transmembrane transporter activity2.84E-02
62GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding3.04E-02
63GO:0020037: heme binding3.07E-02
64GO:0019825: oxygen binding3.42E-02
65GO:0005516: calmodulin binding3.66E-02
66GO:0004871: signal transducer activity4.03E-02
67GO:0015293: symporter activity4.22E-02
68GO:0016298: lipase activity4.92E-02
RankGO TermAdjusted P value
1GO:0090568: nuclear transcriptional repressor complex0.00E+00
2GO:0048046: apoplast5.51E-04
3GO:0042406: extrinsic component of endoplasmic reticulum membrane6.55E-04
4GO:0031225: anchored component of membrane2.74E-03
5GO:0005615: extracellular space3.27E-03
6GO:0046658: anchored component of plasma membrane4.05E-03
7GO:0005794: Golgi apparatus6.17E-03
8GO:0009505: plant-type cell wall6.41E-03
9GO:0005770: late endosome1.50E-02
10GO:0005618: cell wall1.70E-02
11GO:0032580: Golgi cisterna membrane2.00E-02
12GO:0005667: transcription factor complex2.45E-02
13GO:0019005: SCF ubiquitin ligase complex2.74E-02
14GO:0031902: late endosome membrane3.67E-02
15GO:0005856: cytoskeleton4.22E-02
16GO:0005886: plasma membrane4.37E-02
17GO:0005576: extracellular region4.83E-02
Gene type



Gene DE type