Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G49720

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0071260: cellular response to mechanical stimulus0.00E+00
2GO:0042906: xanthine transport0.00E+00
3GO:0009877: nodulation0.00E+00
4GO:0030644: cellular chloride ion homeostasis0.00E+00
5GO:0043171: peptide catabolic process0.00E+00
6GO:0010219: regulation of vernalization response0.00E+00
7GO:0012502: induction of programmed cell death0.00E+00
8GO:0010378: temperature compensation of the circadian clock0.00E+00
9GO:0005997: xylulose metabolic process0.00E+00
10GO:1903508: positive regulation of nucleic acid-templated transcription0.00E+00
11GO:1903428: positive regulation of reactive oxygen species biosynthetic process0.00E+00
12GO:0071311: cellular response to acetate0.00E+00
13GO:0009768: photosynthesis, light harvesting in photosystem I2.20E-11
14GO:0018298: protein-chromophore linkage1.73E-10
15GO:0009416: response to light stimulus1.24E-07
16GO:0009637: response to blue light4.76E-07
17GO:0042542: response to hydrogen peroxide9.34E-07
18GO:0009644: response to high light intensity1.35E-06
19GO:0009409: response to cold2.43E-06
20GO:0007623: circadian rhythm3.01E-06
21GO:0009645: response to low light intensity stimulus5.18E-06
22GO:0009769: photosynthesis, light harvesting in photosystem II5.18E-06
23GO:0010218: response to far red light7.39E-06
24GO:0010600: regulation of auxin biosynthetic process5.85E-05
25GO:0000380: alternative mRNA splicing, via spliceosome9.24E-05
26GO:0043097: pyrimidine nucleoside salvage9.24E-05
27GO:0009737: response to abscisic acid9.26E-05
28GO:0009817: defense response to fungus, incompatible interaction9.44E-05
29GO:0006206: pyrimidine nucleobase metabolic process1.34E-04
30GO:0010244: response to low fluence blue light stimulus by blue low-fluence system1.83E-04
31GO:0010114: response to red light2.25E-04
32GO:0015979: photosynthesis2.34E-04
33GO:0008643: carbohydrate transport2.56E-04
34GO:0080065: 4-alpha-methyl-delta7-sterol oxidation2.99E-04
35GO:0010496: intercellular transport2.99E-04
36GO:0010362: negative regulation of anion channel activity by blue light2.99E-04
37GO:0015812: gamma-aminobutyric acid transport2.99E-04
38GO:0032958: inositol phosphate biosynthetic process2.99E-04
39GO:0006369: termination of RNA polymerase II transcription2.99E-04
40GO:0034472: snRNA 3'-end processing2.99E-04
41GO:0010928: regulation of auxin mediated signaling pathway3.02E-04
42GO:0009414: response to water deprivation4.47E-04
43GO:0010286: heat acclimation5.37E-04
44GO:0009970: cellular response to sulfate starvation6.16E-04
45GO:0006995: cellular response to nitrogen starvation6.16E-04
46GO:0006883: cellular sodium ion homeostasis6.55E-04
47GO:0090057: root radial pattern formation6.55E-04
48GO:0048833: specification of floral organ number6.55E-04
49GO:0015857: uracil transport6.55E-04
50GO:1902884: positive regulation of response to oxidative stress6.55E-04
51GO:0030259: lipid glycosylation6.55E-04
52GO:0051170: nuclear import6.55E-04
53GO:0030003: cellular cation homeostasis6.55E-04
54GO:0015914: phospholipid transport6.55E-04
55GO:0015720: allantoin transport6.55E-04
56GO:0010155: regulation of proton transport6.55E-04
57GO:0006816: calcium ion transport7.11E-04
58GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process9.19E-04
59GO:0000160: phosphorelay signal transduction system9.24E-04
60GO:0010119: regulation of stomatal movement1.04E-03
61GO:1902448: positive regulation of shade avoidance1.06E-03
62GO:0042344: indole glucosinolate catabolic process1.06E-03
63GO:0071230: cellular response to amino acid stimulus1.06E-03
64GO:0016255: attachment of GPI anchor to protein1.06E-03
65GO:1901562: response to paraquat1.06E-03
66GO:0006598: polyamine catabolic process1.06E-03
67GO:0071705: nitrogen compound transport1.06E-03
68GO:0030029: actin filament-based process1.06E-03
69GO:0035556: intracellular signal transduction1.42E-03
70GO:0006020: inositol metabolic process1.52E-03
71GO:1901000: regulation of response to salt stress1.52E-03
72GO:0010601: positive regulation of auxin biosynthetic process1.52E-03
73GO:0044211: CTP salvage1.52E-03
74GO:0031936: negative regulation of chromatin silencing1.52E-03
75GO:0015749: monosaccharide transport1.52E-03
76GO:1901332: negative regulation of lateral root development1.52E-03
77GO:0030100: regulation of endocytosis1.52E-03
78GO:0010228: vegetative to reproductive phase transition of meristem1.55E-03
79GO:0006874: cellular calcium ion homeostasis1.56E-03
80GO:0048511: rhythmic process1.72E-03
81GO:0010017: red or far-red light signaling pathway1.88E-03
82GO:0015743: malate transport2.04E-03
83GO:0048442: sepal development2.04E-03
84GO:0009765: photosynthesis, light harvesting2.04E-03
85GO:2000306: positive regulation of photomorphogenesis2.04E-03
86GO:1901002: positive regulation of response to salt stress2.04E-03
87GO:0030104: water homeostasis2.04E-03
88GO:1901409: positive regulation of phosphorylation of RNA polymerase II C-terminal domain2.04E-03
89GO:0010508: positive regulation of autophagy2.04E-03
90GO:0044206: UMP salvage2.04E-03
91GO:0006646: phosphatidylethanolamine biosynthetic process2.04E-03
92GO:0009585: red, far-red light phototransduction2.35E-03
93GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.41E-03
94GO:0048578: positive regulation of long-day photoperiodism, flowering2.61E-03
95GO:0009904: chloroplast accumulation movement2.61E-03
96GO:0016926: protein desumoylation2.61E-03
97GO:0006656: phosphatidylcholine biosynthetic process2.61E-03
98GO:0006461: protein complex assembly2.61E-03
99GO:0006814: sodium ion transport3.02E-03
100GO:0042732: D-xylose metabolic process3.22E-03
101GO:0031053: primary miRNA processing3.22E-03
102GO:1900425: negative regulation of defense response to bacterium3.22E-03
103GO:0045962: positive regulation of development, heterochronic3.22E-03
104GO:0009635: response to herbicide3.22E-03
105GO:0000741: karyogamy3.22E-03
106GO:0009651: response to salt stress3.24E-03
107GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity3.87E-03
108GO:0071470: cellular response to osmotic stress3.87E-03
109GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity3.87E-03
110GO:0045926: negative regulation of growth3.87E-03
111GO:0009903: chloroplast avoidance movement3.87E-03
112GO:0009861: jasmonic acid and ethylene-dependent systemic resistance3.87E-03
113GO:0080167: response to karrikin3.91E-03
114GO:0009735: response to cytokinin4.04E-03
115GO:0098869: cellular oxidant detoxification4.57E-03
116GO:0048437: floral organ development4.57E-03
117GO:0080111: DNA demethylation4.57E-03
118GO:0010038: response to metal ion4.57E-03
119GO:0010044: response to aluminum ion4.57E-03
120GO:0010161: red light signaling pathway4.57E-03
121GO:0016126: sterol biosynthetic process5.00E-03
122GO:0010029: regulation of seed germination5.29E-03
123GO:0009415: response to water5.30E-03
124GO:0009819: drought recovery5.30E-03
125GO:0010078: maintenance of root meristem identity5.30E-03
126GO:0009704: de-etiolation5.30E-03
127GO:0032508: DNA duplex unwinding5.30E-03
128GO:0006506: GPI anchor biosynthetic process5.30E-03
129GO:0010099: regulation of photomorphogenesis6.08E-03
130GO:0009827: plant-type cell wall modification6.08E-03
131GO:0001510: RNA methylation6.08E-03
132GO:0006098: pentose-phosphate shunt6.89E-03
133GO:0090333: regulation of stomatal closure6.89E-03
134GO:0046916: cellular transition metal ion homeostasis6.89E-03
135GO:0009408: response to heat7.07E-03
136GO:0006811: ion transport7.20E-03
137GO:0009631: cold acclimation7.55E-03
138GO:0010043: response to zinc ion7.55E-03
139GO:0009638: phototropism7.74E-03
140GO:0030042: actin filament depolymerization7.74E-03
141GO:0048354: mucilage biosynthetic process involved in seed coat development7.74E-03
142GO:0005982: starch metabolic process7.74E-03
143GO:0045087: innate immune response8.28E-03
144GO:0055062: phosphate ion homeostasis8.62E-03
145GO:0010162: seed dormancy process8.62E-03
146GO:0048441: petal development8.62E-03
147GO:0009641: shade avoidance8.62E-03
148GO:0010468: regulation of gene expression9.24E-03
149GO:0009682: induced systemic resistance9.55E-03
150GO:0052544: defense response by callose deposition in cell wall9.55E-03
151GO:0016925: protein sumoylation1.05E-02
152GO:0009640: photomorphogenesis1.07E-02
153GO:0000209: protein polyubiquitination1.11E-02
154GO:0009785: blue light signaling pathway1.15E-02
155GO:0050826: response to freezing1.15E-02
156GO:0009718: anthocyanin-containing compound biosynthetic process1.15E-02
157GO:0005975: carbohydrate metabolic process1.16E-02
158GO:0048440: carpel development1.25E-02
159GO:0007015: actin filament organization1.25E-02
160GO:0009266: response to temperature stimulus1.25E-02
161GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process1.30E-02
162GO:0019853: L-ascorbic acid biosynthetic process1.36E-02
163GO:0090351: seedling development1.36E-02
164GO:0006970: response to osmotic stress1.41E-02
165GO:0009908: flower development1.45E-02
166GO:0006406: mRNA export from nucleus1.58E-02
167GO:0009738: abscisic acid-activated signaling pathway1.60E-02
168GO:0016575: histone deacetylation1.69E-02
169GO:0009695: jasmonic acid biosynthetic process1.69E-02
170GO:0010431: seed maturation1.81E-02
171GO:0009269: response to desiccation1.81E-02
172GO:0003333: amino acid transmembrane transport1.81E-02
173GO:0019748: secondary metabolic process1.93E-02
174GO:0009693: ethylene biosynthetic process2.05E-02
175GO:0071215: cellular response to abscisic acid stimulus2.05E-02
176GO:0006012: galactose metabolic process2.05E-02
177GO:0007165: signal transduction2.13E-02
178GO:0045892: negative regulation of transcription, DNA-templated2.17E-02
179GO:0010214: seed coat development2.18E-02
180GO:0048443: stamen development2.18E-02
181GO:0019722: calcium-mediated signaling2.18E-02
182GO:0070417: cellular response to cold2.31E-02
183GO:0055085: transmembrane transport2.40E-02
184GO:0000226: microtubule cytoskeleton organization2.44E-02
185GO:0034220: ion transmembrane transport2.44E-02
186GO:0010501: RNA secondary structure unwinding2.44E-02
187GO:0010197: polar nucleus fusion2.57E-02
188GO:0046323: glucose import2.57E-02
189GO:0042752: regulation of circadian rhythm2.71E-02
190GO:0009058: biosynthetic process2.72E-02
191GO:0009845: seed germination2.80E-02
192GO:0008654: phospholipid biosynthetic process2.85E-02
193GO:0009556: microsporogenesis2.85E-02
194GO:0042744: hydrogen peroxide catabolic process2.94E-02
195GO:0000302: response to reactive oxygen species2.99E-02
196GO:0048510: regulation of timing of transition from vegetative to reproductive phase2.99E-02
197GO:0006635: fatty acid beta-oxidation2.99E-02
198GO:1901657: glycosyl compound metabolic process3.28E-02
199GO:0016036: cellular response to phosphate starvation3.32E-02
200GO:0046686: response to cadmium ion3.40E-02
201GO:0016125: sterol metabolic process3.42E-02
202GO:0019760: glucosinolate metabolic process3.42E-02
203GO:0006914: autophagy3.42E-02
204GO:0009911: positive regulation of flower development3.88E-02
205GO:0006355: regulation of transcription, DNA-templated3.94E-02
206GO:0009739: response to gibberellin3.98E-02
207GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process3.98E-02
208GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.04E-02
209GO:0009617: response to bacterium4.24E-02
210GO:0016567: protein ubiquitination4.28E-02
211GO:0015995: chlorophyll biosynthetic process4.36E-02
212GO:0048573: photoperiodism, flowering4.36E-02
213GO:0006888: ER to Golgi vesicle-mediated transport4.36E-02
214GO:0009813: flavonoid biosynthetic process4.85E-02
RankGO TermAdjusted P value
1GO:0080083: beta-gentiobiose beta-glucosidase activity0.00E+00
2GO:0005272: sodium channel activity0.00E+00
3GO:0030504: inorganic diphosphate transmembrane transporter activity0.00E+00
4GO:0042907: xanthine transmembrane transporter activity0.00E+00
5GO:0010349: L-galactose dehydrogenase activity0.00E+00
6GO:0009045: xylose isomerase activity0.00E+00
7GO:0080082: esculin beta-glucosidase activity0.00E+00
8GO:0005358: high-affinity hydrogen:glucose symporter activity0.00E+00
9GO:0004567: beta-mannosidase activity0.00E+00
10GO:0015276: ligand-gated ion channel activity0.00E+00
11GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity0.00E+00
12GO:0016428: tRNA (cytosine-5-)-methyltransferase activity0.00E+00
13GO:0047668: amygdalin beta-glucosidase activity0.00E+00
14GO:0019912: cyclin-dependent protein kinase activating kinase activity0.00E+00
15GO:0031409: pigment binding9.28E-12
16GO:0016168: chlorophyll binding3.02E-09
17GO:0004096: catalase activity1.46E-05
18GO:0005253: anion channel activity5.85E-05
19GO:0004849: uridine kinase activity1.83E-04
20GO:0009679: hexose:proton symporter activity2.99E-04
21GO:0000829: inositol heptakisphosphate kinase activity2.99E-04
22GO:0010013: N-1-naphthylphthalamic acid binding2.99E-04
23GO:0080079: cellobiose glucosidase activity2.99E-04
24GO:0102203: brassicasterol glucosyltransferase activity2.99E-04
25GO:0102202: soladodine glucosyltransferase activity2.99E-04
26GO:0008692: 3-hydroxybutyryl-CoA epimerase activity2.99E-04
27GO:0004856: xylulokinase activity2.99E-04
28GO:0046870: cadmium ion binding2.99E-04
29GO:0070006: metalloaminopeptidase activity2.99E-04
30GO:0008066: glutamate receptor activity2.99E-04
31GO:0015185: gamma-aminobutyric acid transmembrane transporter activity2.99E-04
32GO:0000828: inositol hexakisphosphate kinase activity2.99E-04
33GO:0033857: diphosphoinositol-pentakisphosphate kinase activity2.99E-04
34GO:0016906: sterol 3-beta-glucosyltransferase activity2.99E-04
35GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity6.55E-04
36GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity6.55E-04
37GO:0015180: L-alanine transmembrane transporter activity6.55E-04
38GO:0001047: core promoter binding6.55E-04
39GO:0032791: lead ion binding6.55E-04
40GO:0005274: allantoin uptake transmembrane transporter activity6.55E-04
41GO:0004609: phosphatidylserine decarboxylase activity6.55E-04
42GO:0047216: inositol 3-alpha-galactosyltransferase activity6.55E-04
43GO:0005262: calcium channel activity9.19E-04
44GO:0031624: ubiquitin conjugating enzyme binding1.03E-03
45GO:0005515: protein binding1.04E-03
46GO:0019948: SUMO activating enzyme activity1.06E-03
47GO:0017150: tRNA dihydrouridine synthase activity1.06E-03
48GO:0046592: polyamine oxidase activity1.06E-03
49GO:0004970: ionotropic glutamate receptor activity1.15E-03
50GO:0005217: intracellular ligand-gated ion channel activity1.15E-03
51GO:0015189: L-lysine transmembrane transporter activity1.52E-03
52GO:0000254: C-4 methylsterol oxidase activity1.52E-03
53GO:0015181: arginine transmembrane transporter activity1.52E-03
54GO:0009882: blue light photoreceptor activity1.52E-03
55GO:0004165: dodecenoyl-CoA delta-isomerase activity1.52E-03
56GO:0004300: enoyl-CoA hydratase activity1.52E-03
57GO:0004707: MAP kinase activity1.72E-03
58GO:0004845: uracil phosphoribosyltransferase activity2.04E-03
59GO:0015210: uracil transmembrane transporter activity2.04E-03
60GO:0008526: phosphatidylinositol transporter activity2.04E-03
61GO:0005313: L-glutamate transmembrane transporter activity2.04E-03
62GO:0042277: peptide binding2.04E-03
63GO:0015145: monosaccharide transmembrane transporter activity2.61E-03
64GO:0045300: acyl-[acyl-carrier-protein] desaturase activity2.61E-03
65GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen2.61E-03
66GO:0016773: phosphotransferase activity, alcohol group as acceptor2.61E-03
67GO:0016929: SUMO-specific protease activity2.61E-03
68GO:0046872: metal ion binding2.70E-03
69GO:0004629: phospholipase C activity3.22E-03
70GO:0019137: thioglucosidase activity3.22E-03
71GO:0015562: efflux transmembrane transporter activity3.22E-03
72GO:0000293: ferric-chelate reductase activity3.22E-03
73GO:0005247: voltage-gated chloride channel activity3.22E-03
74GO:2001070: starch binding3.22E-03
75GO:0004435: phosphatidylinositol phospholipase C activity3.87E-03
76GO:0005261: cation channel activity3.87E-03
77GO:0000156: phosphorelay response regulator activity3.94E-03
78GO:0061630: ubiquitin protein ligase activity4.23E-03
79GO:0009881: photoreceptor activity4.57E-03
80GO:0015140: malate transmembrane transporter activity4.57E-03
81GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen5.06E-03
82GO:0004525: ribonuclease III activity5.30E-03
83GO:0004033: aldo-keto reductase (NADP) activity5.30E-03
84GO:0102483: scopolin beta-glucosidase activity5.89E-03
85GO:0005267: potassium channel activity6.08E-03
86GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)6.08E-03
87GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity6.08E-03
88GO:0001104: RNA polymerase II transcription cofactor activity6.08E-03
89GO:0015144: carbohydrate transmembrane transporter activity6.15E-03
90GO:0000989: transcription factor activity, transcription factor binding6.89E-03
91GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity6.89E-03
92GO:0005351: sugar:proton symporter activity7.16E-03
93GO:0004693: cyclin-dependent protein serine/threonine kinase activity7.20E-03
94GO:0050897: cobalt ion binding7.55E-03
95GO:0008422: beta-glucosidase activity9.05E-03
96GO:0047372: acylglycerol lipase activity9.55E-03
97GO:0004177: aminopeptidase activity9.55E-03
98GO:0004565: beta-galactosidase activity1.15E-02
99GO:0005315: inorganic phosphate transmembrane transporter activity1.15E-02
100GO:0000155: phosphorelay sensor kinase activity1.15E-02
101GO:0004175: endopeptidase activity1.25E-02
102GO:0008131: primary amine oxidase activity1.25E-02
103GO:0003712: transcription cofactor activity1.36E-02
104GO:0004407: histone deacetylase activity1.58E-02
105GO:0051087: chaperone binding1.69E-02
106GO:0008324: cation transmembrane transporter activity1.69E-02
107GO:0004497: monooxygenase activity1.69E-02
108GO:0019706: protein-cysteine S-palmitoyltransferase activity1.81E-02
109GO:0005215: transporter activity1.91E-02
110GO:0008270: zinc ion binding1.95E-02
111GO:0022891: substrate-specific transmembrane transporter activity2.05E-02
112GO:0008514: organic anion transmembrane transporter activity2.18E-02
113GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity2.57E-02
114GO:0010181: FMN binding2.71E-02
115GO:0004672: protein kinase activity3.08E-02
116GO:0015297: antiporter activity3.40E-02
117GO:0020037: heme binding3.47E-02
118GO:0005200: structural constituent of cytoskeleton3.58E-02
119GO:0016301: kinase activity4.22E-02
120GO:0005506: iron ion binding4.63E-02
RankGO TermAdjusted P value
1GO:0030076: light-harvesting complex5.56E-10
2GO:0009522: photosystem I1.71E-08
3GO:0010287: plastoglobule4.36E-08
4GO:0009523: photosystem II8.66E-07
5GO:0016021: integral component of membrane6.84E-06
6GO:0009941: chloroplast envelope4.40E-05
7GO:0009898: cytoplasmic side of plasma membrane5.85E-05
8GO:0005777: peroxisome1.02E-04
9GO:0009579: thylakoid1.15E-04
10GO:0009534: chloroplast thylakoid1.18E-04
11GO:0043036: starch grain6.55E-04
12GO:0042765: GPI-anchor transamidase complex1.06E-03
13GO:0042651: thylakoid membrane1.56E-03
14GO:0010445: nuclear dicing body2.04E-03
15GO:0032586: protein storage vacuole membrane2.04E-03
16GO:0009517: PSII associated light-harvesting complex II2.04E-03
17GO:0016607: nuclear speck3.03E-03
18GO:0005798: Golgi-associated vesicle3.22E-03
19GO:0070847: core mediator complex3.22E-03
20GO:0005851: eukaryotic translation initiation factor 2B complex3.22E-03
21GO:0030127: COPII vesicle coat3.22E-03
22GO:0034707: chloride channel complex3.22E-03
23GO:0009535: chloroplast thylakoid membrane3.28E-03
24GO:0016020: membrane3.59E-03
25GO:0009986: cell surface4.57E-03
26GO:0000307: cyclin-dependent protein kinase holoenzyme complex6.08E-03
27GO:0000326: protein storage vacuole6.08E-03
28GO:0000151: ubiquitin ligase complex6.53E-03
29GO:0031090: organelle membrane6.89E-03
30GO:0010494: cytoplasmic stress granule6.89E-03
31GO:0005773: vacuole1.03E-02
32GO:0005938: cell cortex1.15E-02
33GO:0005618: cell wall1.24E-02
34GO:0031966: mitochondrial membrane1.35E-02
35GO:0005769: early endosome1.47E-02
36GO:0005783: endoplasmic reticulum2.01E-02
37GO:0015629: actin cytoskeleton2.05E-02
38GO:0009506: plasmodesma2.26E-02
39GO:0031965: nuclear membrane2.85E-02
40GO:0005886: plasma membrane2.92E-02
41GO:0016592: mediator complex3.13E-02
42GO:0000932: P-body3.88E-02
43GO:0005622: intracellular3.92E-02
44GO:0005634: nucleus4.16E-02
Gene type



Gene DE type