Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G49560

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090279: regulation of calcium ion import0.00E+00
2GO:0071474: cellular hyperosmotic response0.00E+00
3GO:0070584: mitochondrion morphogenesis0.00E+00
4GO:1905421: regulation of plant organ morphogenesis0.00E+00
5GO:0030155: regulation of cell adhesion0.00E+00
6GO:0009768: photosynthesis, light harvesting in photosystem I3.92E-13
7GO:0015979: photosynthesis1.29E-10
8GO:0018298: protein-chromophore linkage4.53E-07
9GO:0009769: photosynthesis, light harvesting in photosystem II1.25E-05
10GO:0000025: maltose catabolic process4.60E-05
11GO:0005983: starch catabolic process5.65E-05
12GO:1901679: nucleotide transmembrane transport1.13E-04
13GO:0051262: protein tetramerization1.13E-04
14GO:0048281: inflorescence morphogenesis1.95E-04
15GO:0006598: polyamine catabolic process1.95E-04
16GO:0080121: AMP transport1.95E-04
17GO:0031936: negative regulation of chromatin silencing2.85E-04
18GO:0050482: arachidonic acid secretion2.85E-04
19GO:0010148: transpiration2.85E-04
20GO:0009765: photosynthesis, light harvesting3.84E-04
21GO:0010600: regulation of auxin biosynthetic process3.84E-04
22GO:0015867: ATP transport3.84E-04
23GO:0010218: response to far red light5.92E-04
24GO:0033365: protein localization to organelle5.98E-04
25GO:0009635: response to herbicide5.98E-04
26GO:0015866: ADP transport5.98E-04
27GO:0035435: phosphate ion transmembrane transport5.98E-04
28GO:0009637: response to blue light6.76E-04
29GO:0098655: cation transmembrane transport7.13E-04
30GO:0010244: response to low fluence blue light stimulus by blue low-fluence system7.13E-04
31GO:0006839: mitochondrial transport7.66E-04
32GO:0070370: cellular heat acclimation8.33E-04
33GO:0009645: response to low light intensity stimulus8.33E-04
34GO:0010103: stomatal complex morphogenesis8.33E-04
35GO:0010161: red light signaling pathway8.33E-04
36GO:0010196: nonphotochemical quenching8.33E-04
37GO:0080111: DNA demethylation8.33E-04
38GO:0010114: response to red light8.61E-04
39GO:0009644: response to high light intensity9.27E-04
40GO:0009704: de-etiolation9.57E-04
41GO:0006644: phospholipid metabolic process9.57E-04
42GO:0010928: regulation of auxin mediated signaling pathway9.57E-04
43GO:0006353: DNA-templated transcription, termination9.57E-04
44GO:0001558: regulation of cell growth1.09E-03
45GO:0007186: G-protein coupled receptor signaling pathway1.09E-03
46GO:0098656: anion transmembrane transport1.22E-03
47GO:1900865: chloroplast RNA modification1.36E-03
48GO:0018119: peptidyl-cysteine S-nitrosylation1.66E-03
49GO:0006006: glucose metabolic process1.98E-03
50GO:0009767: photosynthetic electron transport chain1.98E-03
51GO:0009416: response to light stimulus2.18E-03
52GO:0009944: polarity specification of adaxial/abaxial axis2.67E-03
53GO:0051302: regulation of cell division2.85E-03
54GO:0006874: cellular calcium ion homeostasis2.85E-03
55GO:0061077: chaperone-mediated protein folding3.04E-03
56GO:0009269: response to desiccation3.04E-03
57GO:0010017: red or far-red light signaling pathway3.23E-03
58GO:0001944: vasculature development3.43E-03
59GO:0009686: gibberellin biosynthetic process3.43E-03
60GO:0007018: microtubule-based movement4.47E-03
61GO:0048510: regulation of timing of transition from vegetative to reproductive phase4.91E-03
62GO:1901657: glycosyl compound metabolic process5.37E-03
63GO:0010286: heat acclimation5.84E-03
64GO:0016126: sterol biosynthetic process6.32E-03
65GO:0010029: regulation of seed germination6.57E-03
66GO:0015995: chlorophyll biosynthetic process7.08E-03
67GO:0032259: methylation7.36E-03
68GO:0009409: response to cold7.81E-03
69GO:0006811: ion transport8.14E-03
70GO:0010119: regulation of stomatal movement8.41E-03
71GO:0051707: response to other organism1.07E-02
72GO:0009965: leaf morphogenesis1.16E-02
73GO:0009735: response to cytokinin1.25E-02
74GO:0009664: plant-type cell wall organization1.26E-02
75GO:0042538: hyperosmotic salinity response1.26E-02
76GO:0006486: protein glycosylation1.32E-02
77GO:0009585: red, far-red light phototransduction1.32E-02
78GO:0043086: negative regulation of catalytic activity1.49E-02
79GO:0009740: gibberellic acid mediated signaling pathway1.63E-02
80GO:0055085: transmembrane transport1.74E-02
81GO:0009845: seed germination2.10E-02
82GO:0007623: circadian rhythm2.50E-02
83GO:0045490: pectin catabolic process2.50E-02
84GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process2.71E-02
85GO:0009414: response to water deprivation2.71E-02
86GO:0008380: RNA splicing2.84E-02
87GO:0045944: positive regulation of transcription from RNA polymerase II promoter3.23E-02
88GO:0006970: response to osmotic stress3.60E-02
89GO:0009723: response to ethylene3.79E-02
90GO:0080167: response to karrikin3.98E-02
91GO:0006810: transport4.06E-02
92GO:0010200: response to chitin4.08E-02
93GO:0005975: carbohydrate metabolic process4.20E-02
RankGO TermAdjusted P value
1GO:0009899: ent-kaurene synthase activity0.00E+00
2GO:0090711: FMN hydrolase activity0.00E+00
3GO:0031409: pigment binding4.77E-11
4GO:0016168: chlorophyll binding3.17E-09
5GO:0004134: 4-alpha-glucanotransferase activity4.60E-05
6GO:0005227: calcium activated cation channel activity4.60E-05
7GO:0016630: protochlorophyllide reductase activity1.13E-04
8GO:0008963: phospho-N-acetylmuramoyl-pentapeptide-transferase activity1.13E-04
9GO:0046592: polyamine oxidase activity1.95E-04
10GO:0042277: peptide binding3.84E-04
11GO:0004506: squalene monooxygenase activity3.84E-04
12GO:0019199: transmembrane receptor protein kinase activity3.84E-04
13GO:0004930: G-protein coupled receptor activity3.84E-04
14GO:0004623: phospholipase A2 activity4.88E-04
15GO:0080122: AMP transmembrane transporter activity4.88E-04
16GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity5.38E-04
17GO:0004556: alpha-amylase activity5.98E-04
18GO:0005347: ATP transmembrane transporter activity7.13E-04
19GO:0015217: ADP transmembrane transporter activity7.13E-04
20GO:0005261: cation channel activity7.13E-04
21GO:0005509: calcium ion binding8.66E-04
22GO:0004564: beta-fructofuranosidase activity9.57E-04
23GO:0004575: sucrose alpha-glucosidase activity1.36E-03
24GO:0044183: protein binding involved in protein folding1.66E-03
25GO:0015114: phosphate ion transmembrane transporter activity1.98E-03
26GO:0004565: beta-galactosidase activity1.98E-03
27GO:0015266: protein channel activity1.98E-03
28GO:0008131: primary amine oxidase activity2.14E-03
29GO:0004970: ionotropic glutamate receptor activity2.31E-03
30GO:0005217: intracellular ligand-gated ion channel activity2.31E-03
31GO:0005216: ion channel activity2.85E-03
32GO:0030570: pectate lyase activity3.43E-03
33GO:0008536: Ran GTPase binding4.25E-03
34GO:0003682: chromatin binding4.45E-03
35GO:0019901: protein kinase binding4.68E-03
36GO:0102483: scopolin beta-glucosidase activity7.08E-03
37GO:0008757: S-adenosylmethionine-dependent methyltransferase activity7.34E-03
38GO:0008422: beta-glucosidase activity9.53E-03
39GO:0042393: histone binding9.82E-03
40GO:0043621: protein self-association1.13E-02
41GO:0005198: structural molecule activity1.16E-02
42GO:0016887: ATPase activity1.19E-02
43GO:0003777: microtubule motor activity1.42E-02
44GO:0016829: lyase activity2.10E-02
45GO:0004252: serine-type endopeptidase activity2.14E-02
46GO:0046910: pectinesterase inhibitor activity2.38E-02
47GO:0008017: microtubule binding2.59E-02
48GO:0008168: methyltransferase activity3.32E-02
49GO:0000287: magnesium ion binding3.37E-02
50GO:0050660: flavin adenine dinucleotide binding3.79E-02
51GO:0061630: ubiquitin protein ligase activity4.13E-02
RankGO TermAdjusted P value
1GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
2GO:0009534: chloroplast thylakoid2.59E-13
3GO:0009579: thylakoid2.81E-10
4GO:0009535: chloroplast thylakoid membrane3.20E-10
5GO:0009522: photosystem I6.26E-10
6GO:0010287: plastoglobule4.36E-09
7GO:0009507: chloroplast6.03E-08
8GO:0030076: light-harvesting complex1.10E-06
9GO:0009941: chloroplast envelope2.19E-06
10GO:0009523: photosystem II7.22E-06
11GO:0009538: photosystem I reaction center1.67E-05
12GO:0009783: photosystem II antenna complex4.60E-05
13GO:0009517: PSII associated light-harvesting complex II3.84E-04
14GO:0009501: amyloplast9.57E-04
15GO:0005743: mitochondrial inner membrane9.77E-04
16GO:0009508: plastid chromosome1.98E-03
17GO:0030095: chloroplast photosystem II2.14E-03
18GO:0042651: thylakoid membrane2.85E-03
19GO:0009654: photosystem II oxygen evolving complex2.85E-03
20GO:0031410: cytoplasmic vesicle3.23E-03
21GO:0005744: mitochondrial inner membrane presequence translocase complex3.63E-03
22GO:0005871: kinesin complex3.83E-03
23GO:0019898: extrinsic component of membrane4.68E-03
24GO:0016021: integral component of membrane5.27E-03
25GO:0009295: nucleoid5.84E-03
26GO:0009707: chloroplast outer membrane7.60E-03
27GO:0031977: thylakoid lumen1.01E-02
28GO:0031966: mitochondrial membrane1.26E-02
29GO:0005777: peroxisome1.57E-02
30GO:0009543: chloroplast thylakoid lumen1.99E-02
31GO:0016020: membrane2.83E-02
32GO:0005874: microtubule3.88E-02
Gene type



Gene DE type