co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G49410

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0072321: chaperone-mediated protein transport	0.00E+00
2	GO:0071433: cell wall repair	0.00E+00
3	GO:1904874: positive regulation of telomerase RNA localization to Cajal body	0.00E+00
4	GO:0071731: response to nitric oxide	0.00E+00
5	GO:0006412: translation	1.07E-22
6	GO:0006457: protein folding	4.19E-13
7	GO:0042254: ribosome biogenesis	1.04E-11
8	GO:0046686: response to cadmium ion	7.41E-11
9	GO:0006626: protein targeting to mitochondrion	1.58E-08
10	GO:0009651: response to salt stress	6.81E-08
11	GO:0007005: mitochondrion organization	9.40E-08
12	GO:0002181: cytoplasmic translation	1.12E-06
13	GO:0009408: response to heat	2.42E-06
14	GO:0051131: chaperone-mediated protein complex assembly	2.69E-06
15	GO:0000027: ribosomal large subunit assembly	4.61E-06
16	GO:0006407: rRNA export from nucleus	7.23E-05
17	GO:0031120: snRNA pseudouridine synthesis	7.23E-05
18	GO:0031118: rRNA pseudouridine synthesis	7.23E-05
19	GO:0000494: box C/D snoRNA 3'-end processing	7.23E-05
20	GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	7.23E-05
21	GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	7.23E-05
22	GO:1990258: histone glutamine methylation	7.23E-05
23	GO:0009793: embryo development ending in seed dormancy	1.02E-04
24	GO:0009735: response to cytokinin	1.06E-04
25	GO:0006820: anion transport	1.10E-04
26	GO:0045041: protein import into mitochondrial intermembrane space	1.74E-04
27	GO:0034976: response to endoplasmic reticulum stress	1.85E-04
28	GO:0061077: chaperone-mediated protein folding	2.53E-04
29	GO:1902626: assembly of large subunit precursor of preribosome	2.93E-04
30	GO:0042256: mature ribosome assembly	2.93E-04
31	GO:0045039: protein import into mitochondrial inner membrane	2.93E-04
32	GO:0055074: calcium ion homeostasis	2.93E-04
33	GO:0010197: polar nucleus fusion	4.18E-04
34	GO:0006986: response to unfolded protein	4.23E-04
35	GO:0007004: telomere maintenance via telomerase	4.23E-04
36	GO:0070301: cellular response to hydrogen peroxide	4.23E-04
37	GO:0051085: chaperone mediated protein folding requiring cofactor	4.23E-04
38	GO:0006241: CTP biosynthetic process	4.23E-04
39	GO:0006165: nucleoside diphosphate phosphorylation	4.23E-04
40	GO:0006228: UTP biosynthetic process	4.23E-04
41	GO:0006183: GTP biosynthetic process	5.65E-04
42	GO:0071493: cellular response to UV-B	7.14E-04
43	GO:0031167: rRNA methylation	7.14E-04
44	GO:0006458: 'de novo' protein folding	1.04E-03
45	GO:0016444: somatic cell DNA recombination	1.04E-03
46	GO:0009955: adaxial/abaxial pattern specification	1.04E-03
47	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	1.04E-03
48	GO:0042026: protein refolding	1.04E-03
49	GO:0009423: chorismate biosynthetic process	1.04E-03
50	GO:0010043: response to zinc ion	1.08E-03
51	GO:0001522: pseudouridine synthesis	1.40E-03
52	GO:0000028: ribosomal small subunit assembly	1.40E-03
53	GO:0050821: protein stabilization	1.40E-03
54	GO:0001510: RNA methylation	1.59E-03
55	GO:0006189: 'de novo' IMP biosynthetic process	1.80E-03
56	GO:0098656: anion transmembrane transport	1.80E-03
57	GO:0090332: stomatal closure	2.01E-03
58	GO:0006364: rRNA processing	2.02E-03
59	GO:0010162: seed dormancy process	2.23E-03
60	GO:0009073: aromatic amino acid family biosynthetic process	2.46E-03
61	GO:0010075: regulation of meristem growth	2.94E-03
62	GO:0009934: regulation of meristem structural organization	3.19E-03
63	GO:0048467: gynoecium development	3.19E-03
64	GO:0006541: glutamine metabolic process	3.19E-03
65	GO:0010187: negative regulation of seed germination	3.98E-03
66	GO:0009944: polarity specification of adaxial/abaxial axis	3.98E-03
67	GO:0030150: protein import into mitochondrial matrix	3.98E-03
68	GO:0015992: proton transport	4.54E-03
69	GO:0006334: nucleosome assembly	4.54E-03
70	GO:0030433: ubiquitin-dependent ERAD pathway	4.83E-03
71	GO:0009294: DNA mediated transformation	5.13E-03
72	GO:0009306: protein secretion	5.43E-03
73	GO:0008033: tRNA processing	6.05E-03
74	GO:0048868: pollen tube development	6.38E-03
75	GO:0080156: mitochondrial mRNA modification	7.38E-03
76	GO:0032502: developmental process	7.72E-03
77	GO:0009567: double fertilization forming a zygote and endosperm	8.43E-03
78	GO:0010286: heat acclimation	8.79E-03
79	GO:0009615: response to virus	9.54E-03
80	GO:0009816: defense response to bacterium, incompatible interaction	9.92E-03
81	GO:0016049: cell growth	1.11E-02
82	GO:0010311: lateral root formation	1.19E-02
83	GO:0006811: ion transport	1.23E-02
84	GO:0048527: lateral root development	1.27E-02
85	GO:0000724: double-strand break repair via homologous recombination	1.32E-02
86	GO:0009853: photorespiration	1.36E-02
87	GO:0008283: cell proliferation	1.63E-02
88	GO:0009409: response to cold	1.67E-02
89	GO:0016569: covalent chromatin modification	2.47E-02
90	GO:0009553: embryo sac development	2.53E-02
91	GO:0006396: RNA processing	2.64E-02
92	GO:0006414: translational elongation	3.69E-02
93	GO:0009451: RNA modification	3.87E-02
94	GO:0009617: response to bacterium	4.32E-02
95	GO:0009414: response to water deprivation	4.87E-02

Rank	GO Term	Adjusted P value
1	GO:0003922: GMP synthase (glutamine-hydrolyzing) activity	0.00E+00
2	GO:0034513: box H/ACA snoRNA binding	0.00E+00
3	GO:0004107: chorismate synthase activity	0.00E+00
4	GO:0003735: structural constituent of ribosome	1.86E-27
5	GO:0051082: unfolded protein binding	1.24E-15
6	GO:0003729: mRNA binding	1.71E-08
7	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.70E-06
8	GO:0003723: RNA binding	4.06E-06
9	GO:0030515: snoRNA binding	2.60E-05
10	GO:0005507: copper ion binding	3.29E-05
11	GO:0015288: porin activity	3.42E-05
12	GO:0008308: voltage-gated anion channel activity	4.37E-05
13	GO:1990259: histone-glutamine methyltransferase activity	7.23E-05
14	GO:0004638: phosphoribosylaminoimidazole carboxylase activity	7.23E-05
15	GO:0003746: translation elongation factor activity	8.55E-05
16	GO:0070034: telomerase RNA binding	1.74E-04
17	GO:0008649: rRNA methyltransferase activity	2.93E-04
18	GO:0070180: large ribosomal subunit rRNA binding	2.93E-04
19	GO:0004550: nucleoside diphosphate kinase activity	4.23E-04
20	GO:0002020: protease binding	7.14E-04
21	GO:0016462: pyrophosphatase activity	8.73E-04
22	GO:0008135: translation factor activity, RNA binding	1.59E-03
23	GO:0044183: protein binding involved in protein folding	2.46E-03
24	GO:0004129: cytochrome-c oxidase activity	2.46E-03
25	GO:0005524: ATP binding	2.48E-03
26	GO:0004089: carbonate dehydratase activity	2.94E-03
27	GO:0031072: heat shock protein binding	2.94E-03
28	GO:0000175: 3'-5'-exoribonuclease activity	2.94E-03
29	GO:0015266: protein channel activity	2.94E-03
30	GO:0019843: rRNA binding	3.57E-03
31	GO:0004407: histone deacetylase activity	3.98E-03
32	GO:0051087: chaperone binding	4.26E-03
33	GO:0003756: protein disulfide isomerase activity	5.43E-03
34	GO:0016853: isomerase activity	6.70E-03
35	GO:0010181: FMN binding	6.70E-03
36	GO:0030246: carbohydrate binding	6.75E-03
37	GO:0005509: calcium ion binding	1.02E-02
38	GO:0050897: cobalt ion binding	1.27E-02
39	GO:0003697: single-stranded DNA binding	1.36E-02
40	GO:0005515: protein binding	1.36E-02
41	GO:0003924: GTPase activity	1.39E-02
42	GO:0042393: histone binding	1.49E-02
43	GO:0046872: metal ion binding	1.96E-02
44	GO:0016887: ATPase activity	2.16E-02
45	GO:0008565: protein transporter activity	3.44E-02
46	GO:0005525: GTP binding	4.06E-02

Rank	GO Term	Adjusted P value
1	GO:0090661: box H/ACA telomerase RNP complex	0.00E+00
2	GO:0042719: mitochondrial intermembrane space protein transporter complex	0.00E+00
3	GO:0072589: box H/ACA scaRNP complex	0.00E+00
4	GO:0022626: cytosolic ribosome	9.45E-24
5	GO:0005730: nucleolus	2.28E-20
6	GO:0022625: cytosolic large ribosomal subunit	3.72E-16
7	GO:0005840: ribosome	4.21E-16
8	GO:0005774: vacuolar membrane	6.50E-15
9	GO:0022627: cytosolic small ribosomal subunit	9.42E-14
10	GO:0005829: cytosol	2.55E-13
11	GO:0009506: plasmodesma	1.68E-12
12	GO:0005773: vacuole	5.29E-10
13	GO:0005788: endoplasmic reticulum lumen	1.64E-08
14	GO:0005737: cytoplasm	6.44E-08
15	GO:0005739: mitochondrion	3.67E-07
16	GO:0015934: large ribosomal subunit	2.35E-06
17	GO:0005783: endoplasmic reticulum	2.43E-06
18	GO:0016020: membrane	3.51E-06
19	GO:0005758: mitochondrial intermembrane space	4.61E-06
20	GO:0046930: pore complex	4.37E-05
21	GO:0005886: plasma membrane	6.46E-05
22	GO:0015030: Cajal body	6.65E-05
23	GO:0030686: 90S preribosome	7.23E-05
24	GO:0005618: cell wall	8.20E-05
25	GO:0009507: chloroplast	8.42E-05
26	GO:0005747: mitochondrial respiratory chain complex I	2.49E-04
27	GO:0005741: mitochondrial outer membrane	2.53E-04
28	GO:0005743: mitochondrial inner membrane	3.09E-04
29	GO:0031429: box H/ACA snoRNP complex	4.23E-04
30	GO:0005759: mitochondrial matrix	5.47E-04
31	GO:0031428: box C/D snoRNP complex	8.73E-04
32	GO:0016363: nuclear matrix	1.04E-03
33	GO:0048046: apoplast	1.26E-03
34	GO:0005742: mitochondrial outer membrane translocase complex	1.59E-03
35	GO:0032040: small-subunit processome	2.70E-03
36	GO:0045271: respiratory chain complex I	4.26E-03
37	GO:0015935: small ribosomal subunit	4.54E-03
38	GO:0016592: mediator complex	7.72E-03
39	GO:0009505: plant-type cell wall	1.51E-02
40	GO:0031966: mitochondrial membrane	1.91E-02
41	GO:0005635: nuclear envelope	2.11E-02