Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G49380

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
2GO:0061635: regulation of protein complex stability0.00E+00
3GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
4GO:0042820: vitamin B6 catabolic process0.00E+00
5GO:0042821: pyridoxal biosynthetic process0.00E+00
6GO:0005996: monosaccharide metabolic process0.00E+00
7GO:0007638: mechanosensory behavior0.00E+00
8GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
9GO:0015739: sialic acid transport0.00E+00
10GO:0006399: tRNA metabolic process0.00E+00
11GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
12GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
13GO:0045176: apical protein localization0.00E+00
14GO:0033494: ferulate metabolic process0.00E+00
15GO:0015979: photosynthesis9.47E-15
16GO:0009773: photosynthetic electron transport in photosystem I2.50E-12
17GO:0009658: chloroplast organization3.93E-07
18GO:0010207: photosystem II assembly4.19E-06
19GO:0009735: response to cytokinin4.44E-06
20GO:0030388: fructose 1,6-bisphosphate metabolic process6.68E-06
21GO:0010027: thylakoid membrane organization7.45E-06
22GO:0006810: transport2.24E-05
23GO:0006518: peptide metabolic process2.33E-05
24GO:0006000: fructose metabolic process2.33E-05
25GO:0055114: oxidation-reduction process3.92E-05
26GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly5.10E-05
27GO:0018119: peptidyl-cysteine S-nitrosylation6.33E-05
28GO:0010037: response to carbon dioxide9.01E-05
29GO:0015976: carbon utilization9.01E-05
30GO:2000122: negative regulation of stomatal complex development9.01E-05
31GO:0045454: cell redox homeostasis1.20E-04
32GO:0042549: photosystem II stabilization2.01E-04
33GO:0010190: cytochrome b6f complex assembly2.01E-04
34GO:0061077: chaperone-mediated protein folding2.46E-04
35GO:0010196: nonphotochemical quenching3.51E-04
36GO:0042742: defense response to bacterium3.75E-04
37GO:1904966: positive regulation of vitamin E biosynthetic process3.86E-04
38GO:0000481: maturation of 5S rRNA3.86E-04
39GO:1904964: positive regulation of phytol biosynthetic process3.86E-04
40GO:0033481: galacturonate biosynthetic process3.86E-04
41GO:0034337: RNA folding3.86E-04
42GO:0071588: hydrogen peroxide mediated signaling pathway3.86E-04
43GO:0010729: positive regulation of hydrogen peroxide biosynthetic process3.86E-04
44GO:0009443: pyridoxal 5'-phosphate salvage3.86E-04
45GO:0016117: carotenoid biosynthetic process3.91E-04
46GO:0009657: plastid organization5.37E-04
47GO:0032544: plastid translation5.37E-04
48GO:0006002: fructose 6-phosphate metabolic process5.37E-04
49GO:0071482: cellular response to light stimulus5.37E-04
50GO:1902326: positive regulation of chlorophyll biosynthetic process8.38E-04
51GO:2000030: regulation of response to red or far red light8.38E-04
52GO:0034755: iron ion transmembrane transport8.38E-04
53GO:0097054: L-glutamate biosynthetic process8.38E-04
54GO:0010270: photosystem II oxygen evolving complex assembly8.38E-04
55GO:0043039: tRNA aminoacylation8.38E-04
56GO:0010115: regulation of abscisic acid biosynthetic process8.38E-04
57GO:0009409: response to cold8.44E-04
58GO:0009750: response to fructose1.02E-03
59GO:0006415: translational termination1.02E-03
60GO:0006816: calcium ion transport1.02E-03
61GO:0006094: gluconeogenesis1.32E-03
62GO:0005986: sucrose biosynthetic process1.32E-03
63GO:0071492: cellular response to UV-A1.36E-03
64GO:0006696: ergosterol biosynthetic process1.36E-03
65GO:0090506: axillary shoot meristem initiation1.36E-03
66GO:0006954: inflammatory response1.36E-03
67GO:0018298: protein-chromophore linkage1.39E-03
68GO:0010020: chloroplast fission1.48E-03
69GO:0019253: reductive pentose-phosphate cycle1.48E-03
70GO:0006165: nucleoside diphosphate phosphorylation1.96E-03
71GO:0006228: UTP biosynthetic process1.96E-03
72GO:0043572: plastid fission1.96E-03
73GO:2001141: regulation of RNA biosynthetic process1.96E-03
74GO:0006020: inositol metabolic process1.96E-03
75GO:0007231: osmosensory signaling pathway1.96E-03
76GO:0006537: glutamate biosynthetic process1.96E-03
77GO:0009800: cinnamic acid biosynthetic process1.96E-03
78GO:0006241: CTP biosynthetic process1.96E-03
79GO:0009768: photosynthesis, light harvesting in photosystem I2.27E-03
80GO:0006418: tRNA aminoacylation for protein translation2.27E-03
81GO:0006021: inositol biosynthetic process2.63E-03
82GO:0019676: ammonia assimilation cycle2.63E-03
83GO:0071486: cellular response to high light intensity2.63E-03
84GO:0009765: photosynthesis, light harvesting2.63E-03
85GO:0006183: GTP biosynthetic process2.63E-03
86GO:0045727: positive regulation of translation2.63E-03
87GO:0015994: chlorophyll metabolic process2.63E-03
88GO:0033500: carbohydrate homeostasis2.63E-03
89GO:0006546: glycine catabolic process2.63E-03
90GO:0006564: L-serine biosynthetic process3.37E-03
91GO:0016120: carotene biosynthetic process3.37E-03
92GO:0006656: phosphatidylcholine biosynthetic process3.37E-03
93GO:0031365: N-terminal protein amino acid modification3.37E-03
94GO:0006461: protein complex assembly3.37E-03
95GO:0016123: xanthophyll biosynthetic process3.37E-03
96GO:0080110: sporopollenin biosynthetic process3.37E-03
97GO:0000413: protein peptidyl-prolyl isomerization3.79E-03
98GO:0010087: phloem or xylem histogenesis3.79E-03
99GO:0006596: polyamine biosynthetic process4.17E-03
100GO:0006828: manganese ion transport4.17E-03
101GO:0006559: L-phenylalanine catabolic process4.17E-03
102GO:0046855: inositol phosphate dephosphorylation4.17E-03
103GO:0006561: proline biosynthetic process4.17E-03
104GO:0048759: xylem vessel member cell differentiation4.17E-03
105GO:0048827: phyllome development4.17E-03
106GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.17E-03
107GO:0016554: cytidine to uridine editing4.17E-03
108GO:0006458: 'de novo' protein folding5.02E-03
109GO:0010067: procambium histogenesis5.02E-03
110GO:0042026: protein refolding5.02E-03
111GO:0009854: oxidative photosynthetic carbon pathway5.02E-03
112GO:0010019: chloroplast-nucleus signaling pathway5.02E-03
113GO:0010555: response to mannitol5.02E-03
114GO:0042372: phylloquinone biosynthetic process5.02E-03
115GO:0009645: response to low light intensity stimulus5.94E-03
116GO:0006400: tRNA modification5.94E-03
117GO:0050829: defense response to Gram-negative bacterium5.94E-03
118GO:0009819: drought recovery6.90E-03
119GO:0009642: response to light intensity6.90E-03
120GO:0032508: DNA duplex unwinding6.90E-03
121GO:0030091: protein repair6.90E-03
122GO:0015995: chlorophyll biosynthetic process8.62E-03
123GO:0000373: Group II intron splicing8.99E-03
124GO:0015780: nucleotide-sugar transport8.99E-03
125GO:0090305: nucleic acid phosphodiester bond hydrolysis8.99E-03
126GO:0010206: photosystem II repair8.99E-03
127GO:0009416: response to light stimulus9.21E-03
128GO:0009817: defense response to fungus, incompatible interaction9.56E-03
129GO:1900865: chloroplast RNA modification1.01E-02
130GO:0000160: phosphorelay signal transduction system1.01E-02
131GO:0006779: porphyrin-containing compound biosynthetic process1.01E-02
132GO:0009098: leucine biosynthetic process1.01E-02
133GO:0009407: toxin catabolic process1.06E-02
134GO:0010119: regulation of stomatal movement1.11E-02
135GO:0009870: defense response signaling pathway, resistance gene-dependent1.13E-02
136GO:0006782: protoporphyrinogen IX biosynthetic process1.13E-02
137GO:0009688: abscisic acid biosynthetic process1.13E-02
138GO:0043069: negative regulation of programmed cell death1.13E-02
139GO:0009637: response to blue light1.21E-02
140GO:0009853: photorespiration1.21E-02
141GO:0009073: aromatic amino acid family biosynthetic process1.25E-02
142GO:0043085: positive regulation of catalytic activity1.25E-02
143GO:0006879: cellular iron ion homeostasis1.25E-02
144GO:0006352: DNA-templated transcription, initiation1.25E-02
145GO:0000272: polysaccharide catabolic process1.25E-02
146GO:0019684: photosynthesis, light reaction1.25E-02
147GO:0009089: lysine biosynthetic process via diaminopimelate1.25E-02
148GO:0034599: cellular response to oxidative stress1.27E-02
149GO:0005983: starch catabolic process1.38E-02
150GO:0006790: sulfur compound metabolic process1.38E-02
151GO:0055085: transmembrane transport1.39E-02
152GO:0006457: protein folding1.44E-02
153GO:0010229: inflorescence development1.51E-02
154GO:0009767: photosynthetic electron transport chain1.51E-02
155GO:0010114: response to red light1.57E-02
156GO:0010223: secondary shoot formation1.64E-02
157GO:0010540: basipetal auxin transport1.64E-02
158GO:0010143: cutin biosynthetic process1.64E-02
159GO:0008643: carbohydrate transport1.70E-02
160GO:0009644: response to high light intensity1.70E-02
161GO:0009636: response to toxic substance1.77E-02
162GO:0005985: sucrose metabolic process1.78E-02
163GO:0070588: calcium ion transmembrane transport1.78E-02
164GO:0046854: phosphatidylinositol phosphorylation1.78E-02
165GO:0009225: nucleotide-sugar metabolic process1.78E-02
166GO:0006636: unsaturated fatty acid biosynthetic process1.92E-02
167GO:0019762: glucosinolate catabolic process1.92E-02
168GO:0000027: ribosomal large subunit assembly2.07E-02
169GO:0019344: cysteine biosynthetic process2.07E-02
170GO:0009736: cytokinin-activated signaling pathway2.12E-02
171GO:0006813: potassium ion transport2.12E-02
172GO:0042254: ribosome biogenesis2.14E-02
173GO:0080092: regulation of pollen tube growth2.53E-02
174GO:0019748: secondary metabolic process2.53E-02
175GO:0016226: iron-sulfur cluster assembly2.53E-02
176GO:0009294: DNA mediated transformation2.69E-02
177GO:0001944: vasculature development2.69E-02
178GO:0009306: protein secretion2.86E-02
179GO:0010089: xylem development2.86E-02
180GO:0010584: pollen exine formation2.86E-02
181GO:0009611: response to wounding3.06E-02
182GO:0042631: cellular response to water deprivation3.20E-02
183GO:0006662: glycerol ether metabolic process3.38E-02
184GO:0010182: sugar mediated signaling pathway3.38E-02
185GO:0006814: sodium ion transport3.55E-02
186GO:0048825: cotyledon development3.74E-02
187GO:0009791: post-embryonic development3.74E-02
188GO:0006508: proteolysis3.88E-02
189GO:0000302: response to reactive oxygen species3.92E-02
190GO:0002229: defense response to oomycetes3.92E-02
191GO:0032259: methylation4.19E-02
192GO:0042744: hydrogen peroxide catabolic process4.29E-02
193GO:1901657: glycosyl compound metabolic process4.30E-02
194GO:0019760: glucosinolate metabolic process4.49E-02
195GO:0006633: fatty acid biosynthetic process4.73E-02
196GO:0006413: translational initiation4.84E-02
197GO:0040008: regulation of growth4.95E-02
RankGO TermAdjusted P value
1GO:0010301: xanthoxin dehydrogenase activity0.00E+00
2GO:0015136: sialic acid transmembrane transporter activity0.00E+00
3GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
4GO:0010487: thermospermine synthase activity0.00E+00
5GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
6GO:0045435: lycopene epsilon cyclase activity0.00E+00
7GO:0004822: isoleucine-tRNA ligase activity0.00E+00
8GO:0046905: phytoene synthase activity0.00E+00
9GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
10GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
11GO:0051738: xanthophyll binding0.00E+00
12GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
13GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
14GO:0005456: CMP-N-acetylneuraminate transmembrane transporter activity0.00E+00
15GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
16GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
17GO:0008887: glycerate kinase activity0.00E+00
18GO:0051920: peroxiredoxin activity5.56E-08
19GO:0004033: aldo-keto reductase (NADP) activity1.97E-07
20GO:0016209: antioxidant activity1.97E-07
21GO:0003755: peptidyl-prolyl cis-trans isomerase activity5.25E-06
22GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.68E-06
23GO:0016168: chlorophyll binding8.60E-06
24GO:0019843: rRNA binding3.99E-05
25GO:0016149: translation release factor activity, codon specific5.10E-05
26GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor9.01E-05
27GO:0005528: FK506 binding1.87E-04
28GO:0004222: metalloendopeptidase activity2.17E-04
29GO:0046872: metal ion binding2.83E-04
30GO:0022891: substrate-specific transmembrane transporter activity3.14E-04
31GO:0019899: enzyme binding3.51E-04
32GO:0004831: tyrosine-tRNA ligase activity3.86E-04
33GO:0016768: spermine synthase activity3.86E-04
34GO:0051996: squalene synthase activity3.86E-04
35GO:0016041: glutamate synthase (ferredoxin) activity3.86E-04
36GO:0047259: glucomannan 4-beta-mannosyltransferase activity3.86E-04
37GO:0080132: fatty acid alpha-hydroxylase activity3.86E-04
38GO:0003747: translation release factor activity6.44E-04
39GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase8.38E-04
40GO:0008934: inositol monophosphate 1-phosphatase activity8.38E-04
41GO:0052833: inositol monophosphate 4-phosphatase activity8.38E-04
42GO:0004310: farnesyl-diphosphate farnesyltransferase activity8.38E-04
43GO:0000234: phosphoethanolamine N-methyltransferase activity8.38E-04
44GO:0003862: 3-isopropylmalate dehydrogenase activity8.38E-04
45GO:0008967: phosphoglycolate phosphatase activity8.38E-04
46GO:0047746: chlorophyllase activity8.38E-04
47GO:0042389: omega-3 fatty acid desaturase activity8.38E-04
48GO:0004618: phosphoglycerate kinase activity8.38E-04
49GO:0010297: heteropolysaccharide binding8.38E-04
50GO:0004617: phosphoglycerate dehydrogenase activity8.38E-04
51GO:0004047: aminomethyltransferase activity8.38E-04
52GO:0052832: inositol monophosphate 3-phosphatase activity8.38E-04
53GO:0016630: protochlorophyllide reductase activity8.38E-04
54GO:0004601: peroxidase activity1.16E-03
55GO:0004089: carbonate dehydratase activity1.32E-03
56GO:0031072: heat shock protein binding1.32E-03
57GO:0045548: phenylalanine ammonia-lyase activity1.36E-03
58GO:0002161: aminoacyl-tRNA editing activity1.36E-03
59GO:0004148: dihydrolipoyl dehydrogenase activity1.36E-03
60GO:0070402: NADPH binding1.36E-03
61GO:0050734: hydroxycinnamoyltransferase activity1.36E-03
62GO:0031409: pigment binding1.85E-03
63GO:0004550: nucleoside diphosphate kinase activity1.96E-03
64GO:0008508: bile acid:sodium symporter activity1.96E-03
65GO:0008324: cation transmembrane transporter activity2.27E-03
66GO:0050378: UDP-glucuronate 4-epimerase activity2.63E-03
67GO:0043495: protein anchor2.63E-03
68GO:0004659: prenyltransferase activity2.63E-03
69GO:0001053: plastid sigma factor activity2.63E-03
70GO:0016987: sigma factor activity2.63E-03
71GO:1990137: plant seed peroxidase activity2.63E-03
72GO:0016773: phosphotransferase activity, alcohol group as acceptor3.37E-03
73GO:0051538: 3 iron, 4 sulfur cluster binding3.37E-03
74GO:0003959: NADPH dehydrogenase activity3.37E-03
75GO:0004812: aminoacyl-tRNA ligase activity3.51E-03
76GO:0016208: AMP binding4.17E-03
77GO:0004130: cytochrome-c peroxidase activity4.17E-03
78GO:0016688: L-ascorbate peroxidase activity4.17E-03
79GO:0008200: ion channel inhibitor activity4.17E-03
80GO:0050662: coenzyme binding4.40E-03
81GO:0004723: calcium-dependent protein serine/threonine phosphatase activity5.02E-03
82GO:0051753: mannan synthase activity5.02E-03
83GO:0033743: peptide-methionine (R)-S-oxide reductase activity5.02E-03
84GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity5.02E-03
85GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity5.02E-03
86GO:0048038: quinone binding5.05E-03
87GO:0000156: phosphorelay response regulator activity5.75E-03
88GO:0005338: nucleotide-sugar transmembrane transporter activity5.94E-03
89GO:0008235: metalloexopeptidase activity5.94E-03
90GO:0051082: unfolded protein binding5.96E-03
91GO:0008237: metallopeptidase activity6.51E-03
92GO:0016491: oxidoreductase activity6.65E-03
93GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water7.92E-03
94GO:0008135: translation factor activity, RNA binding7.92E-03
95GO:0005509: calcium ion binding9.29E-03
96GO:0005384: manganese ion transmembrane transporter activity1.01E-02
97GO:0005381: iron ion transmembrane transporter activity1.01E-02
98GO:0030234: enzyme regulator activity1.13E-02
99GO:0008047: enzyme activator activity1.13E-02
100GO:0015386: potassium:proton antiporter activity1.25E-02
101GO:0004177: aminopeptidase activity1.25E-02
102GO:0044183: protein binding involved in protein folding1.25E-02
103GO:0005089: Rho guanyl-nucleotide exchange factor activity1.25E-02
104GO:0003824: catalytic activity1.30E-02
105GO:0000049: tRNA binding1.38E-02
106GO:0004022: alcohol dehydrogenase (NAD) activity1.51E-02
107GO:0015095: magnesium ion transmembrane transporter activity1.51E-02
108GO:0005262: calcium channel activity1.51E-02
109GO:0004364: glutathione transferase activity1.51E-02
110GO:0003735: structural constituent of ribosome1.60E-02
111GO:0042802: identical protein binding1.63E-02
112GO:0051537: 2 iron, 2 sulfur cluster binding1.70E-02
113GO:0016787: hydrolase activity1.87E-02
114GO:0051287: NAD binding1.90E-02
115GO:0051536: iron-sulfur cluster binding2.07E-02
116GO:0015079: potassium ion transmembrane transporter activity2.22E-02
117GO:0043424: protein histidine kinase binding2.22E-02
118GO:0004176: ATP-dependent peptidase activity2.37E-02
119GO:0033612: receptor serine/threonine kinase binding2.37E-02
120GO:0008514: organic anion transmembrane transporter activity2.86E-02
121GO:0047134: protein-disulfide reductase activity3.03E-02
122GO:0005102: receptor binding3.03E-02
123GO:0003723: RNA binding3.19E-02
124GO:0004791: thioredoxin-disulfide reductase activity3.55E-02
125GO:0004518: nuclease activity4.11E-02
126GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.30E-02
127GO:0016759: cellulose synthase activity4.49E-02
128GO:0016722: oxidoreductase activity, oxidizing metal ions4.69E-02
129GO:0008483: transaminase activity4.69E-02
130GO:0009055: electron carrier activity4.81E-02
131GO:0016597: amino acid binding4.89E-02
RankGO TermAdjusted P value
1GO:0009575: chromoplast stroma0.00E+00
2GO:0009571: proplastid stroma0.00E+00
3GO:0009507: chloroplast2.87E-73
4GO:0009535: chloroplast thylakoid membrane2.82E-35
5GO:0009941: chloroplast envelope7.42E-35
6GO:0009570: chloroplast stroma8.68E-32
7GO:0009579: thylakoid3.57E-17
8GO:0009543: chloroplast thylakoid lumen4.36E-17
9GO:0009534: chloroplast thylakoid9.48E-15
10GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.58E-13
11GO:0031977: thylakoid lumen1.58E-10
12GO:0048046: apoplast1.99E-07
13GO:0010319: stromule2.08E-07
14GO:0031969: chloroplast membrane9.79E-07
15GO:0009523: photosystem II2.34E-06
16GO:0030095: chloroplast photosystem II4.19E-06
17GO:0009654: photosystem II oxygen evolving complex1.09E-05
18GO:0042651: thylakoid membrane1.09E-05
19GO:0010287: plastoglobule3.46E-05
20GO:0019898: extrinsic component of membrane5.01E-05
21GO:0009533: chloroplast stromal thylakoid3.51E-04
22GO:0009344: nitrite reductase complex [NAD(P)H]3.86E-04
23GO:0009782: photosystem I antenna complex3.86E-04
24GO:0042170: plastid membrane8.38E-04
25GO:0000427: plastid-encoded plastid RNA polymerase complex8.38E-04
26GO:0005840: ribosome1.34E-03
27GO:0030076: light-harvesting complex1.66E-03
28GO:0009517: PSII associated light-harvesting complex II2.63E-03
29GO:0009706: chloroplast inner membrane5.96E-03
30GO:0005811: lipid particle7.92E-03
31GO:0015934: large ribosomal subunit1.11E-02
32GO:0016324: apical plasma membrane1.13E-02
33GO:0000311: plastid large ribosomal subunit1.38E-02
34GO:0032040: small-subunit processome1.38E-02
35GO:0009536: plastid1.61E-02
36GO:0005875: microtubule associated complex1.92E-02
37GO:0005758: mitochondrial intermembrane space2.07E-02
38GO:0009532: plastid stroma2.37E-02
39GO:0016020: membrane3.11E-02
40GO:0005770: late endosome3.38E-02
41GO:0009522: photosystem I3.55E-02
42GO:0032580: Golgi cisterna membrane4.49E-02
43GO:0005778: peroxisomal membrane4.69E-02
44GO:0005759: mitochondrial matrix4.73E-02
Gene type



Gene DE type