Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G48840

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0030644: cellular chloride ion homeostasis0.00E+00
2GO:0010600: regulation of auxin biosynthetic process3.07E-06
3GO:0010244: response to low fluence blue light stimulus by blue low-fluence system1.16E-05
4GO:0009645: response to low light intensity stimulus1.59E-05
5GO:0010928: regulation of auxin mediated signaling pathway2.11E-05
6GO:0080065: 4-alpha-methyl-delta7-sterol oxidation5.34E-05
7GO:0032958: inositol phosphate biosynthetic process5.34E-05
8GO:0006355: regulation of transcription, DNA-templated6.68E-05
9GO:0009644: response to high light intensity7.75E-05
10GO:0006883: cellular sodium ion homeostasis1.30E-04
11GO:0051170: nuclear import1.30E-04
12GO:1902884: positive regulation of response to oxidative stress1.30E-04
13GO:0009768: photosynthesis, light harvesting in photosystem I1.51E-04
14GO:0048511: rhythmic process1.67E-04
15GO:0010017: red or far-red light signaling pathway1.84E-04
16GO:1902448: positive regulation of shade avoidance2.22E-04
17GO:1901562: response to paraquat2.22E-04
18GO:0006020: inositol metabolic process3.25E-04
19GO:1901332: negative regulation of lateral root development3.25E-04
20GO:0007623: circadian rhythm3.69E-04
21GO:0006351: transcription, DNA-templated4.33E-04
22GO:0009765: photosynthesis, light harvesting4.35E-04
23GO:1901002: positive regulation of response to salt stress4.35E-04
24GO:0015846: polyamine transport4.35E-04
25GO:0010286: heat acclimation4.47E-04
26GO:0009416: response to light stimulus4.52E-04
27GO:0009817: defense response to fungus, incompatible interaction6.46E-04
28GO:0018298: protein-chromophore linkage6.46E-04
29GO:0000160: phosphorelay signal transduction system6.77E-04
30GO:0010218: response to far red light7.10E-04
31GO:0009861: jasmonic acid and ethylene-dependent systemic resistance8.05E-04
32GO:0080167: response to karrikin8.38E-04
33GO:0010161: red light signaling pathway9.40E-04
34GO:0009640: photomorphogenesis1.03E-03
35GO:0010114: response to red light1.03E-03
36GO:0009704: de-etiolation1.08E-03
37GO:0010099: regulation of photomorphogenesis1.23E-03
38GO:0009827: plant-type cell wall modification1.23E-03
39GO:0009585: red, far-red light phototransduction1.37E-03
40GO:0048354: mucilage biosynthetic process involved in seed coat development1.54E-03
41GO:0009641: shade avoidance1.71E-03
42GO:0010162: seed dormancy process1.71E-03
43GO:0055062: phosphate ion homeostasis1.71E-03
44GO:0009409: response to cold2.06E-03
45GO:0050826: response to freezing2.25E-03
46GO:0018107: peptidyl-threonine phosphorylation2.25E-03
47GO:0009718: anthocyanin-containing compound biosynthetic process2.25E-03
48GO:0009266: response to temperature stimulus2.43E-03
49GO:0019853: L-ascorbic acid biosynthetic process2.63E-03
50GO:0090351: seedling development2.63E-03
51GO:0010431: seed maturation3.46E-03
52GO:0003333: amino acid transmembrane transport3.46E-03
53GO:0006012: galactose metabolic process3.90E-03
54GO:0009693: ethylene biosynthetic process3.90E-03
55GO:0009737: response to abscisic acid4.10E-03
56GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.36E-03
57GO:0006814: sodium ion transport5.09E-03
58GO:0009723: response to ethylene5.89E-03
59GO:1901657: glycosyl compound metabolic process6.12E-03
60GO:0009414: response to water deprivation6.59E-03
61GO:0015979: photosynthesis7.20E-03
62GO:0016126: sterol biosynthetic process7.22E-03
63GO:0010029: regulation of seed germination7.50E-03
64GO:0045892: negative regulation of transcription, DNA-templated7.66E-03
65GO:0015995: chlorophyll biosynthetic process8.09E-03
66GO:0048573: photoperiodism, flowering8.09E-03
67GO:0009651: response to salt stress8.16E-03
68GO:0006629: lipid metabolic process9.31E-03
69GO:0009408: response to heat9.31E-03
70GO:0009631: cold acclimation9.61E-03
71GO:0009637: response to blue light1.02E-02
72GO:0051707: response to other organism1.23E-02
73GO:0008643: carbohydrate transport1.30E-02
74GO:0042538: hyperosmotic salinity response1.44E-02
75GO:0051603: proteolysis involved in cellular protein catabolic process1.55E-02
76GO:0006857: oligopeptide transport1.59E-02
77GO:0009738: abscisic acid-activated signaling pathway1.60E-02
78GO:0009909: regulation of flower development1.63E-02
79GO:0035556: intracellular signal transduction1.75E-02
80GO:0009624: response to nematode1.94E-02
81GO:0018105: peptidyl-serine phosphorylation1.98E-02
82GO:0055085: transmembrane transport2.11E-02
83GO:0006457: protein folding2.15E-02
84GO:0010228: vegetative to reproductive phase transition of meristem2.96E-02
85GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process3.11E-02
86GO:0009739: response to gibberellin3.11E-02
87GO:0009617: response to bacterium3.25E-02
88GO:0009658: chloroplast organization3.91E-02
89GO:0006970: response to osmotic stress4.12E-02
90GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.67E-02
91GO:0010200: response to chitin4.67E-02
92GO:0044550: secondary metabolite biosynthetic process4.84E-02
RankGO TermAdjusted P value
1GO:0047668: amygdalin beta-glucosidase activity0.00E+00
2GO:0080083: beta-gentiobiose beta-glucosidase activity0.00E+00
3GO:0030504: inorganic diphosphate transmembrane transporter activity0.00E+00
4GO:0010349: L-galactose dehydrogenase activity0.00E+00
5GO:0004567: beta-mannosidase activity0.00E+00
6GO:0080082: esculin beta-glucosidase activity0.00E+00
7GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity0.00E+00
8GO:0033857: diphosphoinositol-pentakisphosphate kinase activity5.34E-05
9GO:0000829: inositol heptakisphosphate kinase activity5.34E-05
10GO:0080079: cellobiose glucosidase activity5.34E-05
11GO:0000828: inositol hexakisphosphate kinase activity5.34E-05
12GO:0031409: pigment binding1.21E-04
13GO:0000254: C-4 methylsterol oxidase activity3.25E-04
14GO:0015203: polyamine transmembrane transporter activity3.25E-04
15GO:0000156: phosphorelay response regulator activity3.96E-04
16GO:0016168: chlorophyll binding5.28E-04
17GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen5.52E-04
18GO:0003677: DNA binding6.58E-04
19GO:0004033: aldo-keto reductase (NADP) activity1.08E-03
20GO:0003700: transcription factor activity, sequence-specific DNA binding1.10E-03
21GO:0015293: symporter activity1.15E-03
22GO:0000989: transcription factor activity, transcription factor binding1.38E-03
23GO:0015174: basic amino acid transmembrane transporter activity1.54E-03
24GO:0047372: acylglycerol lipase activity1.88E-03
25GO:0004565: beta-galactosidase activity2.25E-03
26GO:0005315: inorganic phosphate transmembrane transporter activity2.25E-03
27GO:0003712: transcription cofactor activity2.63E-03
28GO:0008270: zinc ion binding3.16E-03
29GO:0005351: sugar:proton symporter activity3.23E-03
30GO:0008514: organic anion transmembrane transporter activity4.13E-03
31GO:0046872: metal ion binding7.50E-03
32GO:0005215: transporter activity7.72E-03
33GO:0102483: scopolin beta-glucosidase activity8.09E-03
34GO:0008422: beta-glucosidase activity1.09E-02
35GO:0045735: nutrient reservoir activity1.70E-02
36GO:0005515: protein binding1.99E-02
37GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.32E-02
38GO:0015144: carbohydrate transmembrane transporter activity2.59E-02
39GO:0015297: antiporter activity2.77E-02
40GO:0005506: iron ion binding3.30E-02
41GO:0008168: methyltransferase activity3.81E-02
42GO:0046983: protein dimerization activity4.47E-02
43GO:0008233: peptidase activity4.50E-02
44GO:0004497: monooxygenase activity4.56E-02
45GO:0061630: ubiquitin protein ligase activity4.73E-02
46GO:0004672: protein kinase activity4.90E-02
RankGO TermAdjusted P value
1GO:0030076: light-harvesting complex1.07E-04
2GO:0010287: plastoglobule2.25E-04
3GO:0009522: photosystem I3.02E-04
4GO:0009898: cytoplasmic side of plasma membrane4.35E-04
5GO:0032586: protein storage vacuole membrane4.35E-04
6GO:0000326: protein storage vacuole1.23E-03
7GO:0010494: cytoplasmic stress granule1.38E-03
8GO:0009579: thylakoid3.49E-03
9GO:0009523: photosystem II5.34E-03
10GO:0000932: P-body7.22E-03
11GO:0016021: integral component of membrane1.19E-02
12GO:0009941: chloroplast envelope1.36E-02
13GO:0016607: nuclear speck1.74E-02
14GO:0009535: chloroplast thylakoid membrane1.89E-02
15GO:0009534: chloroplast thylakoid2.00E-02
16GO:0005623: cell2.32E-02
17GO:0031969: chloroplast membrane4.56E-02
Gene type



Gene DE type