Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G48450

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0098586: cellular response to virus0.00E+00
2GO:0090470: shoot organ boundary specification0.00E+00
3GO:0061635: regulation of protein complex stability0.00E+00
4GO:0017009: protein-phycocyanobilin linkage0.00E+00
5GO:0016553: base conversion or substitution editing0.00E+00
6GO:0010027: thylakoid membrane organization1.54E-08
7GO:0010196: nonphotochemical quenching1.92E-06
8GO:0015979: photosynthesis6.17E-06
9GO:0009773: photosynthetic electron transport in photosystem I1.40E-05
10GO:0010021: amylopectin biosynthetic process3.00E-05
11GO:0042549: photosystem II stabilization7.11E-05
12GO:0009913: epidermal cell differentiation7.11E-05
13GO:0009772: photosynthetic electron transport in photosystem II1.31E-04
14GO:0008152: metabolic process1.43E-04
15GO:0006605: protein targeting1.67E-04
16GO:0090548: response to nitrate starvation2.02E-04
17GO:0034337: RNA folding2.02E-04
18GO:0071588: hydrogen peroxide mediated signaling pathway2.02E-04
19GO:0043489: RNA stabilization2.02E-04
20GO:1902025: nitrate import2.02E-04
21GO:1904966: positive regulation of vitamin E biosynthetic process2.02E-04
22GO:0000481: maturation of 5S rRNA2.02E-04
23GO:1904964: positive regulation of phytol biosynthetic process2.02E-04
24GO:0080051: cutin transport2.02E-04
25GO:0033481: galacturonate biosynthetic process2.02E-04
26GO:0043686: co-translational protein modification2.02E-04
27GO:0009735: response to cytokinin3.37E-04
28GO:0015995: chlorophyll biosynthetic process3.73E-04
29GO:0018298: protein-chromophore linkage4.26E-04
30GO:0046741: transport of virus in host, tissue to tissue4.52E-04
31GO:0043255: regulation of carbohydrate biosynthetic process4.52E-04
32GO:1902326: positive regulation of chlorophyll biosynthetic process4.52E-04
33GO:0010115: regulation of abscisic acid biosynthetic process4.52E-04
34GO:0015908: fatty acid transport4.52E-04
35GO:0001736: establishment of planar polarity4.52E-04
36GO:0016024: CDP-diacylglycerol biosynthetic process4.70E-04
37GO:0032259: methylation5.89E-04
38GO:0090391: granum assembly7.36E-04
39GO:0006518: peptide metabolic process7.36E-04
40GO:0016050: vesicle organization7.36E-04
41GO:0007017: microtubule-based process9.08E-04
42GO:0009768: photosynthesis, light harvesting in photosystem I9.08E-04
43GO:0010371: regulation of gibberellin biosynthetic process1.05E-03
44GO:0009152: purine ribonucleotide biosynthetic process1.05E-03
45GO:0046653: tetrahydrofolate metabolic process1.05E-03
46GO:0080170: hydrogen peroxide transmembrane transport1.05E-03
47GO:0009800: cinnamic acid biosynthetic process1.05E-03
48GO:0009052: pentose-phosphate shunt, non-oxidative branch1.05E-03
49GO:1901332: negative regulation of lateral root development1.05E-03
50GO:0043572: plastid fission1.05E-03
51GO:0010222: stem vascular tissue pattern formation1.40E-03
52GO:0009765: photosynthesis, light harvesting1.40E-03
53GO:0045727: positive regulation of translation1.40E-03
54GO:0015994: chlorophyll metabolic process1.40E-03
55GO:0030104: water homeostasis1.40E-03
56GO:0006546: glycine catabolic process1.40E-03
57GO:0031365: N-terminal protein amino acid modification1.78E-03
58GO:0006461: protein complex assembly1.78E-03
59GO:0009107: lipoate biosynthetic process1.78E-03
60GO:0030308: negative regulation of cell growth1.78E-03
61GO:0006564: L-serine biosynthetic process1.78E-03
62GO:0010236: plastoquinone biosynthetic process1.78E-03
63GO:0045038: protein import into chloroplast thylakoid membrane1.78E-03
64GO:0048497: maintenance of floral organ identity1.78E-03
65GO:0019252: starch biosynthetic process1.85E-03
66GO:0000302: response to reactive oxygen species1.98E-03
67GO:0010304: PSII associated light-harvesting complex II catabolic process2.19E-03
68GO:0006751: glutathione catabolic process2.19E-03
69GO:0000470: maturation of LSU-rRNA2.19E-03
70GO:0006655: phosphatidylglycerol biosynthetic process2.19E-03
71GO:0006559: L-phenylalanine catabolic process2.19E-03
72GO:0006086: acetyl-CoA biosynthetic process from pyruvate2.19E-03
73GO:0010337: regulation of salicylic acid metabolic process2.19E-03
74GO:0006561: proline biosynthetic process2.19E-03
75GO:0010019: chloroplast-nucleus signaling pathway2.63E-03
76GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)2.63E-03
77GO:0010189: vitamin E biosynthetic process2.63E-03
78GO:0009409: response to cold3.02E-03
79GO:0009395: phospholipid catabolic process3.09E-03
80GO:0006614: SRP-dependent cotranslational protein targeting to membrane3.09E-03
81GO:0050829: defense response to Gram-negative bacterium3.09E-03
82GO:0009645: response to low light intensity stimulus3.09E-03
83GO:0006400: tRNA modification3.09E-03
84GO:0048564: photosystem I assembly3.59E-03
85GO:0008610: lipid biosynthetic process3.59E-03
86GO:0005978: glycogen biosynthetic process3.59E-03
87GO:0030091: protein repair3.59E-03
88GO:0032508: DNA duplex unwinding3.59E-03
89GO:0010311: lateral root formation3.89E-03
90GO:0015996: chlorophyll catabolic process4.10E-03
91GO:0009657: plastid organization4.10E-03
92GO:0032544: plastid translation4.10E-03
93GO:0009631: cold acclimation4.28E-03
94GO:0009051: pentose-phosphate shunt, oxidative branch4.65E-03
95GO:0000373: Group II intron splicing4.65E-03
96GO:0009637: response to blue light4.69E-03
97GO:0005982: starch metabolic process5.21E-03
98GO:0010205: photoinhibition5.21E-03
99GO:0006032: chitin catabolic process5.80E-03
100GO:0009688: abscisic acid biosynthetic process5.80E-03
101GO:0048829: root cap development5.80E-03
102GO:0048765: root hair cell differentiation6.41E-03
103GO:0000038: very long-chain fatty acid metabolic process6.41E-03
104GO:0008285: negative regulation of cell proliferation6.41E-03
105GO:0009073: aromatic amino acid family biosynthetic process6.41E-03
106GO:0009750: response to fructose6.41E-03
107GO:0009416: response to light stimulus7.09E-03
108GO:0009718: anthocyanin-containing compound biosynthetic process7.70E-03
109GO:0009767: photosynthetic electron transport chain7.70E-03
110GO:0010588: cotyledon vascular tissue pattern formation7.70E-03
111GO:0010628: positive regulation of gene expression7.70E-03
112GO:0006006: glucose metabolic process7.70E-03
113GO:0006364: rRNA processing8.14E-03
114GO:0010143: cutin biosynthetic process8.37E-03
115GO:0010207: photosystem II assembly8.37E-03
116GO:0010020: chloroplast fission8.37E-03
117GO:0010053: root epidermal cell differentiation9.07E-03
118GO:0009225: nucleotide-sugar metabolic process9.07E-03
119GO:0009825: multidimensional cell growth9.07E-03
120GO:0010167: response to nitrate9.07E-03
121GO:0006636: unsaturated fatty acid biosynthetic process9.79E-03
122GO:0010073: meristem maintenance1.13E-02
123GO:0006825: copper ion transport1.13E-02
124GO:0051302: regulation of cell division1.13E-02
125GO:0009695: jasmonic acid biosynthetic process1.13E-02
126GO:0009269: response to desiccation1.21E-02
127GO:0031408: oxylipin biosynthetic process1.21E-02
128GO:0003333: amino acid transmembrane transport1.21E-02
129GO:0016998: cell wall macromolecule catabolic process1.21E-02
130GO:0035428: hexose transmembrane transport1.29E-02
131GO:0010227: floral organ abscission1.37E-02
132GO:0071369: cellular response to ethylene stimulus1.37E-02
133GO:0009561: megagametogenesis1.45E-02
134GO:0009306: protein secretion1.45E-02
135GO:0042335: cuticle development1.62E-02
136GO:0034220: ion transmembrane transport1.62E-02
137GO:0046323: glucose import1.71E-02
138GO:0009958: positive gravitropism1.71E-02
139GO:0010182: sugar mediated signaling pathway1.71E-02
140GO:0048544: recognition of pollen1.80E-02
141GO:0015986: ATP synthesis coupled proton transport1.80E-02
142GO:0006633: fatty acid biosynthetic process1.83E-02
143GO:0048825: cotyledon development1.89E-02
144GO:0048510: regulation of timing of transition from vegetative to reproductive phase1.99E-02
145GO:0071554: cell wall organization or biogenesis1.99E-02
146GO:0016032: viral process2.08E-02
147GO:0042128: nitrate assimilation2.80E-02
148GO:0048573: photoperiodism, flowering2.90E-02
149GO:0030244: cellulose biosynthetic process3.12E-02
150GO:0045893: positive regulation of transcription, DNA-templated3.29E-02
151GO:0010218: response to far red light3.35E-02
152GO:0006865: amino acid transport3.58E-02
153GO:0009853: photorespiration3.69E-02
154GO:0045087: innate immune response3.69E-02
155GO:0034599: cellular response to oxidative stress3.81E-02
156GO:0080167: response to karrikin3.86E-02
157GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.99E-02
158GO:0030001: metal ion transport4.05E-02
159GO:0009926: auxin polar transport4.42E-02
160GO:0009640: photomorphogenesis4.42E-02
161GO:0010114: response to red light4.42E-02
162GO:0009651: response to salt stress4.65E-02
163GO:0009644: response to high light intensity4.68E-02
164GO:0006855: drug transmembrane transport4.93E-02
RankGO TermAdjusted P value
1GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
2GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
3GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
4GO:0010301: xanthoxin dehydrogenase activity0.00E+00
5GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
6GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
7GO:0005528: FK506 binding4.66E-05
8GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity2.02E-04
9GO:0050139: nicotinate-N-glucosyltransferase activity2.02E-04
10GO:0030794: (S)-coclaurine-N-methyltransferase activity2.02E-04
11GO:0009496: plastoquinol--plastocyanin reductase activity2.02E-04
12GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity2.02E-04
13GO:0042586: peptide deformylase activity2.02E-04
14GO:0004321: fatty-acyl-CoA synthase activity2.02E-04
15GO:0045485: omega-6 fatty acid desaturase activity2.02E-04
16GO:0034256: chlorophyll(ide) b reductase activity2.02E-04
17GO:0015245: fatty acid transporter activity2.02E-04
18GO:0016168: chlorophyll binding3.24E-04
19GO:0019843: rRNA binding3.73E-04
20GO:0047746: chlorophyllase activity4.52E-04
21GO:0003839: gamma-glutamylcyclotransferase activity4.52E-04
22GO:0004617: phosphoglycerate dehydrogenase activity4.52E-04
23GO:0033201: alpha-1,4-glucan synthase activity4.52E-04
24GO:0003844: 1,4-alpha-glucan branching enzyme activity4.52E-04
25GO:0008266: poly(U) RNA binding6.01E-04
26GO:0008864: formyltetrahydrofolate deformylase activity7.36E-04
27GO:0043169: cation binding7.36E-04
28GO:0004373: glycogen (starch) synthase activity7.36E-04
29GO:0016992: lipoate synthase activity7.36E-04
30GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity7.36E-04
31GO:0045548: phenylalanine ammonia-lyase activity7.36E-04
32GO:0004751: ribose-5-phosphate isomerase activity7.36E-04
33GO:0016742: hydroxymethyl-, formyl- and related transferase activity7.36E-04
34GO:0016787: hydrolase activity7.45E-04
35GO:0031409: pigment binding7.47E-04
36GO:0003755: peptidyl-prolyl cis-trans isomerase activity9.61E-04
37GO:0001872: (1->3)-beta-D-glucan binding1.05E-03
38GO:0016851: magnesium chelatase activity1.05E-03
39GO:0008168: methyltransferase activity1.12E-03
40GO:0010011: auxin binding1.40E-03
41GO:0004345: glucose-6-phosphate dehydrogenase activity1.40E-03
42GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity1.40E-03
43GO:0010328: auxin influx transmembrane transporter activity1.40E-03
44GO:0009011: starch synthase activity1.40E-03
45GO:0043495: protein anchor1.40E-03
46GO:0050378: UDP-glucuronate 4-epimerase activity1.40E-03
47GO:0042277: peptide binding1.40E-03
48GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity1.40E-03
49GO:0016746: transferase activity, transferring acyl groups1.85E-03
50GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity2.19E-03
51GO:0004130: cytochrome-c peroxidase activity2.19E-03
52GO:0035673: oligopeptide transmembrane transporter activity2.19E-03
53GO:0004366: glycerol-3-phosphate O-acyltransferase activity2.19E-03
54GO:0016688: L-ascorbate peroxidase activity2.19E-03
55GO:0033743: peptide-methionine (R)-S-oxide reductase activity2.63E-03
56GO:0016597: amino acid binding2.69E-03
57GO:0019899: enzyme binding3.09E-03
58GO:0030247: polysaccharide binding3.35E-03
59GO:0004033: aldo-keto reductase (NADP) activity3.59E-03
60GO:0043022: ribosome binding3.59E-03
61GO:0016207: 4-coumarate-CoA ligase activity4.65E-03
62GO:0004568: chitinase activity5.80E-03
63GO:0016788: hydrolase activity, acting on ester bonds6.38E-03
64GO:0015386: potassium:proton antiporter activity6.41E-03
65GO:0051537: 2 iron, 2 sulfur cluster binding6.53E-03
66GO:0015198: oligopeptide transporter activity7.04E-03
67GO:0031072: heat shock protein binding7.70E-03
68GO:0004022: alcohol dehydrogenase (NAD) activity7.70E-03
69GO:0102336: 3-oxo-arachidoyl-CoA synthase activity9.79E-03
70GO:0102337: 3-oxo-cerotoyl-CoA synthase activity9.79E-03
71GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity9.79E-03
72GO:0015079: potassium ion transmembrane transporter activity1.13E-02
73GO:0004176: ATP-dependent peptidase activity1.21E-02
74GO:0022891: substrate-specific transmembrane transporter activity1.37E-02
75GO:0005525: GTP binding1.51E-02
76GO:0046933: proton-transporting ATP synthase activity, rotational mechanism1.71E-02
77GO:0005355: glucose transmembrane transporter activity1.80E-02
78GO:0050662: coenzyme binding1.80E-02
79GO:0005515: protein binding2.07E-02
80GO:0016791: phosphatase activity2.28E-02
81GO:0003824: catalytic activity2.36E-02
82GO:0008483: transaminase activity2.38E-02
83GO:0005200: structural constituent of cytoskeleton2.38E-02
84GO:0016413: O-acetyltransferase activity2.48E-02
85GO:0042626: ATPase activity, coupled to transmembrane movement of substances2.56E-02
86GO:0015250: water channel activity2.58E-02
87GO:0008757: S-adenosylmethionine-dependent methyltransferase activity3.01E-02
88GO:0016491: oxidoreductase activity3.08E-02
89GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity3.12E-02
90GO:0015238: drug transmembrane transporter activity3.23E-02
91GO:0004222: metalloendopeptidase activity3.35E-02
92GO:0003746: translation elongation factor activity3.69E-02
93GO:0046872: metal ion binding3.70E-02
94GO:0003993: acid phosphatase activity3.81E-02
95GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.90E-02
96GO:0030246: carbohydrate binding4.00E-02
97GO:0050661: NADP binding4.05E-02
98GO:0051539: 4 iron, 4 sulfur cluster binding4.05E-02
99GO:0015293: symporter activity4.80E-02
100GO:0004871: signal transducer activity4.82E-02
101GO:0042803: protein homodimerization activity4.82E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast3.21E-36
2GO:0009535: chloroplast thylakoid membrane1.09E-21
3GO:0009534: chloroplast thylakoid2.34E-21
4GO:0009941: chloroplast envelope4.13E-20
5GO:0009570: chloroplast stroma2.21E-19
6GO:0009579: thylakoid2.80E-13
7GO:0009543: chloroplast thylakoid lumen1.92E-10
8GO:0031977: thylakoid lumen4.02E-09
9GO:0009523: photosystem II1.64E-04
10GO:0009501: amyloplast1.67E-04
11GO:0009782: photosystem I antenna complex2.02E-04
12GO:0043674: columella2.02E-04
13GO:0009515: granal stacked thylakoid2.02E-04
14GO:0031969: chloroplast membrane3.13E-04
15GO:0010287: plastoglobule3.42E-04
16GO:0030095: chloroplast photosystem II6.01E-04
17GO:0030076: light-harvesting complex6.71E-04
18GO:0009897: external side of plasma membrane7.36E-04
19GO:0010007: magnesium chelatase complex7.36E-04
20GO:0009654: photosystem II oxygen evolving complex9.08E-04
21GO:0042651: thylakoid membrane9.08E-04
22GO:0015630: microtubule cytoskeleton1.05E-03
23GO:0030286: dynein complex1.40E-03
24GO:0009512: cytochrome b6f complex1.78E-03
25GO:0009706: chloroplast inner membrane1.79E-03
26GO:0019898: extrinsic component of membrane1.85E-03
27GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)2.19E-03
28GO:0030529: intracellular ribonucleoprotein complex2.85E-03
29GO:0009986: cell surface3.09E-03
30GO:0009533: chloroplast stromal thylakoid3.09E-03
31GO:0042807: central vacuole3.09E-03
32GO:0005786: signal recognition particle, endoplasmic reticulum targeting4.10E-03
33GO:0016020: membrane4.47E-03
34GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.65E-03
35GO:0055028: cortical microtubule5.80E-03
36GO:0032040: small-subunit processome7.04E-03
37GO:0009508: plastid chromosome7.70E-03
38GO:0000312: plastid small ribosomal subunit8.37E-03
39GO:0005875: microtubule associated complex9.79E-03
40GO:0009522: photosystem I1.80E-02
41GO:0016021: integral component of membrane2.13E-02
42GO:0032580: Golgi cisterna membrane2.28E-02
43GO:0010319: stromule2.38E-02
44GO:0009295: nucleoid2.38E-02
45GO:0009707: chloroplast outer membrane3.12E-02
46GO:0005874: microtubule3.73E-02
Gene type



Gene DE type