GO Enrichment Analysis of Co-expressed Genes with
AT1G48450
Rank | GO Term | Adjusted P value |
---|---|---|
1 | GO:0098586: cellular response to virus | 0.00E+00 |
2 | GO:0090470: shoot organ boundary specification | 0.00E+00 |
3 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
4 | GO:0017009: protein-phycocyanobilin linkage | 0.00E+00 |
5 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
6 | GO:0010027: thylakoid membrane organization | 1.54E-08 |
7 | GO:0010196: nonphotochemical quenching | 1.92E-06 |
8 | GO:0015979: photosynthesis | 6.17E-06 |
9 | GO:0009773: photosynthetic electron transport in photosystem I | 1.40E-05 |
10 | GO:0010021: amylopectin biosynthetic process | 3.00E-05 |
11 | GO:0042549: photosystem II stabilization | 7.11E-05 |
12 | GO:0009913: epidermal cell differentiation | 7.11E-05 |
13 | GO:0009772: photosynthetic electron transport in photosystem II | 1.31E-04 |
14 | GO:0008152: metabolic process | 1.43E-04 |
15 | GO:0006605: protein targeting | 1.67E-04 |
16 | GO:0090548: response to nitrate starvation | 2.02E-04 |
17 | GO:0034337: RNA folding | 2.02E-04 |
18 | GO:0071588: hydrogen peroxide mediated signaling pathway | 2.02E-04 |
19 | GO:0043489: RNA stabilization | 2.02E-04 |
20 | GO:1902025: nitrate import | 2.02E-04 |
21 | GO:1904966: positive regulation of vitamin E biosynthetic process | 2.02E-04 |
22 | GO:0000481: maturation of 5S rRNA | 2.02E-04 |
23 | GO:1904964: positive regulation of phytol biosynthetic process | 2.02E-04 |
24 | GO:0080051: cutin transport | 2.02E-04 |
25 | GO:0033481: galacturonate biosynthetic process | 2.02E-04 |
26 | GO:0043686: co-translational protein modification | 2.02E-04 |
27 | GO:0009735: response to cytokinin | 3.37E-04 |
28 | GO:0015995: chlorophyll biosynthetic process | 3.73E-04 |
29 | GO:0018298: protein-chromophore linkage | 4.26E-04 |
30 | GO:0046741: transport of virus in host, tissue to tissue | 4.52E-04 |
31 | GO:0043255: regulation of carbohydrate biosynthetic process | 4.52E-04 |
32 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 4.52E-04 |
33 | GO:0010115: regulation of abscisic acid biosynthetic process | 4.52E-04 |
34 | GO:0015908: fatty acid transport | 4.52E-04 |
35 | GO:0001736: establishment of planar polarity | 4.52E-04 |
36 | GO:0016024: CDP-diacylglycerol biosynthetic process | 4.70E-04 |
37 | GO:0032259: methylation | 5.89E-04 |
38 | GO:0090391: granum assembly | 7.36E-04 |
39 | GO:0006518: peptide metabolic process | 7.36E-04 |
40 | GO:0016050: vesicle organization | 7.36E-04 |
41 | GO:0007017: microtubule-based process | 9.08E-04 |
42 | GO:0009768: photosynthesis, light harvesting in photosystem I | 9.08E-04 |
43 | GO:0010371: regulation of gibberellin biosynthetic process | 1.05E-03 |
44 | GO:0009152: purine ribonucleotide biosynthetic process | 1.05E-03 |
45 | GO:0046653: tetrahydrofolate metabolic process | 1.05E-03 |
46 | GO:0080170: hydrogen peroxide transmembrane transport | 1.05E-03 |
47 | GO:0009800: cinnamic acid biosynthetic process | 1.05E-03 |
48 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 1.05E-03 |
49 | GO:1901332: negative regulation of lateral root development | 1.05E-03 |
50 | GO:0043572: plastid fission | 1.05E-03 |
51 | GO:0010222: stem vascular tissue pattern formation | 1.40E-03 |
52 | GO:0009765: photosynthesis, light harvesting | 1.40E-03 |
53 | GO:0045727: positive regulation of translation | 1.40E-03 |
54 | GO:0015994: chlorophyll metabolic process | 1.40E-03 |
55 | GO:0030104: water homeostasis | 1.40E-03 |
56 | GO:0006546: glycine catabolic process | 1.40E-03 |
57 | GO:0031365: N-terminal protein amino acid modification | 1.78E-03 |
58 | GO:0006461: protein complex assembly | 1.78E-03 |
59 | GO:0009107: lipoate biosynthetic process | 1.78E-03 |
60 | GO:0030308: negative regulation of cell growth | 1.78E-03 |
61 | GO:0006564: L-serine biosynthetic process | 1.78E-03 |
62 | GO:0010236: plastoquinone biosynthetic process | 1.78E-03 |
63 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.78E-03 |
64 | GO:0048497: maintenance of floral organ identity | 1.78E-03 |
65 | GO:0019252: starch biosynthetic process | 1.85E-03 |
66 | GO:0000302: response to reactive oxygen species | 1.98E-03 |
67 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 2.19E-03 |
68 | GO:0006751: glutathione catabolic process | 2.19E-03 |
69 | GO:0000470: maturation of LSU-rRNA | 2.19E-03 |
70 | GO:0006655: phosphatidylglycerol biosynthetic process | 2.19E-03 |
71 | GO:0006559: L-phenylalanine catabolic process | 2.19E-03 |
72 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 2.19E-03 |
73 | GO:0010337: regulation of salicylic acid metabolic process | 2.19E-03 |
74 | GO:0006561: proline biosynthetic process | 2.19E-03 |
75 | GO:0010019: chloroplast-nucleus signaling pathway | 2.63E-03 |
76 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.63E-03 |
77 | GO:0010189: vitamin E biosynthetic process | 2.63E-03 |
78 | GO:0009409: response to cold | 3.02E-03 |
79 | GO:0009395: phospholipid catabolic process | 3.09E-03 |
80 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 3.09E-03 |
81 | GO:0050829: defense response to Gram-negative bacterium | 3.09E-03 |
82 | GO:0009645: response to low light intensity stimulus | 3.09E-03 |
83 | GO:0006400: tRNA modification | 3.09E-03 |
84 | GO:0048564: photosystem I assembly | 3.59E-03 |
85 | GO:0008610: lipid biosynthetic process | 3.59E-03 |
86 | GO:0005978: glycogen biosynthetic process | 3.59E-03 |
87 | GO:0030091: protein repair | 3.59E-03 |
88 | GO:0032508: DNA duplex unwinding | 3.59E-03 |
89 | GO:0010311: lateral root formation | 3.89E-03 |
90 | GO:0015996: chlorophyll catabolic process | 4.10E-03 |
91 | GO:0009657: plastid organization | 4.10E-03 |
92 | GO:0032544: plastid translation | 4.10E-03 |
93 | GO:0009631: cold acclimation | 4.28E-03 |
94 | GO:0009051: pentose-phosphate shunt, oxidative branch | 4.65E-03 |
95 | GO:0000373: Group II intron splicing | 4.65E-03 |
96 | GO:0009637: response to blue light | 4.69E-03 |
97 | GO:0005982: starch metabolic process | 5.21E-03 |
98 | GO:0010205: photoinhibition | 5.21E-03 |
99 | GO:0006032: chitin catabolic process | 5.80E-03 |
100 | GO:0009688: abscisic acid biosynthetic process | 5.80E-03 |
101 | GO:0048829: root cap development | 5.80E-03 |
102 | GO:0048765: root hair cell differentiation | 6.41E-03 |
103 | GO:0000038: very long-chain fatty acid metabolic process | 6.41E-03 |
104 | GO:0008285: negative regulation of cell proliferation | 6.41E-03 |
105 | GO:0009073: aromatic amino acid family biosynthetic process | 6.41E-03 |
106 | GO:0009750: response to fructose | 6.41E-03 |
107 | GO:0009416: response to light stimulus | 7.09E-03 |
108 | GO:0009718: anthocyanin-containing compound biosynthetic process | 7.70E-03 |
109 | GO:0009767: photosynthetic electron transport chain | 7.70E-03 |
110 | GO:0010588: cotyledon vascular tissue pattern formation | 7.70E-03 |
111 | GO:0010628: positive regulation of gene expression | 7.70E-03 |
112 | GO:0006006: glucose metabolic process | 7.70E-03 |
113 | GO:0006364: rRNA processing | 8.14E-03 |
114 | GO:0010143: cutin biosynthetic process | 8.37E-03 |
115 | GO:0010207: photosystem II assembly | 8.37E-03 |
116 | GO:0010020: chloroplast fission | 8.37E-03 |
117 | GO:0010053: root epidermal cell differentiation | 9.07E-03 |
118 | GO:0009225: nucleotide-sugar metabolic process | 9.07E-03 |
119 | GO:0009825: multidimensional cell growth | 9.07E-03 |
120 | GO:0010167: response to nitrate | 9.07E-03 |
121 | GO:0006636: unsaturated fatty acid biosynthetic process | 9.79E-03 |
122 | GO:0010073: meristem maintenance | 1.13E-02 |
123 | GO:0006825: copper ion transport | 1.13E-02 |
124 | GO:0051302: regulation of cell division | 1.13E-02 |
125 | GO:0009695: jasmonic acid biosynthetic process | 1.13E-02 |
126 | GO:0009269: response to desiccation | 1.21E-02 |
127 | GO:0031408: oxylipin biosynthetic process | 1.21E-02 |
128 | GO:0003333: amino acid transmembrane transport | 1.21E-02 |
129 | GO:0016998: cell wall macromolecule catabolic process | 1.21E-02 |
130 | GO:0035428: hexose transmembrane transport | 1.29E-02 |
131 | GO:0010227: floral organ abscission | 1.37E-02 |
132 | GO:0071369: cellular response to ethylene stimulus | 1.37E-02 |
133 | GO:0009561: megagametogenesis | 1.45E-02 |
134 | GO:0009306: protein secretion | 1.45E-02 |
135 | GO:0042335: cuticle development | 1.62E-02 |
136 | GO:0034220: ion transmembrane transport | 1.62E-02 |
137 | GO:0046323: glucose import | 1.71E-02 |
138 | GO:0009958: positive gravitropism | 1.71E-02 |
139 | GO:0010182: sugar mediated signaling pathway | 1.71E-02 |
140 | GO:0048544: recognition of pollen | 1.80E-02 |
141 | GO:0015986: ATP synthesis coupled proton transport | 1.80E-02 |
142 | GO:0006633: fatty acid biosynthetic process | 1.83E-02 |
143 | GO:0048825: cotyledon development | 1.89E-02 |
144 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 1.99E-02 |
145 | GO:0071554: cell wall organization or biogenesis | 1.99E-02 |
146 | GO:0016032: viral process | 2.08E-02 |
147 | GO:0042128: nitrate assimilation | 2.80E-02 |
148 | GO:0048573: photoperiodism, flowering | 2.90E-02 |
149 | GO:0030244: cellulose biosynthetic process | 3.12E-02 |
150 | GO:0045893: positive regulation of transcription, DNA-templated | 3.29E-02 |
151 | GO:0010218: response to far red light | 3.35E-02 |
152 | GO:0006865: amino acid transport | 3.58E-02 |
153 | GO:0009853: photorespiration | 3.69E-02 |
154 | GO:0045087: innate immune response | 3.69E-02 |
155 | GO:0034599: cellular response to oxidative stress | 3.81E-02 |
156 | GO:0080167: response to karrikin | 3.86E-02 |
157 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 3.99E-02 |
158 | GO:0030001: metal ion transport | 4.05E-02 |
159 | GO:0009926: auxin polar transport | 4.42E-02 |
160 | GO:0009640: photomorphogenesis | 4.42E-02 |
161 | GO:0010114: response to red light | 4.42E-02 |
162 | GO:0009651: response to salt stress | 4.65E-02 |
163 | GO:0009644: response to high light intensity | 4.68E-02 |
164 | GO:0006855: drug transmembrane transport | 4.93E-02 |
Rank | GO Term | Adjusted P value |
---|---|---|
1 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
2 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
3 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
4 | GO:0010301: xanthoxin dehydrogenase activity | 0.00E+00 |
5 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
6 | GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity | 0.00E+00 |
7 | GO:0005528: FK506 binding | 4.66E-05 |
8 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 2.02E-04 |
9 | GO:0050139: nicotinate-N-glucosyltransferase activity | 2.02E-04 |
10 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 2.02E-04 |
11 | GO:0009496: plastoquinol--plastocyanin reductase activity | 2.02E-04 |
12 | GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity | 2.02E-04 |
13 | GO:0042586: peptide deformylase activity | 2.02E-04 |
14 | GO:0004321: fatty-acyl-CoA synthase activity | 2.02E-04 |
15 | GO:0045485: omega-6 fatty acid desaturase activity | 2.02E-04 |
16 | GO:0034256: chlorophyll(ide) b reductase activity | 2.02E-04 |
17 | GO:0015245: fatty acid transporter activity | 2.02E-04 |
18 | GO:0016168: chlorophyll binding | 3.24E-04 |
19 | GO:0019843: rRNA binding | 3.73E-04 |
20 | GO:0047746: chlorophyllase activity | 4.52E-04 |
21 | GO:0003839: gamma-glutamylcyclotransferase activity | 4.52E-04 |
22 | GO:0004617: phosphoglycerate dehydrogenase activity | 4.52E-04 |
23 | GO:0033201: alpha-1,4-glucan synthase activity | 4.52E-04 |
24 | GO:0003844: 1,4-alpha-glucan branching enzyme activity | 4.52E-04 |
25 | GO:0008266: poly(U) RNA binding | 6.01E-04 |
26 | GO:0008864: formyltetrahydrofolate deformylase activity | 7.36E-04 |
27 | GO:0043169: cation binding | 7.36E-04 |
28 | GO:0004373: glycogen (starch) synthase activity | 7.36E-04 |
29 | GO:0016992: lipoate synthase activity | 7.36E-04 |
30 | GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity | 7.36E-04 |
31 | GO:0045548: phenylalanine ammonia-lyase activity | 7.36E-04 |
32 | GO:0004751: ribose-5-phosphate isomerase activity | 7.36E-04 |
33 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 7.36E-04 |
34 | GO:0016787: hydrolase activity | 7.45E-04 |
35 | GO:0031409: pigment binding | 7.47E-04 |
36 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 9.61E-04 |
37 | GO:0001872: (1->3)-beta-D-glucan binding | 1.05E-03 |
38 | GO:0016851: magnesium chelatase activity | 1.05E-03 |
39 | GO:0008168: methyltransferase activity | 1.12E-03 |
40 | GO:0010011: auxin binding | 1.40E-03 |
41 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 1.40E-03 |
42 | GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity | 1.40E-03 |
43 | GO:0010328: auxin influx transmembrane transporter activity | 1.40E-03 |
44 | GO:0009011: starch synthase activity | 1.40E-03 |
45 | GO:0043495: protein anchor | 1.40E-03 |
46 | GO:0050378: UDP-glucuronate 4-epimerase activity | 1.40E-03 |
47 | GO:0042277: peptide binding | 1.40E-03 |
48 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 1.40E-03 |
49 | GO:0016746: transferase activity, transferring acyl groups | 1.85E-03 |
50 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 2.19E-03 |
51 | GO:0004130: cytochrome-c peroxidase activity | 2.19E-03 |
52 | GO:0035673: oligopeptide transmembrane transporter activity | 2.19E-03 |
53 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 2.19E-03 |
54 | GO:0016688: L-ascorbate peroxidase activity | 2.19E-03 |
55 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 2.63E-03 |
56 | GO:0016597: amino acid binding | 2.69E-03 |
57 | GO:0019899: enzyme binding | 3.09E-03 |
58 | GO:0030247: polysaccharide binding | 3.35E-03 |
59 | GO:0004033: aldo-keto reductase (NADP) activity | 3.59E-03 |
60 | GO:0043022: ribosome binding | 3.59E-03 |
61 | GO:0016207: 4-coumarate-CoA ligase activity | 4.65E-03 |
62 | GO:0004568: chitinase activity | 5.80E-03 |
63 | GO:0016788: hydrolase activity, acting on ester bonds | 6.38E-03 |
64 | GO:0015386: potassium:proton antiporter activity | 6.41E-03 |
65 | GO:0051537: 2 iron, 2 sulfur cluster binding | 6.53E-03 |
66 | GO:0015198: oligopeptide transporter activity | 7.04E-03 |
67 | GO:0031072: heat shock protein binding | 7.70E-03 |
68 | GO:0004022: alcohol dehydrogenase (NAD) activity | 7.70E-03 |
69 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 9.79E-03 |
70 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 9.79E-03 |
71 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 9.79E-03 |
72 | GO:0015079: potassium ion transmembrane transporter activity | 1.13E-02 |
73 | GO:0004176: ATP-dependent peptidase activity | 1.21E-02 |
74 | GO:0022891: substrate-specific transmembrane transporter activity | 1.37E-02 |
75 | GO:0005525: GTP binding | 1.51E-02 |
76 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 1.71E-02 |
77 | GO:0005355: glucose transmembrane transporter activity | 1.80E-02 |
78 | GO:0050662: coenzyme binding | 1.80E-02 |
79 | GO:0005515: protein binding | 2.07E-02 |
80 | GO:0016791: phosphatase activity | 2.28E-02 |
81 | GO:0003824: catalytic activity | 2.36E-02 |
82 | GO:0008483: transaminase activity | 2.38E-02 |
83 | GO:0005200: structural constituent of cytoskeleton | 2.38E-02 |
84 | GO:0016413: O-acetyltransferase activity | 2.48E-02 |
85 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 2.56E-02 |
86 | GO:0015250: water channel activity | 2.58E-02 |
87 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 3.01E-02 |
88 | GO:0016491: oxidoreductase activity | 3.08E-02 |
89 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 3.12E-02 |
90 | GO:0015238: drug transmembrane transporter activity | 3.23E-02 |
91 | GO:0004222: metalloendopeptidase activity | 3.35E-02 |
92 | GO:0003746: translation elongation factor activity | 3.69E-02 |
93 | GO:0046872: metal ion binding | 3.70E-02 |
94 | GO:0003993: acid phosphatase activity | 3.81E-02 |
95 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 3.90E-02 |
96 | GO:0030246: carbohydrate binding | 4.00E-02 |
97 | GO:0050661: NADP binding | 4.05E-02 |
98 | GO:0051539: 4 iron, 4 sulfur cluster binding | 4.05E-02 |
99 | GO:0015293: symporter activity | 4.80E-02 |
100 | GO:0004871: signal transducer activity | 4.82E-02 |
101 | GO:0042803: protein homodimerization activity | 4.82E-02 |
Rank | GO Term | Adjusted P value |
---|---|---|
1 | GO:0009507: chloroplast | 3.21E-36 |
2 | GO:0009535: chloroplast thylakoid membrane | 1.09E-21 |
3 | GO:0009534: chloroplast thylakoid | 2.34E-21 |
4 | GO:0009941: chloroplast envelope | 4.13E-20 |
5 | GO:0009570: chloroplast stroma | 2.21E-19 |
6 | GO:0009579: thylakoid | 2.80E-13 |
7 | GO:0009543: chloroplast thylakoid lumen | 1.92E-10 |
8 | GO:0031977: thylakoid lumen | 4.02E-09 |
9 | GO:0009523: photosystem II | 1.64E-04 |
10 | GO:0009501: amyloplast | 1.67E-04 |
11 | GO:0009782: photosystem I antenna complex | 2.02E-04 |
12 | GO:0043674: columella | 2.02E-04 |
13 | GO:0009515: granal stacked thylakoid | 2.02E-04 |
14 | GO:0031969: chloroplast membrane | 3.13E-04 |
15 | GO:0010287: plastoglobule | 3.42E-04 |
16 | GO:0030095: chloroplast photosystem II | 6.01E-04 |
17 | GO:0030076: light-harvesting complex | 6.71E-04 |
18 | GO:0009897: external side of plasma membrane | 7.36E-04 |
19 | GO:0010007: magnesium chelatase complex | 7.36E-04 |
20 | GO:0009654: photosystem II oxygen evolving complex | 9.08E-04 |
21 | GO:0042651: thylakoid membrane | 9.08E-04 |
22 | GO:0015630: microtubule cytoskeleton | 1.05E-03 |
23 | GO:0030286: dynein complex | 1.40E-03 |
24 | GO:0009512: cytochrome b6f complex | 1.78E-03 |
25 | GO:0009706: chloroplast inner membrane | 1.79E-03 |
26 | GO:0019898: extrinsic component of membrane | 1.85E-03 |
27 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 2.19E-03 |
28 | GO:0030529: intracellular ribonucleoprotein complex | 2.85E-03 |
29 | GO:0009986: cell surface | 3.09E-03 |
30 | GO:0009533: chloroplast stromal thylakoid | 3.09E-03 |
31 | GO:0042807: central vacuole | 3.09E-03 |
32 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 4.10E-03 |
33 | GO:0016020: membrane | 4.47E-03 |
34 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 4.65E-03 |
35 | GO:0055028: cortical microtubule | 5.80E-03 |
36 | GO:0032040: small-subunit processome | 7.04E-03 |
37 | GO:0009508: plastid chromosome | 7.70E-03 |
38 | GO:0000312: plastid small ribosomal subunit | 8.37E-03 |
39 | GO:0005875: microtubule associated complex | 9.79E-03 |
40 | GO:0009522: photosystem I | 1.80E-02 |
41 | GO:0016021: integral component of membrane | 2.13E-02 |
42 | GO:0032580: Golgi cisterna membrane | 2.28E-02 |
43 | GO:0010319: stromule | 2.38E-02 |
44 | GO:0009295: nucleoid | 2.38E-02 |
45 | GO:0009707: chloroplast outer membrane | 3.12E-02 |
46 | GO:0005874: microtubule | 3.73E-02 |