co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G48350

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
2	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
3	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
4	GO:0061635: regulation of protein complex stability	0.00E+00
5	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
6	GO:0042407: cristae formation	0.00E+00
7	GO:0016553: base conversion or substitution editing	0.00E+00
8	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
9	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
10	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
11	GO:0042493: response to drug	0.00E+00
12	GO:0042371: vitamin K biosynthetic process	0.00E+00
13	GO:0006399: tRNA metabolic process	0.00E+00
14	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
15	GO:0070125: mitochondrial translational elongation	0.00E+00
16	GO:0002184: cytoplasmic translational termination	0.00E+00
17	GO:0006412: translation	8.96E-18
18	GO:0032544: plastid translation	1.34E-11
19	GO:0009658: chloroplast organization	5.18E-11
20	GO:0015979: photosynthesis	3.96E-10
21	GO:0042254: ribosome biogenesis	1.03E-09
22	GO:0009735: response to cytokinin	2.64E-08
23	GO:0015995: chlorophyll biosynthetic process	3.38E-07
24	GO:0071482: cellular response to light stimulus	1.69E-05
25	GO:0006518: peptide metabolic process	1.97E-05
26	GO:0010027: thylakoid membrane organization	8.95E-05
27	GO:0010207: photosystem II assembly	9.45E-05
28	GO:0010190: cytochrome b6f complex assembly	1.74E-04
29	GO:0042549: photosystem II stabilization	1.74E-04
30	GO:0042372: phylloquinone biosynthetic process	2.36E-04
31	GO:0010196: nonphotochemical quenching	3.06E-04
32	GO:0043489: RNA stabilization	3.52E-04
33	GO:1904966: positive regulation of vitamin E biosynthetic process	3.52E-04
34	GO:0000481: maturation of 5S rRNA	3.52E-04
35	GO:1904964: positive regulation of phytol biosynthetic process	3.52E-04
36	GO:0034337: RNA folding	3.52E-04
37	GO:0071588: hydrogen peroxide mediated signaling pathway	3.52E-04
38	GO:0000413: protein peptidyl-prolyl isomerization	3.63E-04
39	GO:0045454: cell redox homeostasis	4.34E-04
40	GO:0006779: porphyrin-containing compound biosynthetic process	6.66E-04
41	GO:1902326: positive regulation of chlorophyll biosynthetic process	7.67E-04
42	GO:0034755: iron ion transmembrane transport	7.67E-04
43	GO:0006423: cysteinyl-tRNA aminoacylation	7.67E-04
44	GO:0006568: tryptophan metabolic process	7.67E-04
45	GO:0030388: fructose 1,6-bisphosphate metabolic process	7.67E-04
46	GO:0010270: photosystem II oxygen evolving complex assembly	7.67E-04
47	GO:0043039: tRNA aminoacylation	7.67E-04
48	GO:0006782: protoporphyrinogen IX biosynthetic process	7.77E-04
49	GO:0009773: photosynthetic electron transport in photosystem I	8.95E-04
50	GO:0043085: positive regulation of catalytic activity	8.95E-04
51	GO:0006352: DNA-templated transcription, initiation	8.95E-04
52	GO:0006415: translational termination	8.95E-04
53	GO:0006000: fructose metabolic process	1.24E-03
54	GO:0006954: inflammatory response	1.24E-03
55	GO:0090391: granum assembly	1.24E-03
56	GO:0010581: regulation of starch biosynthetic process	1.24E-03
57	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.24E-03
58	GO:0006241: CTP biosynthetic process	1.79E-03
59	GO:0019048: modulation by virus of host morphology or physiology	1.79E-03
60	GO:0009650: UV protection	1.79E-03
61	GO:0006165: nucleoside diphosphate phosphorylation	1.79E-03
62	GO:0006424: glutamyl-tRNA aminoacylation	1.79E-03
63	GO:0006228: UTP biosynthetic process	1.79E-03
64	GO:0031048: chromatin silencing by small RNA	1.79E-03
65	GO:0010088: phloem development	1.79E-03
66	GO:0016556: mRNA modification	1.79E-03
67	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.79E-03
68	GO:2001141: regulation of RNA biosynthetic process	1.79E-03
69	GO:0006418: tRNA aminoacylation for protein translation	1.98E-03
70	GO:0061077: chaperone-mediated protein folding	2.18E-03
71	GO:0006183: GTP biosynthetic process	2.40E-03
72	GO:0051567: histone H3-K9 methylation	2.40E-03
73	GO:0006021: inositol biosynthetic process	2.40E-03
74	GO:0071483: cellular response to blue light	2.40E-03
75	GO:0006808: regulation of nitrogen utilization	2.40E-03
76	GO:0009411: response to UV	2.60E-03
77	GO:0032543: mitochondrial translation	3.07E-03
78	GO:0006564: L-serine biosynthetic process	3.07E-03
79	GO:0010236: plastoquinone biosynthetic process	3.07E-03
80	GO:0045038: protein import into chloroplast thylakoid membrane	3.07E-03
81	GO:0031365: N-terminal protein amino acid modification	3.07E-03
82	GO:0042335: cuticle development	3.31E-03
83	GO:0006457: protein folding	3.45E-03
84	GO:0016554: cytidine to uridine editing	3.79E-03
85	GO:0006828: manganese ion transport	3.79E-03
86	GO:0032973: amino acid export	3.79E-03
87	GO:0016458: gene silencing	3.79E-03
88	GO:0006014: D-ribose metabolic process	3.79E-03
89	GO:0000470: maturation of LSU-rRNA	3.79E-03
90	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	4.57E-03
91	GO:0009854: oxidative photosynthetic carbon pathway	4.57E-03
92	GO:0010019: chloroplast-nucleus signaling pathway	4.57E-03
93	GO:0010555: response to mannitol	4.57E-03
94	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	5.40E-03
95	GO:0006400: tRNA modification	5.40E-03
96	GO:0009772: photosynthetic electron transport in photosystem II	5.40E-03
97	GO:0043090: amino acid import	5.40E-03
98	GO:0009642: response to light intensity	6.27E-03
99	GO:0042255: ribosome assembly	6.27E-03
100	GO:0006353: DNA-templated transcription, termination	6.27E-03
101	GO:0032508: DNA duplex unwinding	6.27E-03
102	GO:0000105: histidine biosynthetic process	6.27E-03
103	GO:0048564: photosystem I assembly	6.27E-03
104	GO:0019430: removal of superoxide radicals	7.19E-03
105	GO:0009657: plastid organization	7.19E-03
106	GO:0006002: fructose 6-phosphate metabolic process	7.19E-03
107	GO:0009790: embryo development	8.12E-03
108	GO:0010206: photosystem II repair	8.16E-03
109	GO:0080144: amino acid homeostasis	8.16E-03
110	GO:0006783: heme biosynthetic process	8.16E-03
111	GO:0018298: protein-chromophore linkage	8.33E-03
112	GO:0006869: lipid transport	8.56E-03
113	GO:1900865: chloroplast RNA modification	9.17E-03
114	GO:0010380: regulation of chlorophyll biosynthetic process	9.17E-03
115	GO:0043067: regulation of programmed cell death	9.17E-03
116	GO:0009631: cold acclimation	9.64E-03
117	GO:0030422: production of siRNA involved in RNA interference	1.02E-02
118	GO:0045036: protein targeting to chloroplast	1.02E-02
119	GO:0006949: syncytium formation	1.02E-02
120	GO:0009637: response to blue light	1.06E-02
121	GO:0034599: cellular response to oxidative stress	1.11E-02
122	GO:0006816: calcium ion transport	1.13E-02
123	GO:0009073: aromatic amino acid family biosynthetic process	1.13E-02
124	GO:0006879: cellular iron ion homeostasis	1.13E-02
125	GO:0009750: response to fructose	1.13E-02
126	GO:0005983: starch catabolic process	1.25E-02
127	GO:0045037: protein import into chloroplast stroma	1.25E-02
128	GO:0006790: sulfur compound metabolic process	1.25E-02
129	GO:0006006: glucose metabolic process	1.37E-02
130	GO:0010114: response to red light	1.37E-02
131	GO:0006094: gluconeogenesis	1.37E-02
132	GO:0005986: sucrose biosynthetic process	1.37E-02
133	GO:0010020: chloroplast fission	1.49E-02
134	GO:0019253: reductive pentose-phosphate cycle	1.49E-02
135	GO:0090351: seedling development	1.61E-02
136	GO:0046854: phosphatidylinositol phosphorylation	1.61E-02
137	GO:0009793: embryo development ending in seed dormancy	1.64E-02
138	GO:0000027: ribosomal large subunit assembly	1.88E-02
139	GO:0019344: cysteine biosynthetic process	1.88E-02
140	GO:0009768: photosynthesis, light harvesting in photosystem I	2.01E-02
141	GO:0006306: DNA methylation	2.15E-02
142	GO:0016226: iron-sulfur cluster assembly	2.29E-02
143	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.44E-02
144	GO:0019722: calcium-mediated signaling	2.59E-02
145	GO:0006396: RNA processing	2.71E-02
146	GO:0008033: tRNA processing	2.90E-02
147	GO:0006508: proteolysis	2.94E-02
148	GO:0006662: glycerol ether metabolic process	3.06E-02
149	GO:0010197: polar nucleus fusion	3.06E-02
150	GO:0006342: chromatin silencing	3.06E-02
151	GO:0007018: microtubule-based movement	3.22E-02
152	GO:0006814: sodium ion transport	3.22E-02
153	GO:0019252: starch biosynthetic process	3.39E-02
154	GO:0000302: response to reactive oxygen species	3.55E-02
155	GO:0032502: developmental process	3.72E-02
156	GO:0042744: hydrogen peroxide catabolic process	3.75E-02
157	GO:0030163: protein catabolic process	3.90E-02
158	GO:0009828: plant-type cell wall loosening	4.07E-02
159	GO:0006413: translational initiation	4.23E-02
160	GO:0071805: potassium ion transmembrane transport	4.25E-02
161	GO:0007267: cell-cell signaling	4.25E-02
162	GO:0051607: defense response to virus	4.43E-02
163	GO:0006810: transport	4.59E-02
164	GO:0009451: RNA modification	4.63E-02
165	GO:0009816: defense response to bacterium, incompatible interaction	4.80E-02
166	GO:0042128: nitrate assimilation	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
2	GO:0008887: glycerate kinase activity	0.00E+00
3	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
4	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
5	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
6	GO:0004401: histidinol-phosphatase activity	0.00E+00
7	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
8	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
9	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
10	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
11	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
12	GO:0005048: signal sequence binding	0.00E+00
13	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
14	GO:0019843: rRNA binding	8.85E-26
15	GO:0003735: structural constituent of ribosome	4.22E-20
16	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.28E-13
17	GO:0005528: FK506 binding	2.61E-09
18	GO:0016149: translation release factor activity, codon specific	4.34E-05
19	GO:0016851: magnesium chelatase activity	4.34E-05
20	GO:0016987: sigma factor activity	7.72E-05
21	GO:0001053: plastid sigma factor activity	7.72E-05
22	GO:0051920: peroxiredoxin activity	2.36E-04
23	GO:0004831: tyrosine-tRNA ligase activity	3.52E-04
24	GO:0004655: porphobilinogen synthase activity	3.52E-04
25	GO:0010347: L-galactose-1-phosphate phosphatase activity	3.52E-04
26	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	3.52E-04
27	GO:0004425: indole-3-glycerol-phosphate synthase activity	3.52E-04
28	GO:0003723: RNA binding	3.73E-04
29	GO:0016209: antioxidant activity	3.84E-04
30	GO:0003747: translation release factor activity	5.65E-04
31	GO:0008805: carbon-monoxide oxygenase activity	7.67E-04
32	GO:0008934: inositol monophosphate 1-phosphatase activity	7.67E-04
33	GO:0016630: protochlorophyllide reductase activity	7.67E-04
34	GO:0052833: inositol monophosphate 4-phosphatase activity	7.67E-04
35	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	7.67E-04
36	GO:0004617: phosphoglycerate dehydrogenase activity	7.67E-04
37	GO:0052832: inositol monophosphate 3-phosphatase activity	7.67E-04
38	GO:0004817: cysteine-tRNA ligase activity	7.67E-04
39	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	7.67E-04
40	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	7.67E-04
41	GO:0008047: enzyme activator activity	7.77E-04
42	GO:0031072: heat shock protein binding	1.16E-03
43	GO:0017150: tRNA dihydrouridine synthase activity	1.24E-03
44	GO:0002161: aminoacyl-tRNA editing activity	1.24E-03
45	GO:0004148: dihydrolipoyl dehydrogenase activity	1.24E-03
46	GO:0030267: glyoxylate reductase (NADP) activity	1.24E-03
47	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.24E-03
48	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	1.24E-03
49	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	1.24E-03
50	GO:0008266: poly(U) RNA binding	1.30E-03
51	GO:0004222: metalloendopeptidase activity	1.32E-03
52	GO:0035197: siRNA binding	1.79E-03
53	GO:0004550: nucleoside diphosphate kinase activity	1.79E-03
54	GO:0043023: ribosomal large subunit binding	1.79E-03
55	GO:0008508: bile acid:sodium symporter activity	1.79E-03
56	GO:0043495: protein anchor	2.40E-03
57	GO:0004659: prenyltransferase activity	2.40E-03
58	GO:0005319: lipid transporter activity	2.40E-03
59	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	2.40E-03
60	GO:0004812: aminoacyl-tRNA ligase activity	3.06E-03
61	GO:0003959: NADPH dehydrogenase activity	3.07E-03
62	GO:0016773: phosphotransferase activity, alcohol group as acceptor	3.07E-03
63	GO:0004040: amidase activity	3.07E-03
64	GO:0004130: cytochrome-c peroxidase activity	3.79E-03
65	GO:0016208: AMP binding	3.79E-03
66	GO:0016688: L-ascorbate peroxidase activity	3.79E-03
67	GO:0004791: thioredoxin-disulfide reductase activity	3.83E-03
68	GO:0016788: hydrolase activity, acting on ester bonds	4.20E-03
69	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.57E-03
70	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	4.57E-03
71	GO:0004747: ribokinase activity	4.57E-03
72	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	5.01E-03
73	GO:0019899: enzyme binding	5.40E-03
74	GO:0016831: carboxy-lyase activity	5.40E-03
75	GO:0008235: metalloexopeptidase activity	5.40E-03
76	GO:0008312: 7S RNA binding	6.27E-03
77	GO:0004033: aldo-keto reductase (NADP) activity	6.27E-03
78	GO:0008865: fructokinase activity	6.27E-03
79	GO:0003729: mRNA binding	6.42E-03
80	GO:0016168: chlorophyll binding	6.74E-03
81	GO:0005509: calcium ion binding	7.09E-03
82	GO:0008236: serine-type peptidase activity	7.91E-03
83	GO:0005381: iron ion transmembrane transporter activity	9.17E-03
84	GO:0005384: manganese ion transmembrane transporter activity	9.17E-03
85	GO:0047617: acyl-CoA hydrolase activity	9.17E-03
86	GO:0003746: translation elongation factor activity	1.06E-02
87	GO:0004177: aminopeptidase activity	1.13E-02
88	GO:0000049: tRNA binding	1.25E-02
89	GO:0004521: endoribonuclease activity	1.25E-02
90	GO:0042802: identical protein binding	1.36E-02
91	GO:0008081: phosphoric diester hydrolase activity	1.37E-02
92	GO:0015095: magnesium ion transmembrane transporter activity	1.37E-02
93	GO:0051537: 2 iron, 2 sulfur cluster binding	1.48E-02
94	GO:0051287: NAD binding	1.66E-02
95	GO:0031409: pigment binding	1.74E-02
96	GO:0004601: peroxidase activity	1.75E-02
97	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.85E-02
98	GO:0051536: iron-sulfur cluster binding	1.88E-02
99	GO:0015079: potassium ion transmembrane transporter activity	2.01E-02
100	GO:0003777: microtubule motor activity	2.05E-02
101	GO:0046872: metal ion binding	2.42E-02
102	GO:0030570: pectate lyase activity	2.44E-02
103	GO:0022891: substrate-specific transmembrane transporter activity	2.44E-02
104	GO:0003727: single-stranded RNA binding	2.59E-02
105	GO:0052689: carboxylic ester hydrolase activity	2.61E-02
106	GO:0051082: unfolded protein binding	2.63E-02
107	GO:0047134: protein-disulfide reductase activity	2.74E-02
108	GO:0008080: N-acetyltransferase activity	3.06E-02
109	GO:0003924: GTPase activity	3.73E-02
110	GO:0004519: endonuclease activity	4.14E-02
111	GO:0008237: metallopeptidase activity	4.25E-02
112	GO:0016597: amino acid binding	4.43E-02
113	GO:0008017: microtubule binding	4.74E-02

Rank	GO Term	Adjusted P value
1	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
2	GO:0044391: ribosomal subunit	0.00E+00
3	GO:0009507: chloroplast	8.69E-94
4	GO:0009570: chloroplast stroma	1.32E-65
5	GO:0009941: chloroplast envelope	1.85E-46
6	GO:0009535: chloroplast thylakoid membrane	1.59E-36
7	GO:0009579: thylakoid	1.79E-28
8	GO:0009543: chloroplast thylakoid lumen	4.58E-24
9	GO:0031977: thylakoid lumen	6.79E-21
10	GO:0005840: ribosome	5.39E-20
11	GO:0009534: chloroplast thylakoid	4.20E-14
12	GO:0009654: photosystem II oxygen evolving complex	3.71E-09
13	GO:0019898: extrinsic component of membrane	4.67E-08
14	GO:0042651: thylakoid membrane	8.21E-06
15	GO:0010007: magnesium chelatase complex	1.97E-05
16	GO:0000311: plastid large ribosomal subunit	6.40E-05
17	GO:0030095: chloroplast photosystem II	9.45E-05
18	GO:0031969: chloroplast membrane	2.97E-04
19	GO:0009533: chloroplast stromal thylakoid	3.06E-04
20	GO:0043190: ATP-binding cassette (ABC) transporter complex	3.52E-04
21	GO:0009515: granal stacked thylakoid	3.52E-04
22	GO:0009547: plastid ribosome	3.52E-04
23	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.65E-04
24	GO:0080085: signal recognition particle, chloroplast targeting	7.67E-04
25	GO:0000312: plastid small ribosomal subunit	1.30E-03
26	GO:0015934: large ribosomal subunit	1.40E-03
27	GO:0005719: nuclear euchromatin	1.79E-03
28	GO:0015935: small ribosomal subunit	2.18E-03
29	GO:0046658: anchored component of plasma membrane	3.21E-03
30	GO:0016020: membrane	3.25E-03
31	GO:0009523: photosystem II	4.11E-03
32	GO:0009536: plastid	4.23E-03
33	GO:0009706: chloroplast inner membrane	5.00E-03
34	GO:0005874: microtubule	5.37E-03
35	GO:0022625: cytosolic large ribosomal subunit	6.11E-03
36	GO:0030529: intracellular ribonucleoprotein complex	6.37E-03
37	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	7.19E-03
38	GO:0009707: chloroplast outer membrane	8.33E-03
39	GO:0015030: Cajal body	9.17E-03
40	GO:0032040: small-subunit processome	1.25E-02
41	GO:0030076: light-harvesting complex	1.61E-02
42	GO:0005875: microtubule associated complex	1.74E-02
43	GO:0048046: apoplast	1.79E-02
44	GO:0009532: plastid stroma	2.15E-02
45	GO:0022626: cytosolic ribosome	2.27E-02
46	GO:0005871: kinesin complex	2.74E-02
47	GO:0010287: plastoglobule	3.12E-02
48	GO:0009522: photosystem I	3.22E-02
49	GO:0005623: cell	3.38E-02
50	GO:0009295: nucleoid	4.25E-02
51	GO:0005778: peroxisomal membrane	4.25E-02
52	GO:0010319: stromule	4.25E-02