co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G44446

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015717: triose phosphate transport	0.00E+00
2	GO:0009661: chromoplast organization	0.00E+00
3	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
4	GO:0070584: mitochondrion morphogenesis	0.00E+00
5	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
6	GO:1902171: regulation of tocopherol cyclase activity	0.00E+00
7	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
8	GO:0046677: response to antibiotic	0.00E+00
9	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
10	GO:0015979: photosynthesis	1.47E-17
11	GO:0009768: photosynthesis, light harvesting in photosystem I	7.91E-13
12	GO:0010114: response to red light	3.58E-11
13	GO:0018298: protein-chromophore linkage	1.32E-08
14	GO:0009637: response to blue light	2.88E-08
15	GO:0010218: response to far red light	7.30E-07
16	GO:0009640: photomorphogenesis	2.10E-06
17	GO:0015995: chlorophyll biosynthetic process	1.37E-05
18	GO:0010196: nonphotochemical quenching	9.14E-05
19	GO:0009645: response to low light intensity stimulus	9.14E-05
20	GO:0050821: protein stabilization	1.18E-04
21	GO:0050992: dimethylallyl diphosphate biosynthetic process	3.65E-04
22	GO:1904143: positive regulation of carotenoid biosynthetic process	3.65E-04
23	GO:0015790: UDP-xylose transport	3.65E-04
24	GO:0009915: phloem sucrose loading	3.65E-04
25	GO:0018107: peptidyl-threonine phosphorylation	3.89E-04
26	GO:0009644: response to high light intensity	5.84E-04
27	GO:0035436: triose phosphate transmembrane transport	5.97E-04
28	GO:0048575: short-day photoperiodism, flowering	5.97E-04
29	GO:1902448: positive regulation of shade avoidance	5.97E-04
30	GO:0009416: response to light stimulus	9.77E-04
31	GO:0042938: dipeptide transport	1.13E-03
32	GO:0009755: hormone-mediated signaling pathway	1.13E-03
33	GO:0009765: photosynthesis, light harvesting	1.13E-03
34	GO:2000306: positive regulation of photomorphogenesis	1.13E-03
35	GO:0030007: cellular potassium ion homeostasis	1.13E-03
36	GO:0015713: phosphoglycerate transport	1.13E-03
37	GO:0015846: polyamine transport	1.13E-03
38	GO:0009741: response to brassinosteroid	1.17E-03
39	GO:0016123: xanthophyll biosynthetic process	1.43E-03
40	GO:0010438: cellular response to sulfur starvation	1.43E-03
41	GO:0016120: carotene biosynthetic process	1.43E-03
42	GO:0055114: oxidation-reduction process	1.72E-03
43	GO:0009643: photosynthetic acclimation	1.76E-03
44	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.76E-03
45	GO:0045962: positive regulation of development, heterochronic	1.76E-03
46	GO:0006655: phosphatidylglycerol biosynthetic process	1.76E-03
47	GO:0010189: vitamin E biosynthetic process	2.11E-03
48	GO:0071470: cellular response to osmotic stress	2.11E-03
49	GO:0031930: mitochondria-nucleus signaling pathway	2.11E-03
50	GO:0051510: regulation of unidimensional cell growth	2.48E-03
51	GO:1900056: negative regulation of leaf senescence	2.48E-03
52	GO:0080186: developmental vegetative growth	2.48E-03
53	GO:0009769: photosynthesis, light harvesting in photosystem II	2.48E-03
54	GO:2000070: regulation of response to water deprivation	2.88E-03
55	GO:0009819: drought recovery	2.88E-03
56	GO:0009642: response to light intensity	2.88E-03
57	GO:0010439: regulation of glucosinolate biosynthetic process	2.88E-03
58	GO:0009910: negative regulation of flower development	3.10E-03
59	GO:0010119: regulation of stomatal movement	3.10E-03
60	GO:0010100: negative regulation of photomorphogenesis	3.29E-03
61	GO:0007186: G-protein coupled receptor signaling pathway	3.29E-03
62	GO:0009657: plastid organization	3.29E-03
63	GO:0034599: cellular response to oxidative stress	3.55E-03
64	GO:0048507: meristem development	3.72E-03
65	GO:0010206: photosystem II repair	3.72E-03
66	GO:0034765: regulation of ion transmembrane transport	3.72E-03
67	GO:0009735: response to cytokinin	3.77E-03
68	GO:0009826: unidimensional cell growth	3.92E-03
69	GO:0009658: chloroplast organization	4.12E-03
70	GO:0008356: asymmetric cell division	4.17E-03
71	GO:0010380: regulation of chlorophyll biosynthetic process	4.17E-03
72	GO:0009688: abscisic acid biosynthetic process	4.64E-03
73	GO:0045036: protein targeting to chloroplast	4.64E-03
74	GO:0006949: syncytium formation	4.64E-03
75	GO:0019538: protein metabolic process	4.64E-03
76	GO:0009723: response to ethylene	4.95E-03
77	GO:0018119: peptidyl-cysteine S-nitrosylation	5.12E-03
78	GO:0030148: sphingolipid biosynthetic process	5.12E-03
79	GO:0046856: phosphatidylinositol dephosphorylation	5.12E-03
80	GO:0009682: induced systemic resistance	5.12E-03
81	GO:0015770: sucrose transport	5.12E-03
82	GO:0043085: positive regulation of catalytic activity	5.12E-03
83	GO:0080167: response to karrikin	5.41E-03
84	GO:0010105: negative regulation of ethylene-activated signaling pathway	5.62E-03
85	GO:0016024: CDP-diacylglycerol biosynthetic process	5.62E-03
86	GO:0015706: nitrate transport	5.62E-03
87	GO:2000028: regulation of photoperiodism, flowering	6.14E-03
88	GO:0009767: photosynthetic electron transport chain	6.14E-03
89	GO:0006351: transcription, DNA-templated	6.35E-03
90	GO:0009887: animal organ morphogenesis	6.67E-03
91	GO:0010207: photosystem II assembly	6.67E-03
92	GO:0045454: cell redox homeostasis	6.79E-03
93	GO:0006355: regulation of transcription, DNA-templated	6.92E-03
94	GO:0090351: seedling development	7.22E-03
95	GO:0005985: sucrose metabolic process	7.22E-03
96	GO:0009833: plant-type primary cell wall biogenesis	7.79E-03
97	GO:0034976: response to endoplasmic reticulum stress	7.79E-03
98	GO:0009624: response to nematode	8.37E-03
99	GO:0006289: nucleotide-excision repair	8.38E-03
100	GO:0018105: peptidyl-serine phosphorylation	8.62E-03
101	GO:0006629: lipid metabolic process	8.87E-03
102	GO:0009742: brassinosteroid mediated signaling pathway	8.87E-03
103	GO:0006874: cellular calcium ion homeostasis	8.97E-03
104	GO:0003333: amino acid transmembrane transport	9.59E-03
105	GO:0051260: protein homooligomerization	9.59E-03
106	GO:0048511: rhythmic process	9.59E-03
107	GO:0009269: response to desiccation	9.59E-03
108	GO:0010017: red or far-red light signaling pathway	1.02E-02
109	GO:0009625: response to insect	1.09E-02
110	GO:0045492: xylan biosynthetic process	1.15E-02
111	GO:0070417: cellular response to cold	1.22E-02
112	GO:0006662: glycerol ether metabolic process	1.36E-02
113	GO:0010182: sugar mediated signaling pathway	1.36E-02
114	GO:0010305: leaf vascular tissue pattern formation	1.36E-02
115	GO:0007018: microtubule-based movement	1.43E-02
116	GO:0006814: sodium ion transport	1.43E-02
117	GO:0007623: circadian rhythm	1.45E-02
118	GO:0008654: phospholipid biosynthetic process	1.50E-02
119	GO:0009791: post-embryonic development	1.50E-02
120	GO:0010228: vegetative to reproductive phase transition of meristem	1.52E-02
121	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.58E-02
122	GO:0010193: response to ozone	1.58E-02
123	GO:0009739: response to gibberellin	1.62E-02
124	GO:0009828: plant-type cell wall loosening	1.81E-02
125	GO:0071805: potassium ion transmembrane transport	1.89E-02
126	GO:0010029: regulation of seed germination	2.13E-02
127	GO:0048573: photoperiodism, flowering	2.30E-02
128	GO:0016311: dephosphorylation	2.39E-02
129	GO:0030244: cellulose biosynthetic process	2.47E-02
130	GO:0006811: ion transport	2.65E-02
131	GO:0007568: aging	2.74E-02
132	GO:0006865: amino acid transport	2.84E-02
133	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.89E-02
134	GO:0009867: jasmonic acid mediated signaling pathway	2.93E-02
135	GO:0044550: secondary metabolite biosynthetic process	3.03E-02
136	GO:0006631: fatty acid metabolic process	3.31E-02
137	GO:0051707: response to other organism	3.51E-02
138	GO:0008643: carbohydrate transport	3.71E-02
139	GO:0009965: leaf morphogenesis	3.81E-02
140	GO:0032259: methylation	3.94E-02
141	GO:0006812: cation transport	4.12E-02
142	GO:0009664: plant-type cell wall organization	4.12E-02
143	GO:0048364: root development	4.28E-02
144	GO:0009585: red, far-red light phototransduction	4.34E-02
145	GO:0010224: response to UV-B	4.44E-02
146	GO:0006857: oligopeptide transport	4.55E-02
147	GO:0009909: regulation of flower development	4.66E-02
148	GO:0006417: regulation of translation	4.66E-02
149	GO:0043086: negative regulation of catalytic activity	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	0.00E+00
2	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
3	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
4	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
5	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
6	GO:0015269: calcium-activated potassium channel activity	0.00E+00
7	GO:0045550: geranylgeranyl reductase activity	0.00E+00
8	GO:0031409: pigment binding	4.59E-11
9	GO:0016168: chlorophyll binding	6.58E-09
10	GO:0004462: lactoylglutathione lyase activity	4.89E-05
11	GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor	1.60E-04
12	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	1.60E-04
13	GO:0052631: sphingolipid delta-8 desaturase activity	1.60E-04
14	GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	1.60E-04
15	GO:0015297: antiporter activity	3.45E-04
16	GO:0080045: quercetin 3'-O-glucosyltransferase activity	3.65E-04
17	GO:0016868: intramolecular transferase activity, phosphotransferases	3.65E-04
18	GO:0005464: UDP-xylose transmembrane transporter activity	3.65E-04
19	GO:0016630: protochlorophyllide reductase activity	3.65E-04
20	GO:0019172: glyoxalase III activity	3.65E-04
21	GO:0016805: dipeptidase activity	5.97E-04
22	GO:0071917: triose-phosphate transmembrane transporter activity	5.97E-04
23	GO:0004180: carboxypeptidase activity	5.97E-04
24	GO:0005216: ion channel activity	6.66E-04
25	GO:0015203: polyamine transmembrane transporter activity	8.53E-04
26	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	8.53E-04
27	GO:0016851: magnesium chelatase activity	8.53E-04
28	GO:0015120: phosphoglycerate transmembrane transporter activity	1.13E-03
29	GO:0042936: dipeptide transporter activity	1.13E-03
30	GO:0070628: proteasome binding	1.13E-03
31	GO:0004930: G-protein coupled receptor activity	1.13E-03
32	GO:0046872: metal ion binding	1.41E-03
33	GO:0051538: 3 iron, 4 sulfur cluster binding	1.43E-03
34	GO:0080046: quercetin 4'-O-glucosyltransferase activity	1.76E-03
35	GO:0015271: outward rectifier potassium channel activity	1.76E-03
36	GO:0004605: phosphatidate cytidylyltransferase activity	1.76E-03
37	GO:0031593: polyubiquitin binding	1.76E-03
38	GO:0004602: glutathione peroxidase activity	2.11E-03
39	GO:0008506: sucrose:proton symporter activity	2.48E-03
40	GO:0005267: potassium channel activity	3.29E-03
41	GO:0071949: FAD binding	3.72E-03
42	GO:0015174: basic amino acid transmembrane transporter activity	4.17E-03
43	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	4.64E-03
44	GO:0008047: enzyme activator activity	4.64E-03
45	GO:0015293: symporter activity	4.90E-03
46	GO:0047372: acylglycerol lipase activity	5.12E-03
47	GO:0008515: sucrose transmembrane transporter activity	5.12E-03
48	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	5.62E-03
49	GO:0005315: inorganic phosphate transmembrane transporter activity	6.14E-03
50	GO:0004022: alcohol dehydrogenase (NAD) activity	6.14E-03
51	GO:0004672: protein kinase activity	6.57E-03
52	GO:0004970: ionotropic glutamate receptor activity	7.22E-03
53	GO:0004190: aspartic-type endopeptidase activity	7.22E-03
54	GO:0005217: intracellular ligand-gated ion channel activity	7.22E-03
55	GO:0003712: transcription cofactor activity	7.22E-03
56	GO:0016874: ligase activity	7.88E-03
57	GO:0043130: ubiquitin binding	8.38E-03
58	GO:0015035: protein disulfide oxidoreductase activity	8.62E-03
59	GO:0004176: ATP-dependent peptidase activity	9.59E-03
60	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.08E-02
61	GO:0016760: cellulose synthase (UDP-forming) activity	1.09E-02
62	GO:0003727: single-stranded RNA binding	1.15E-02
63	GO:0008514: organic anion transmembrane transporter activity	1.15E-02
64	GO:0003756: protein disulfide isomerase activity	1.15E-02
65	GO:0047134: protein-disulfide reductase activity	1.22E-02
66	GO:0015144: carbohydrate transmembrane transporter activity	1.26E-02
67	GO:0005351: sugar:proton symporter activity	1.42E-02
68	GO:0004791: thioredoxin-disulfide reductase activity	1.43E-02
69	GO:0048038: quinone binding	1.58E-02
70	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.73E-02
71	GO:0016759: cellulose synthase activity	1.81E-02
72	GO:0003684: damaged DNA binding	1.81E-02
73	GO:0005515: protein binding	1.90E-02
74	GO:0008168: methyltransferase activity	2.17E-02
75	GO:0003700: transcription factor activity, sequence-specific DNA binding	2.32E-02
76	GO:0008233: peptidase activity	2.74E-02
77	GO:0004497: monooxygenase activity	2.79E-02
78	GO:0003993: acid phosphatase activity	3.02E-02
79	GO:0004871: signal transducer activity	3.50E-02
80	GO:0003677: DNA binding	3.64E-02
81	GO:0051537: 2 iron, 2 sulfur cluster binding	3.71E-02
82	GO:0043621: protein self-association	3.71E-02
83	GO:0016787: hydrolase activity	3.88E-02
84	GO:0005506: iron ion binding	4.33E-02
85	GO:0044212: transcription regulatory region DNA binding	4.42E-02
86	GO:0016298: lipase activity	4.44E-02
87	GO:0003777: microtubule motor activity	4.66E-02
88	GO:0015171: amino acid transmembrane transporter activity	4.66E-02
89	GO:0005215: transporter activity	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0009783: photosystem II antenna complex	0.00E+00
2	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
3	GO:0009534: chloroplast thylakoid	2.32E-21
4	GO:0009535: chloroplast thylakoid membrane	1.30E-19
5	GO:0009941: chloroplast envelope	3.20E-16
6	GO:0010287: plastoglobule	1.94E-14
7	GO:0009579: thylakoid	2.53E-14
8	GO:0009507: chloroplast	4.51E-12
9	GO:0009522: photosystem I	1.22E-11
10	GO:0009538: photosystem I reaction center	4.65E-11
11	GO:0030076: light-harvesting complex	3.31E-07
12	GO:0016020: membrane	2.61E-06
13	GO:0009517: PSII associated light-harvesting complex II	2.01E-05
14	GO:0016021: integral component of membrane	3.10E-05
15	GO:0009523: photosystem II	1.03E-04
16	GO:0031969: chloroplast membrane	1.66E-04
17	GO:0009570: chloroplast stroma	1.94E-04
18	GO:0030095: chloroplast photosystem II	4.38E-04
19	GO:0016605: PML body	5.97E-04
20	GO:0010007: magnesium chelatase complex	5.97E-04
21	GO:0030660: Golgi-associated vesicle membrane	1.13E-03
22	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.13E-03
23	GO:0009543: chloroplast thylakoid lumen	1.57E-03
24	GO:0009533: chloroplast stromal thylakoid	2.48E-03
25	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	2.88E-03
26	GO:0031977: thylakoid lumen	4.03E-03
27	GO:0016604: nuclear body	4.17E-03
28	GO:0005765: lysosomal membrane	5.12E-03
29	GO:0009706: chloroplast inner membrane	8.37E-03
30	GO:0009654: photosystem II oxygen evolving complex	8.97E-03
31	GO:0042651: thylakoid membrane	8.97E-03
32	GO:0005623: cell	1.08E-02
33	GO:0005871: kinesin complex	1.22E-02
34	GO:0019898: extrinsic component of membrane	1.50E-02
35	GO:0009707: chloroplast outer membrane	2.47E-02
36	GO:0016607: nuclear speck	4.99E-02
37	GO:0010008: endosome membrane	4.99E-02