co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G43860

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
2	GO:0043171: peptide catabolic process	0.00E+00
3	GO:0060213: positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	0.00E+00
4	GO:0010378: temperature compensation of the circadian clock	0.00E+00
5	GO:0000390: spliceosomal complex disassembly	0.00E+00
6	GO:0009768: photosynthesis, light harvesting in photosystem I	9.28E-09
7	GO:0018298: protein-chromophore linkage	1.32E-08
8	GO:0009769: photosynthesis, light harvesting in photosystem II	1.08E-06
9	GO:0009645: response to low light intensity stimulus	1.08E-06
10	GO:0009409: response to cold	1.50E-05
11	GO:0080167: response to karrikin	1.81E-05
12	GO:0000380: alternative mRNA splicing, via spliceosome	3.28E-05
13	GO:0009644: response to high light intensity	5.26E-05
14	GO:0000291: nuclear-transcribed mRNA catabolic process, exonucleolytic	1.60E-04
15	GO:1990641: response to iron ion starvation	1.60E-04
16	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	1.60E-04
17	GO:1902265: abscisic acid homeostasis	1.60E-04
18	GO:0015812: gamma-aminobutyric acid transport	1.60E-04
19	GO:0032958: inositol phosphate biosynthetic process	1.60E-04
20	GO:0015979: photosynthesis	2.16E-04
21	GO:0010218: response to far red light	3.18E-04
22	GO:0001736: establishment of planar polarity	3.65E-04
23	GO:0006611: protein export from nucleus	3.65E-04
24	GO:0032509: endosome transport via multivesicular body sorting pathway	3.65E-04
25	GO:0006101: citrate metabolic process	3.65E-04
26	GO:0045948: positive regulation of translational initiation	3.65E-04
27	GO:0048209: regulation of vesicle targeting, to, from or within Golgi	3.65E-04
28	GO:0007623: circadian rhythm	3.72E-04
29	GO:0009637: response to blue light	3.82E-04
30	GO:0042542: response to hydrogen peroxide	5.03E-04
31	GO:0000055: ribosomal large subunit export from nucleus	5.97E-04
32	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	5.97E-04
33	GO:0006598: polyamine catabolic process	5.97E-04
34	GO:0032012: regulation of ARF protein signal transduction	5.97E-04
35	GO:0006954: inflammatory response	5.97E-04
36	GO:0006278: RNA-dependent DNA biosynthetic process	5.97E-04
37	GO:0016255: attachment of GPI anchor to protein	5.97E-04
38	GO:0042780: tRNA 3'-end processing	5.97E-04
39	GO:0006882: cellular zinc ion homeostasis	8.53E-04
40	GO:0006020: inositol metabolic process	8.53E-04
41	GO:0010601: positive regulation of auxin biosynthetic process	8.53E-04
42	GO:0015749: monosaccharide transport	8.53E-04
43	GO:0006646: phosphatidylethanolamine biosynthetic process	1.13E-03
44	GO:0009687: abscisic acid metabolic process	1.13E-03
45	GO:0015743: malate transport	1.13E-03
46	GO:0009765: photosynthesis, light harvesting	1.13E-03
47	GO:0042273: ribosomal large subunit biogenesis	1.13E-03
48	GO:0030104: water homeostasis	1.13E-03
49	GO:0006878: cellular copper ion homeostasis	1.13E-03
50	GO:0042752: regulation of circadian rhythm	1.26E-03
51	GO:0007029: endoplasmic reticulum organization	1.43E-03
52	GO:0048578: positive regulation of long-day photoperiodism, flowering	1.43E-03
53	GO:0048827: phyllome development	1.76E-03
54	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.76E-03
55	GO:0000741: karyogamy	1.76E-03
56	GO:0009635: response to herbicide	1.76E-03
57	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	2.11E-03
58	GO:0071333: cellular response to glucose stimulus	2.11E-03
59	GO:0000911: cytokinesis by cell plate formation	2.11E-03
60	GO:0009942: longitudinal axis specification	2.11E-03
61	GO:0048437: floral organ development	2.48E-03
62	GO:0006102: isocitrate metabolic process	2.88E-03
63	GO:0007155: cell adhesion	2.88E-03
64	GO:0009061: anaerobic respiration	2.88E-03
65	GO:0009819: drought recovery	2.88E-03
66	GO:0048766: root hair initiation	2.88E-03
67	GO:0009415: response to water	2.88E-03
68	GO:0032508: DNA duplex unwinding	2.88E-03
69	GO:0006811: ion transport	2.96E-03
70	GO:0010043: response to zinc ion	3.10E-03
71	GO:0010119: regulation of stomatal movement	3.10E-03
72	GO:0009414: response to water deprivation	3.22E-03
73	GO:0009880: embryonic pattern specification	3.29E-03
74	GO:0001510: RNA methylation	3.29E-03
75	GO:0006367: transcription initiation from RNA polymerase II promoter	3.29E-03
76	GO:0045087: innate immune response	3.40E-03
77	GO:0007165: signal transduction	3.68E-03
78	GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	3.72E-03
79	GO:0090333: regulation of stomatal closure	3.72E-03
80	GO:0046916: cellular transition metal ion homeostasis	3.72E-03
81	GO:0010114: response to red light	4.37E-03
82	GO:0009926: auxin polar transport	4.37E-03
83	GO:0006970: response to osmotic stress	4.52E-03
84	GO:0010629: negative regulation of gene expression	4.64E-03
85	GO:0009970: cellular response to sulfate starvation	4.64E-03
86	GO:0006995: cellular response to nitrogen starvation	4.64E-03
87	GO:0055062: phosphate ion homeostasis	4.64E-03
88	GO:0035556: intracellular signal transduction	4.69E-03
89	GO:0008643: carbohydrate transport	4.72E-03
90	GO:0048765: root hair cell differentiation	5.12E-03
91	GO:0016925: protein sumoylation	5.62E-03
92	GO:2000012: regulation of auxin polar transport	6.14E-03
93	GO:0010102: lateral root morphogenesis	6.14E-03
94	GO:0010540: basipetal auxin transport	6.67E-03
95	GO:0019853: L-ascorbic acid biosynthetic process	7.22E-03
96	GO:0010030: positive regulation of seed germination	7.22E-03
97	GO:0006406: mRNA export from nucleus	8.38E-03
98	GO:0006396: RNA processing	8.62E-03
99	GO:0009651: response to salt stress	9.36E-03
100	GO:0009269: response to desiccation	9.59E-03
101	GO:0003333: amino acid transmembrane transport	9.59E-03
102	GO:0006012: galactose metabolic process	1.09E-02
103	GO:0071215: cellular response to abscisic acid stimulus	1.09E-02
104	GO:0009561: megagametogenesis	1.15E-02
105	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.22E-02
106	GO:0009737: response to abscisic acid	1.25E-02
107	GO:0010087: phloem or xylem histogenesis	1.29E-02
108	GO:0042391: regulation of membrane potential	1.29E-02
109	GO:0010501: RNA secondary structure unwinding	1.29E-02
110	GO:0010197: polar nucleus fusion	1.36E-02
111	GO:0046323: glucose import	1.36E-02
112	GO:0009958: positive gravitropism	1.36E-02
113	GO:0048544: recognition of pollen	1.43E-02
114	GO:0008654: phospholipid biosynthetic process	1.50E-02
115	GO:0009556: microsporogenesis	1.50E-02
116	GO:0048825: cotyledon development	1.50E-02
117	GO:0006891: intra-Golgi vesicle-mediated transport	1.58E-02
118	GO:0010468: regulation of gene expression	1.73E-02
119	GO:0006914: autophagy	1.81E-02
120	GO:0009416: response to light stimulus	1.84E-02
121	GO:0010286: heat acclimation	1.89E-02
122	GO:0009911: positive regulation of flower development	2.05E-02
123	GO:0001666: response to hypoxia	2.05E-02
124	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.13E-02
125	GO:0010029: regulation of seed germination	2.13E-02
126	GO:0048573: photoperiodism, flowering	2.30E-02
127	GO:0006950: response to stress	2.30E-02
128	GO:0016049: cell growth	2.39E-02
129	GO:0009817: defense response to fungus, incompatible interaction	2.47E-02
130	GO:0048481: plant ovule development	2.47E-02
131	GO:0055085: transmembrane transport	2.48E-02
132	GO:0048767: root hair elongation	2.56E-02
133	GO:0010311: lateral root formation	2.56E-02
134	GO:0009834: plant-type secondary cell wall biogenesis	2.65E-02
135	GO:0006511: ubiquitin-dependent protein catabolic process	2.70E-02
136	GO:0009631: cold acclimation	2.74E-02
137	GO:0016192: vesicle-mediated transport	2.93E-02
138	GO:0016051: carbohydrate biosynthetic process	2.93E-02
139	GO:0006099: tricarboxylic acid cycle	3.02E-02
140	GO:0006839: mitochondrial transport	3.21E-02
141	GO:0030001: metal ion transport	3.21E-02
142	GO:0006897: endocytosis	3.31E-02
143	GO:0006886: intracellular protein transport	3.44E-02
144	GO:0051707: response to other organism	3.51E-02
145	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	4.02E-02
146	GO:0000165: MAPK cascade	4.02E-02
147	GO:0006812: cation transport	4.12E-02
148	GO:0009585: red, far-red light phototransduction	4.34E-02
149	GO:0006857: oligopeptide transport	4.55E-02

Rank	GO Term	Adjusted P value
1	GO:0016428: tRNA (cytosine-5-)-methyltransferase activity	0.00E+00
2	GO:1990446: U1 snRNP binding	0.00E+00
3	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
4	GO:0010292: GTP:GDP antiporter activity	0.00E+00
5	GO:0005358: high-affinity hydrogen:glucose symporter activity	0.00E+00
6	GO:0031409: pigment binding	5.06E-09
7	GO:0016168: chlorophyll binding	3.13E-07
8	GO:0004525: ribonuclease III activity	1.18E-04
9	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	1.60E-04
10	GO:0009679: hexose:proton symporter activity	1.60E-04
11	GO:0000829: inositol heptakisphosphate kinase activity	1.60E-04
12	GO:0010013: N-1-naphthylphthalamic acid binding	1.60E-04
13	GO:0046870: cadmium ion binding	1.60E-04
14	GO:0000828: inositol hexakisphosphate kinase activity	1.60E-04
15	GO:0016274: protein-arginine N-methyltransferase activity	1.60E-04
16	GO:0070006: metalloaminopeptidase activity	1.60E-04
17	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	1.60E-04
18	GO:0004177: aminopeptidase activity	2.97E-04
19	GO:0001047: core promoter binding	3.65E-04
20	GO:0032791: lead ion binding	3.65E-04
21	GO:0016891: endoribonuclease activity, producing 5'-phosphomonoesters	3.65E-04
22	GO:0004609: phosphatidylserine decarboxylase activity	3.65E-04
23	GO:0003994: aconitate hydratase activity	3.65E-04
24	GO:0004839: ubiquitin activating enzyme activity	3.65E-04
25	GO:0003923: GPI-anchor transamidase activity	3.65E-04
26	GO:0015180: L-alanine transmembrane transporter activity	3.65E-04
27	GO:0046592: polyamine oxidase activity	5.97E-04
28	GO:0019948: SUMO activating enzyme activity	5.97E-04
29	GO:0017150: tRNA dihydrouridine synthase activity	5.97E-04
30	GO:0042781: 3'-tRNA processing endoribonuclease activity	5.97E-04
31	GO:0004096: catalase activity	5.97E-04
32	GO:0043023: ribosomal large subunit binding	8.53E-04
33	GO:0015189: L-lysine transmembrane transporter activity	8.53E-04
34	GO:0048027: mRNA 5'-UTR binding	8.53E-04
35	GO:0015181: arginine transmembrane transporter activity	8.53E-04
36	GO:0004737: pyruvate decarboxylase activity	1.13E-03
37	GO:0005086: ARF guanyl-nucleotide exchange factor activity	1.13E-03
38	GO:0005313: L-glutamate transmembrane transporter activity	1.13E-03
39	GO:0005253: anion channel activity	1.13E-03
40	GO:0042277: peptide binding	1.13E-03
41	GO:0010294: abscisic acid glucosyltransferase activity	1.43E-03
42	GO:0015145: monosaccharide transmembrane transporter activity	1.43E-03
43	GO:0008641: small protein activating enzyme activity	1.43E-03
44	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	1.43E-03
45	GO:0030976: thiamine pyrophosphate binding	1.76E-03
46	GO:0004629: phospholipase C activity	1.76E-03
47	GO:0015562: efflux transmembrane transporter activity	1.76E-03
48	GO:0000293: ferric-chelate reductase activity	1.76E-03
49	GO:0031369: translation initiation factor binding	1.76E-03
50	GO:0003950: NAD+ ADP-ribosyltransferase activity	2.11E-03
51	GO:0004435: phosphatidylinositol phospholipase C activity	2.11E-03
52	GO:0016831: carboxy-lyase activity	2.48E-03
53	GO:0009881: photoreceptor activity	2.48E-03
54	GO:0015140: malate transmembrane transporter activity	2.48E-03
55	GO:0004033: aldo-keto reductase (NADP) activity	2.88E-03
56	GO:0003697: single-stranded DNA binding	3.40E-03
57	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	3.72E-03
58	GO:0015020: glucuronosyltransferase activity	4.64E-03
59	GO:0005515: protein binding	5.44E-03
60	GO:0008131: primary amine oxidase activity	6.67E-03
61	GO:0003729: mRNA binding	6.72E-03
62	GO:0046872: metal ion binding	6.81E-03
63	GO:0030552: cAMP binding	7.22E-03
64	GO:0030553: cGMP binding	7.22E-03
65	GO:0004722: protein serine/threonine phosphatase activity	7.64E-03
66	GO:0016301: kinase activity	7.99E-03
67	GO:0005216: ion channel activity	8.97E-03
68	GO:0008324: cation transmembrane transporter activity	8.97E-03
69	GO:0004707: MAP kinase activity	9.59E-03
70	GO:0003964: RNA-directed DNA polymerase activity	9.59E-03
71	GO:0003727: single-stranded RNA binding	1.15E-02
72	GO:0005249: voltage-gated potassium channel activity	1.29E-02
73	GO:0030551: cyclic nucleotide binding	1.29E-02
74	GO:0015297: antiporter activity	1.38E-02
75	GO:0005351: sugar:proton symporter activity	1.42E-02
76	GO:0003723: RNA binding	1.87E-02
77	GO:0008375: acetylglucosaminyltransferase activity	2.22E-02
78	GO:0004672: protein kinase activity	2.23E-02
79	GO:0004004: ATP-dependent RNA helicase activity	2.30E-02
80	GO:0050897: cobalt ion binding	2.74E-02
81	GO:0051539: 4 iron, 4 sulfur cluster binding	3.21E-02
82	GO:0005198: structural molecule activity	3.81E-02
83	GO:0005509: calcium ion binding	4.00E-02
84	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.34E-02
85	GO:0003690: double-stranded DNA binding	4.44E-02
86	GO:0015171: amino acid transmembrane transporter activity	4.66E-02
87	GO:0031625: ubiquitin protein ligase binding	4.66E-02
88	GO:0003824: catalytic activity	4.94E-02
89	GO:0005215: transporter activity	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0031981: nuclear lumen	0.00E+00
2	GO:0071008: U2-type post-mRNA release spliceosomal complex	0.00E+00
3	GO:0030076: light-harvesting complex	3.64E-09
4	GO:0009522: photosystem I	6.40E-08
5	GO:0009523: photosystem II	3.73E-06
6	GO:0010287: plastoglobule	1.69E-05
7	GO:0005777: peroxisome	4.42E-05
8	GO:0032777: Piccolo NuA4 histone acetyltransferase complex	3.65E-04
9	GO:0042765: GPI-anchor transamidase complex	5.97E-04
10	GO:0042651: thylakoid membrane	6.66E-04
11	GO:0009517: PSII associated light-harvesting complex II	1.13E-03
12	GO:0005776: autophagosome	1.13E-03
13	GO:0009579: thylakoid	1.33E-03
14	GO:0009534: chloroplast thylakoid	1.35E-03
15	GO:0005886: plasma membrane	1.42E-03
16	GO:0005829: cytosol	1.76E-03
17	GO:0005783: endoplasmic reticulum	2.04E-03
18	GO:0016363: nuclear matrix	2.11E-03
19	GO:0009986: cell surface	2.48E-03
20	GO:0030687: preribosome, large subunit precursor	2.48E-03
21	GO:0016021: integral component of membrane	3.04E-03
22	GO:0005680: anaphase-promoting complex	3.72E-03
23	GO:0031090: organelle membrane	3.72E-03
24	GO:0031966: mitochondrial membrane	5.48E-03
25	GO:0005665: DNA-directed RNA polymerase II, core complex	5.62E-03
26	GO:0010008: endosome membrane	7.18E-03
27	GO:0005795: Golgi stack	7.22E-03
28	GO:0031410: cytoplasmic vesicle	1.02E-02
29	GO:0005622: intracellular	1.03E-02
30	GO:0009506: plasmodesma	1.03E-02
31	GO:0016020: membrane	1.09E-02
32	GO:0009535: chloroplast thylakoid membrane	1.37E-02
33	GO:0009705: plant-type vacuole membrane	1.45E-02
34	GO:0031965: nuclear membrane	1.50E-02
35	GO:0009941: chloroplast envelope	1.79E-02
36	GO:0000932: P-body	2.05E-02
37	GO:0000151: ubiquitin ligase complex	2.47E-02
38	GO:0000786: nucleosome	2.84E-02
39	GO:0005819: spindle	3.12E-02