GO Enrichment Analysis of Co-expressed Genes with
AT1G43670
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 2 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 3 | GO:0006780: uroporphyrinogen III biosynthetic process | 0.00E+00 |
| 4 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 5 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 6 | GO:0015979: photosynthesis | 1.50E-05 |
| 7 | GO:0071482: cellular response to light stimulus | 3.77E-05 |
| 8 | GO:1900865: chloroplast RNA modification | 5.76E-05 |
| 9 | GO:1904966: positive regulation of vitamin E biosynthetic process | 6.58E-05 |
| 10 | GO:1904964: positive regulation of phytol biosynthetic process | 6.58E-05 |
| 11 | GO:0071588: hydrogen peroxide mediated signaling pathway | 6.58E-05 |
| 12 | GO:0034755: iron ion transmembrane transport | 1.59E-04 |
| 13 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 1.59E-04 |
| 14 | GO:0046741: transport of virus in host, tissue to tissue | 1.59E-04 |
| 15 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 1.59E-04 |
| 16 | GO:0080165: callose deposition in phloem sieve plate | 1.59E-04 |
| 17 | GO:0061077: chaperone-mediated protein folding | 2.23E-04 |
| 18 | GO:0051604: protein maturation | 2.69E-04 |
| 19 | GO:2001141: regulation of RNA biosynthetic process | 3.90E-04 |
| 20 | GO:0015994: chlorophyll metabolic process | 5.20E-04 |
| 21 | GO:0010027: thylakoid membrane organization | 6.52E-04 |
| 22 | GO:0080110: sporopollenin biosynthetic process | 6.60E-04 |
| 23 | GO:0031365: N-terminal protein amino acid modification | 6.60E-04 |
| 24 | GO:0015995: chlorophyll biosynthetic process | 7.62E-04 |
| 25 | GO:0016554: cytidine to uridine editing | 8.06E-04 |
| 26 | GO:0009658: chloroplast organization | 9.04E-04 |
| 27 | GO:0009082: branched-chain amino acid biosynthetic process | 9.59E-04 |
| 28 | GO:0006458: 'de novo' protein folding | 9.59E-04 |
| 29 | GO:0009099: valine biosynthetic process | 9.59E-04 |
| 30 | GO:0010019: chloroplast-nucleus signaling pathway | 9.59E-04 |
| 31 | GO:0042026: protein refolding | 9.59E-04 |
| 32 | GO:0034599: cellular response to oxidative stress | 1.10E-03 |
| 33 | GO:0006400: tRNA modification | 1.12E-03 |
| 34 | GO:0010196: nonphotochemical quenching | 1.12E-03 |
| 35 | GO:0009819: drought recovery | 1.29E-03 |
| 36 | GO:0009097: isoleucine biosynthetic process | 1.47E-03 |
| 37 | GO:0017004: cytochrome complex assembly | 1.47E-03 |
| 38 | GO:0090305: nucleic acid phosphodiester bond hydrolysis | 1.65E-03 |
| 39 | GO:0006779: porphyrin-containing compound biosynthetic process | 1.85E-03 |
| 40 | GO:0009098: leucine biosynthetic process | 1.85E-03 |
| 41 | GO:0006782: protoporphyrinogen IX biosynthetic process | 2.05E-03 |
| 42 | GO:0043085: positive regulation of catalytic activity | 2.26E-03 |
| 43 | GO:0006879: cellular iron ion homeostasis | 2.26E-03 |
| 44 | GO:0006352: DNA-templated transcription, initiation | 2.26E-03 |
| 45 | GO:0009773: photosynthetic electron transport in photosystem I | 2.26E-03 |
| 46 | GO:0005986: sucrose biosynthetic process | 2.70E-03 |
| 47 | GO:0005985: sucrose metabolic process | 3.16E-03 |
| 48 | GO:0016575: histone deacetylation | 3.90E-03 |
| 49 | GO:0006413: translational initiation | 4.05E-03 |
| 50 | GO:0016226: iron-sulfur cluster assembly | 4.43E-03 |
| 51 | GO:0010584: pollen exine formation | 4.98E-03 |
| 52 | GO:0016117: carotenoid biosynthetic process | 5.26E-03 |
| 53 | GO:0006662: glycerol ether metabolic process | 5.85E-03 |
| 54 | GO:0000302: response to reactive oxygen species | 6.76E-03 |
| 55 | GO:0080156: mitochondrial mRNA modification | 6.76E-03 |
| 56 | GO:0042254: ribosome biogenesis | 6.82E-03 |
| 57 | GO:0051607: defense response to virus | 8.40E-03 |
| 58 | GO:0009615: response to virus | 8.74E-03 |
| 59 | GO:0045454: cell redox homeostasis | 9.94E-03 |
| 60 | GO:0018298: protein-chromophore linkage | 1.05E-02 |
| 61 | GO:0006508: proteolysis | 1.09E-02 |
| 62 | GO:0009631: cold acclimation | 1.17E-02 |
| 63 | GO:0032259: methylation | 1.18E-02 |
| 64 | GO:0009637: response to blue light | 1.24E-02 |
| 65 | GO:0008152: metabolic process | 1.35E-02 |
| 66 | GO:0010114: response to red light | 1.49E-02 |
| 67 | GO:0009735: response to cytokinin | 2.00E-02 |
| 68 | GO:0009416: response to light stimulus | 2.18E-02 |
| 69 | GO:0055085: transmembrane transport | 2.77E-02 |
| 70 | GO:0006457: protein folding | 2.83E-02 |
| 71 | GO:0042744: hydrogen peroxide catabolic process | 3.04E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 2 | GO:0004852: uroporphyrinogen-III synthase activity | 0.00E+00 |
| 3 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
| 4 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 5 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 6 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 7 | GO:0003867: 4-aminobutyrate transaminase activity | 6.58E-05 |
| 8 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.30E-04 |
| 9 | GO:0016630: protochlorophyllide reductase activity | 1.59E-04 |
| 10 | GO:0047746: chlorophyllase activity | 1.59E-04 |
| 11 | GO:0005528: FK506 binding | 1.81E-04 |
| 12 | GO:0048487: beta-tubulin binding | 3.90E-04 |
| 13 | GO:0052656: L-isoleucine transaminase activity | 3.90E-04 |
| 14 | GO:0052654: L-leucine transaminase activity | 3.90E-04 |
| 15 | GO:0008097: 5S rRNA binding | 3.90E-04 |
| 16 | GO:0052655: L-valine transaminase activity | 3.90E-04 |
| 17 | GO:0043495: protein anchor | 5.20E-04 |
| 18 | GO:0001053: plastid sigma factor activity | 5.20E-04 |
| 19 | GO:0016987: sigma factor activity | 5.20E-04 |
| 20 | GO:1990137: plant seed peroxidase activity | 5.20E-04 |
| 21 | GO:0004084: branched-chain-amino-acid transaminase activity | 5.20E-04 |
| 22 | GO:0003959: NADPH dehydrogenase activity | 6.60E-04 |
| 23 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 6.60E-04 |
| 24 | GO:0016688: L-ascorbate peroxidase activity | 8.06E-04 |
| 25 | GO:0004130: cytochrome-c peroxidase activity | 8.06E-04 |
| 26 | GO:0016157: sucrose synthase activity | 9.59E-04 |
| 27 | GO:0019899: enzyme binding | 1.12E-03 |
| 28 | GO:0008235: metalloexopeptidase activity | 1.12E-03 |
| 29 | GO:0004033: aldo-keto reductase (NADP) activity | 1.29E-03 |
| 30 | GO:0043621: protein self-association | 1.44E-03 |
| 31 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 1.47E-03 |
| 32 | GO:0005381: iron ion transmembrane transporter activity | 1.85E-03 |
| 33 | GO:0008047: enzyme activator activity | 2.05E-03 |
| 34 | GO:0004177: aminopeptidase activity | 2.26E-03 |
| 35 | GO:0044183: protein binding involved in protein folding | 2.26E-03 |
| 36 | GO:0051536: iron-sulfur cluster binding | 3.65E-03 |
| 37 | GO:0004407: histone deacetylase activity | 3.65E-03 |
| 38 | GO:0022891: substrate-specific transmembrane transporter activity | 4.70E-03 |
| 39 | GO:0003743: translation initiation factor activity | 5.06E-03 |
| 40 | GO:0047134: protein-disulfide reductase activity | 5.26E-03 |
| 41 | GO:0050662: coenzyme binding | 6.15E-03 |
| 42 | GO:0004791: thioredoxin-disulfide reductase activity | 6.15E-03 |
| 43 | GO:0008168: methyltransferase activity | 6.45E-03 |
| 44 | GO:0004518: nuclease activity | 7.08E-03 |
| 45 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 7.40E-03 |
| 46 | GO:0008237: metallopeptidase activity | 8.06E-03 |
| 47 | GO:0016168: chlorophyll binding | 9.08E-03 |
| 48 | GO:0004721: phosphoprotein phosphatase activity | 9.79E-03 |
| 49 | GO:0008236: serine-type peptidase activity | 1.02E-02 |
| 50 | GO:0003824: catalytic activity | 1.09E-02 |
| 51 | GO:0004222: metalloendopeptidase activity | 1.13E-02 |
| 52 | GO:0004519: endonuclease activity | 1.34E-02 |
| 53 | GO:0051539: 4 iron, 4 sulfur cluster binding | 1.36E-02 |
| 54 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.84E-02 |
| 55 | GO:0051082: unfolded protein binding | 2.36E-02 |
| 56 | GO:0015035: protein disulfide oxidoreductase activity | 2.41E-02 |
| 57 | GO:0016787: hydrolase activity | 2.53E-02 |
| 58 | GO:0019843: rRNA binding | 2.77E-02 |
| 59 | GO:0046872: metal ion binding | 3.51E-02 |
| 60 | GO:0008194: UDP-glycosyltransferase activity | 3.78E-02 |
| 61 | GO:0005509: calcium ion binding | 4.07E-02 |
| 62 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 4.13E-02 |
| 63 | GO:0042802: identical protein binding | 4.13E-02 |
| 64 | GO:0003723: RNA binding | 4.32E-02 |
| 65 | GO:0004601: peroxidase activity | 4.75E-02 |
| 66 | GO:0016788: hydrolase activity, acting on ester bonds | 4.82E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009575: chromoplast stroma | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 3.26E-38 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 6.42E-17 |
| 4 | GO:0009570: chloroplast stroma | 4.91E-12 |
| 5 | GO:0009941: chloroplast envelope | 1.70E-08 |
| 6 | GO:0009579: thylakoid | 5.42E-08 |
| 7 | GO:0009534: chloroplast thylakoid | 5.64E-08 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 8.95E-07 |
| 9 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 4.72E-05 |
| 10 | GO:0031977: thylakoid lumen | 9.18E-05 |
| 11 | GO:0031969: chloroplast membrane | 1.47E-04 |
| 12 | GO:0042651: thylakoid membrane | 2.02E-04 |
| 13 | GO:0009526: plastid envelope | 5.20E-04 |
| 14 | GO:0055035: plastid thylakoid membrane | 6.60E-04 |
| 15 | GO:0005811: lipid particle | 1.47E-03 |
| 16 | GO:0009654: photosystem II oxygen evolving complex | 3.90E-03 |
| 17 | GO:0009523: photosystem II | 6.45E-03 |
| 18 | GO:0019898: extrinsic component of membrane | 6.45E-03 |
| 19 | GO:0005856: cytoskeleton | 1.62E-02 |
| 20 | GO:0009706: chloroplast inner membrane | 2.36E-02 |
| 21 | GO:0005840: ribosome | 4.62E-02 |