co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G43620

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0012502: induction of programmed cell death	0.00E+00
2	GO:0010378: temperature compensation of the circadian clock	0.00E+00
3	GO:0015015: heparan sulfate proteoglycan biosynthetic process, enzymatic modification	0.00E+00
4	GO:0000381: regulation of alternative mRNA splicing, via spliceosome	2.26E-06
5	GO:0000380: alternative mRNA splicing, via spliceosome	3.83E-06
6	GO:0045087: innate immune response	3.24E-05
7	GO:0000025: maltose catabolic process	4.45E-05
8	GO:0032958: inositol phosphate biosynthetic process	4.45E-05
9	GO:0051170: nuclear import	1.10E-04
10	GO:0050688: regulation of defense response to virus	1.10E-04
11	GO:0010366: negative regulation of ethylene biosynthetic process	1.89E-04
12	GO:0009409: response to cold	2.63E-04
13	GO:0007623: circadian rhythm	2.72E-04
14	GO:0055070: copper ion homeostasis	2.78E-04
15	GO:0006020: inositol metabolic process	2.78E-04
16	GO:1901657: glycosyl compound metabolic process	3.14E-04
17	GO:1901409: positive regulation of phosphorylation of RNA polymerase II C-terminal domain	3.73E-04
18	GO:0010508: positive regulation of autophagy	3.73E-04
19	GO:0006646: phosphatidylethanolamine biosynthetic process	3.73E-04
20	GO:0015743: malate transport	3.73E-04
21	GO:0048578: positive regulation of long-day photoperiodism, flowering	4.75E-04
22	GO:0009616: virus induced gene silencing	4.75E-04
23	GO:0043484: regulation of RNA splicing	4.75E-04
24	GO:0009817: defense response to fungus, incompatible interaction	5.18E-04
25	GO:0010218: response to far red light	5.68E-04
26	GO:0018258: protein O-linked glycosylation via hydroxyproline	5.82E-04
27	GO:0010405: arabinogalactan protein metabolic process	5.82E-04
28	GO:0010043: response to zinc ion	5.96E-04
29	GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity	6.94E-04
30	GO:0045926: negative regulation of growth	6.94E-04
31	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	6.94E-04
32	GO:0042542: response to hydrogen peroxide	7.98E-04
33	GO:0007050: cell cycle arrest	8.11E-04
34	GO:0010050: vegetative phase change	8.11E-04
35	GO:0019827: stem cell population maintenance	9.32E-04
36	GO:0009819: drought recovery	9.32E-04
37	GO:0032508: DNA duplex unwinding	9.32E-04
38	GO:0009585: red, far-red light phototransduction	1.10E-03
39	GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	1.19E-03
40	GO:0010018: far-red light signaling pathway	1.32E-03
41	GO:0010267: production of ta-siRNAs involved in RNA interference	1.32E-03
42	GO:0005982: starch metabolic process	1.32E-03
43	GO:0005983: starch catabolic process	1.77E-03
44	GO:0030048: actin filament-based movement	1.92E-03
45	GO:0010628: positive regulation of gene expression	1.92E-03
46	GO:0006006: glucose metabolic process	1.92E-03
47	GO:0010025: wax biosynthetic process	2.42E-03
48	GO:0042753: positive regulation of circadian rhythm	2.42E-03
49	GO:0080147: root hair cell development	2.60E-03
50	GO:0006406: mRNA export from nucleus	2.60E-03
51	GO:0010228: vegetative to reproductive phase transition of meristem	2.75E-03
52	GO:0016575: histone deacetylation	2.77E-03
53	GO:0061077: chaperone-mediated protein folding	2.96E-03
54	GO:0048511: rhythmic process	2.96E-03
55	GO:0010082: regulation of root meristem growth	3.33E-03
56	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	3.73E-03
57	GO:0000226: microtubule cytoskeleton organization	3.93E-03
58	GO:0010501: RNA secondary structure unwinding	3.93E-03
59	GO:0006970: response to osmotic stress	4.35E-03
60	GO:0042752: regulation of circadian rhythm	4.35E-03
61	GO:0009414: response to water deprivation	4.90E-03
62	GO:0080167: response to karrikin	5.00E-03
63	GO:0009639: response to red or far red light	5.45E-03
64	GO:0006914: autophagy	5.45E-03
65	GO:0051607: defense response to virus	5.91E-03
66	GO:0010029: regulation of seed germination	6.39E-03
67	GO:0006974: cellular response to DNA damage stimulus	6.64E-03
68	GO:0006950: response to stress	6.89E-03
69	GO:0009408: response to heat	7.38E-03
70	GO:0000160: phosphorelay signal transduction system	7.65E-03
71	GO:0006397: mRNA processing	7.69E-03
72	GO:0009631: cold acclimation	8.18E-03
73	GO:0010119: regulation of stomatal movement	8.18E-03
74	GO:0005975: carbohydrate metabolic process	8.58E-03
75	GO:0009637: response to blue light	8.71E-03
76	GO:0006897: endocytosis	9.83E-03
77	GO:0009640: photomorphogenesis	1.04E-02
78	GO:0010114: response to red light	1.04E-02
79	GO:0009926: auxin polar transport	1.04E-02
80	GO:0009644: response to high light intensity	1.10E-02
81	GO:0008643: carbohydrate transport	1.10E-02
82	GO:0009735: response to cytokinin	1.20E-02
83	GO:0009846: pollen germination	1.22E-02
84	GO:0006812: cation transport	1.22E-02
85	GO:0009738: abscisic acid-activated signaling pathway	1.27E-02
86	GO:0009737: response to abscisic acid	1.32E-02
87	GO:0006417: regulation of translation	1.38E-02
88	GO:0045893: positive regulation of transcription, DNA-templated	1.51E-02
89	GO:0055085: transmembrane transport	1.67E-02
90	GO:0051726: regulation of cell cycle	1.72E-02
91	GO:0009058: biosynthetic process	2.01E-02
92	GO:0009845: seed germination	2.05E-02
93	GO:0009651: response to salt stress	2.34E-02
94	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.63E-02
95	GO:0009739: response to gibberellin	2.63E-02
96	GO:0006470: protein dephosphorylation	2.68E-02
97	GO:0010468: regulation of gene expression	2.76E-02
98	GO:0008380: RNA splicing	2.76E-02
99	GO:0009733: response to auxin	2.99E-02
100	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	3.14E-02
101	GO:0007049: cell cycle	3.59E-02
102	GO:0010200: response to chitin	3.96E-02
103	GO:0045892: negative regulation of transcription, DNA-templated	4.45E-02
104	GO:0032259: methylation	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0008476: protein-tyrosine sulfotransferase activity	0.00E+00
2	GO:0004306: ethanolamine-phosphate cytidylyltransferase activity	0.00E+00
3	GO:0090711: FMN hydrolase activity	0.00E+00
4	GO:0004567: beta-mannosidase activity	0.00E+00
5	GO:0017095: heparan sulfate 6-O-sulfotransferase activity	0.00E+00
6	GO:0080082: esculin beta-glucosidase activity	0.00E+00
7	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
8	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
9	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
10	GO:0000829: inositol heptakisphosphate kinase activity	4.45E-05
11	GO:0080079: cellobiose glucosidase activity	4.45E-05
12	GO:0000828: inositol hexakisphosphate kinase activity	4.45E-05
13	GO:0004134: 4-alpha-glucanotransferase activity	4.45E-05
14	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	4.45E-05
15	GO:0005253: anion channel activity	3.73E-04
16	GO:0102483: scopolin beta-glucosidase activity	4.68E-04
17	GO:1990714: hydroxyproline O-galactosyltransferase activity	5.82E-04
18	GO:0015562: efflux transmembrane transporter activity	5.82E-04
19	GO:2001070: starch binding	5.82E-04
20	GO:0008422: beta-glucosidase activity	7.07E-04
21	GO:0015140: malate transmembrane transporter activity	8.11E-04
22	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	1.06E-03
23	GO:0009672: auxin:proton symporter activity	1.32E-03
24	GO:0004565: beta-galactosidase activity	1.92E-03
25	GO:0003774: motor activity	2.09E-03
26	GO:0004407: histone deacetylase activity	2.60E-03
27	GO:0008324: cation transmembrane transporter activity	2.77E-03
28	GO:0051087: chaperone binding	2.77E-03
29	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	4.14E-03
30	GO:0008536: Ran GTPase binding	4.14E-03
31	GO:0000156: phosphorelay response regulator activity	5.22E-03
32	GO:0003723: RNA binding	5.80E-03
33	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	7.91E-03
34	GO:0003729: mRNA binding	8.37E-03
35	GO:0003697: single-stranded DNA binding	8.71E-03
36	GO:0043621: protein self-association	1.10E-02
37	GO:0003690: double-stranded DNA binding	1.32E-02
38	GO:0003779: actin binding	1.61E-02
39	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.73E-02
40	GO:0016758: transferase activity, transferring hexosyl groups	1.90E-02
41	GO:0005516: calmodulin binding	1.98E-02
42	GO:0005515: protein binding	2.41E-02
43	GO:0008168: methyltransferase activity	3.23E-02
44	GO:0003682: chromatin binding	3.45E-02
45	GO:0061630: ubiquitin protein ligase activity	4.01E-02
46	GO:0004722: protein serine/threonine phosphatase activity	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0035145: exon-exon junction complex	1.10E-04
2	GO:0043036: starch grain	1.10E-04
3	GO:0005655: nucleolar ribonuclease P complex	6.94E-04
4	GO:0009501: amyloplast	9.32E-04
5	GO:0000307: cyclin-dependent protein kinase holoenzyme complex	1.06E-03
6	GO:0016604: nuclear body	1.32E-03
7	GO:0016459: myosin complex	1.47E-03
8	GO:0048471: perinuclear region of cytoplasm	1.61E-03
9	GO:0031307: integral component of mitochondrial outer membrane	1.77E-03
10	GO:0005654: nucleoplasm	1.87E-03
11	GO:0005777: peroxisome	2.47E-03
12	GO:0005768: endosome	4.42E-03
13	GO:0009506: plasmodesma	4.45E-03
14	GO:0009504: cell plate	4.56E-03
15	GO:0005783: endoplasmic reticulum	4.78E-03
16	GO:0000932: P-body	6.15E-03
17	GO:0000139: Golgi membrane	7.42E-03
18	GO:0005623: cell	1.97E-02
19	GO:0009524: phragmoplast	2.01E-02
20	GO:0005802: trans-Golgi network	2.11E-02
21	GO:0009705: plant-type vacuole membrane	2.43E-02
22	GO:0048046: apoplast	2.59E-02
23	GO:0005618: cell wall	2.88E-02
24	GO:0009505: plant-type cell wall	3.34E-02
25	GO:0005789: endoplasmic reticulum membrane	4.06E-02
26	GO:0005730: nucleolus	4.49E-02